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Supplementary data
Tumor microenvironment associated modifications of alternative splicing
Splicing factor knockdown
Validation
LSM6 NPM1
QPCR Primer Pair Efficiency
: PSMC4_G_1_f PSMC4_G_1_r
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Assay Ct range in blue highlight |
QPCR Primer Pair Efficiency
: Systematic Outlier Filtering
0 technical replicates removed (absolute Ct threshold 0.5; MADZ 3.5)
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QPCR Amplification Data
: CDC40__G_1_s;SKOV3ip1 CM024198 A10;A11;A12
QPCR Amplification Data
: CDC40__G_s;SKOV3ip1 CM024198 A07;A08;A09
QPCR Amplification Data
: HNRNPF__G_s;NIH:OVCAR-3-OK CM024198 D01;D02;D03
QPCR Amplification Data
: HNRPA1__G_1_s;SKOV3ip1 CM024198 C04;C05;C06
QPCR Amplification Data
: HNRPA1__G_s;SKOV3ip1 CM024198 C01;C02;C03
QPCR Amplification Data
: LSM6__G_1_s;SKOV3ip1 CM024198 C10;C11;C12
QPCR Amplification Data
: LSM6__G_s;SKOV3ip1 CM024198 C07;C08;C09
QPCR Amplification Data
: NIH:OVCAR-3-OK;Lipofectamine 2000 CM024198 G07;G08;G09;H07;H08;H09
QPCR Amplification Data
: NPM1__G_1_s;SKOV3ip1 CM024198 D10;D11;D12
QPCR Amplification Data
: NPM1__G_s;SKOV3ip1 CM024198 D07;D08;D09
QPCR Amplification Data
: POLR2C__G_1_s;SKOV3ip1 CM024198 E10;E11;E12
QPCR Amplification Data
: POLR2C__G_s;SKOV3ip1 CM024198 E07;E08;E09
QPCR Amplification Data
: PRMT5__G_1_s;SKOV3ip1 CM024198 F10;F11;F12
QPCR Amplification Data
: PRMT5__G_s;SKOV3ip1 CM024198 F07;F08;F09
QPCR Amplification Data
: SFRS2IP__G_1_s;NIH:OVCAR-3-OK CM024198 E04;E05;E06
QPCR Amplification Data
: SFRS2IP__G_s;NIH:OVCAR-3-OK CM024198 E01;E02;E03
QPCR Amplification Data
: SKOV3ip1;Lipofectamine 2000 CM024198 G01;G02;G03;H01;H02;H03
QPCR Amplification Data
: SKOV3ip1;Lipofectamine 2000 CM024199 G07;G08;G09;H07;H08;H09
QPCR Amplification Data
: SNRPG__G_1_s;SKOV3ip1 CM024198 A04;A05;A06
QPCR Amplification Data
: SNRPG__G_s;SKOV3ip1 CM024198 A01;A02;A03
QPCR Amplification Data
: SNRPN__G_1_s;NIH:OVCAR-3-OK CM024198 F04;F05;F06
QPCR Amplification Data
: SNRPN__G_s;NIH:OVCAR-3-OK CM024198 F01;F02;F03
QPCR Amplification Data
: XRCC6__G_1_s;SKOV3ip1 CM024198 B04;B05;B06
QPCR Amplification Data
: XRCC6__G_s;SKOV3ip1 CM024198 B01;B02;B03
QPCR Amplification Data
: YTHDC1__G_1_s;SKOV3ip1 CM024198 B10;B11;B12
QPCR Amplification Data
: YTHDC1__G_s;SKOV3ip1 CM024198 B07;B08;B09
QPCR Amplification Data
: allstar2_s;NIH:OVCAR-3-OK CM024198 G10;G11;G12;H10;H11;H12
QPCR Amplification Data
: allstar2_s;SKOV3ip1 CM024198 G04;G05;G06;H04;H05;H06
QPCR Amplification Data
: allstar2_s;SKOV3ip1 CM024199 G10;G11;G12;H10;H11;H12
QPCR Amplification Data
: hnRNP F.1;NIH:OVCAR-3-OK CM024198 D04;D05;D06
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