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Supplementary data
Tumor microenvironment associated modifications of alternative splicing
RBFOX2 and QKI dependent ASEs
QKI responsiveness of 382 ACE
Transcript map
: AKR1A1 Brosseau_SKOV_LF
Exon
Length: 330
Transcript: NM_006066
Length: 330
Transcript: NM_006066
Exon
Length: 128
Transcript: NM_006066
Length: 128
Transcript: NM_006066
Exon
Length: 90
Transcript: NM_006066
Length: 90
Transcript: NM_006066
Exon
Length: 120
Transcript: NM_006066
Length: 120
Transcript: NM_006066
Exon
Length: 152
Transcript: NM_006066
Length: 152
Transcript: NM_006066
Exon
Length: 196
Transcript: NM_006066
Length: 196
Transcript: NM_006066
Exon
Length: 200
Transcript: NM_006066
Length: 200
Transcript: NM_006066
Exon
Length: 73
Transcript: NM_006066
Length: 73
Transcript: NM_006066
Exon
Length: 87
Transcript: NM_006066
Length: 87
Transcript: NM_006066
Exon
Length: 159
Transcript: NM_006066
Length: 159
Transcript: NM_006066
Intron
Length: 1280
Transcript: NM_006066
Length: 1280
Transcript: NM_006066
Intron
Length: 9225
Transcript: NM_006066
Length: 9225
Transcript: NM_006066
Intron
Length: 4690
Transcript: NM_006066
Length: 4690
Transcript: NM_006066
Intron
Length: 180
Transcript: NM_006066
Length: 180
Transcript: NM_006066
Intron
Length: 961
Transcript: NM_006066
Length: 961
Transcript: NM_006066
Intron
Length: 307
Transcript: NM_006066
Length: 307
Transcript: NM_006066
Intron
Length: 242
Transcript: NM_006066
Length: 242
Transcript: NM_006066
Intron
Length: 143
Transcript: NM_006066
Length: 143
Transcript: NM_006066
Intron
Length: 661
Transcript: NM_006066
Length: 661
Transcript: NM_006066
Reaction
Expected peak: 294
3.2M
refseq_AKR1A1.F2
refseq_AKR1A1.R2
Expected peak: 294
3.2M
refseq_AKR1A1.F2
refseq_AKR1A1.R2
Exon
Length: 330
Transcript: NM_153326
Length: 330
Transcript: NM_153326
Exon
Length: 90
Transcript: NM_153326
Length: 90
Transcript: NM_153326
Exon
Length: 120
Transcript: NM_153326
Length: 120
Transcript: NM_153326
Exon
Length: 152
Transcript: NM_153326
Length: 152
Transcript: NM_153326
Exon
Length: 196
Transcript: NM_153326
Length: 196
Transcript: NM_153326
Exon
Length: 200
Transcript: NM_153326
Length: 200
Transcript: NM_153326
Exon
Length: 73
Transcript: NM_153326
Length: 73
Transcript: NM_153326
Exon
Length: 87
Transcript: NM_153326
Length: 87
Transcript: NM_153326
Exon
Length: 159
Transcript: NM_153326
Length: 159
Transcript: NM_153326
Intron
Length: 10633
Transcript: NM_153326
Length: 10633
Transcript: NM_153326
Intron
Length: 4690
Transcript: NM_153326
Length: 4690
Transcript: NM_153326
Intron
Length: 180
Transcript: NM_153326
Length: 180
Transcript: NM_153326
Intron
Length: 961
Transcript: NM_153326
Length: 961
Transcript: NM_153326
Intron
Length: 307
Transcript: NM_153326
Length: 307
Transcript: NM_153326
Intron
Length: 242
Transcript: NM_153326
Length: 242
Transcript: NM_153326
Intron
Length: 143
Transcript: NM_153326
Length: 143
Transcript: NM_153326
Intron
Length: 661
Transcript: NM_153326
Length: 661
Transcript: NM_153326
Reaction
Expected peak: 166
22.1M
refseq_AKR1A1.F2
refseq_AKR1A1.R2
Expected peak: 166
22.1M
refseq_AKR1A1.F2
refseq_AKR1A1.R2
refseq_AKR1A1.R2
TACCCAGACCAATCAGAGGC
TACCCAGACCAATCAGAGGC
refseq_AKR1A1.F2
TCACCGCCAGACTTAAGCTG
TCACCGCCAGACTTAAGCTG