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Supplementary data
Tumor microenvironment associated modifications of alternative splicing
RBFOX2 and QKI dependent ASEs
QKI responsiveness of 382 ACE
Transcript map
: ABCD4 Brosseau_SKOV_LF
Exon
Length: 90
Transcript: NM_005050
Length: 90
Transcript: NM_005050
Exon
Length: 119
Transcript: NM_005050
Length: 119
Transcript: NM_005050
Exon
Length: 128
Transcript: NM_005050
Length: 128
Transcript: NM_005050
Exon
Length: 140
Transcript: NM_005050
Length: 140
Transcript: NM_005050
Exon
Length: 117
Transcript: NM_005050
Length: 117
Transcript: NM_005050
Exon
Length: 126
Transcript: NM_005050
Length: 126
Transcript: NM_005050
Exon
Length: 51
Transcript: NM_005050
Length: 51
Transcript: NM_005050
Exon
Length: 95
Transcript: NM_005050
Length: 95
Transcript: NM_005050
Exon
Length: 122
Transcript: NM_005050
Length: 122
Transcript: NM_005050
Exon
Length: 92
Transcript: NM_005050
Length: 92
Transcript: NM_005050
Exon
Length: 90
Transcript: NM_005050
Length: 90
Transcript: NM_005050
Exon
Length: 209
Transcript: NM_005050
Length: 209
Transcript: NM_005050
Exon
Length: 92
Transcript: NM_005050
Length: 92
Transcript: NM_005050
Exon
Length: 37
Transcript: NM_005050
Length: 37
Transcript: NM_005050
Exon
Length: 50
Transcript: NM_005050
Length: 50
Transcript: NM_005050
Exon
Length: 53
Transcript: NM_005050
Length: 53
Transcript: NM_005050
Exon
Length: 77
Transcript: NM_005050
Length: 77
Transcript: NM_005050
Exon
Length: 116
Transcript: NM_005050
Length: 116
Transcript: NM_005050
Exon
Length: 1105
Transcript: NM_005050
Length: 1105
Transcript: NM_005050
Intron
Length: 2606
Transcript: NM_005050
Length: 2606
Transcript: NM_005050
Intron
Length: 474
Transcript: NM_005050
Length: 474
Transcript: NM_005050
Intron
Length: 1478
Transcript: NM_005050
Length: 1478
Transcript: NM_005050
Intron
Length: 1480
Transcript: NM_005050
Length: 1480
Transcript: NM_005050
Intron
Length: 353
Transcript: NM_005050
Length: 353
Transcript: NM_005050
Intron
Length: 655
Transcript: NM_005050
Length: 655
Transcript: NM_005050
Intron
Length: 1899
Transcript: NM_005050
Length: 1899
Transcript: NM_005050
Intron
Length: 284
Transcript: NM_005050
Length: 284
Transcript: NM_005050
Intron
Length: 105
Transcript: NM_005050
Length: 105
Transcript: NM_005050
Intron
Length: 174
Transcript: NM_005050
Length: 174
Transcript: NM_005050
Intron
Length: 1787
Transcript: NM_005050
Length: 1787
Transcript: NM_005050
Intron
Length: 172
Transcript: NM_005050
Length: 172
Transcript: NM_005050
Intron
Length: 507
Transcript: NM_005050
Length: 507
Transcript: NM_005050
Intron
Length: 717
Transcript: NM_005050
Length: 717
Transcript: NM_005050
Intron
Length: 456
Transcript: NM_005050
Length: 456
Transcript: NM_005050
Intron
Length: 320
Transcript: NM_005050
Length: 320
Transcript: NM_005050
Intron
Length: 993
Transcript: NM_005050
Length: 993
Transcript: NM_005050
Intron
Length: 171
Transcript: NM_005050
Length: 171
Transcript: NM_005050
Reaction
Expected peak: 283
8M
refseq_ABCD4.F1
refseq_ABCD4.R1
Expected peak: 283
8M
refseq_ABCD4.F1
refseq_ABCD4.R1
Exon
Length: 90
Transcript: NM_020323
Length: 90
Transcript: NM_020323
Exon
Length: 119
Transcript: NM_020323
Length: 119
Transcript: NM_020323
Exon
Length: 140
Transcript: NM_020323
Length: 140
Transcript: NM_020323
Exon
Length: 117
Transcript: NM_020323
Length: 117
Transcript: NM_020323
Exon
Length: 126
Transcript: NM_020323
Length: 126
Transcript: NM_020323
Exon
Length: 51
Transcript: NM_020323
Length: 51
Transcript: NM_020323
Exon
Length: 95
Transcript: NM_020323
Length: 95
Transcript: NM_020323
Exon
Length: 122
Transcript: NM_020323
Length: 122
Transcript: NM_020323
Exon
Length: 92
Transcript: NM_020323
Length: 92
Transcript: NM_020323
Exon
Length: 90
Transcript: NM_020323
Length: 90
Transcript: NM_020323
Exon
Length: 209
Transcript: NM_020323
Length: 209
Transcript: NM_020323
Exon
Length: 92
Transcript: NM_020323
Length: 92
Transcript: NM_020323
Exon
Length: 37
Transcript: NM_020323
Length: 37
Transcript: NM_020323
Exon
Length: 50
Transcript: NM_020323
Length: 50
Transcript: NM_020323
Exon
Length: 53
Transcript: NM_020323
Length: 53
Transcript: NM_020323
Exon
Length: 77
Transcript: NM_020323
Length: 77
Transcript: NM_020323
Exon
Length: 116
Transcript: NM_020323
Length: 116
Transcript: NM_020323
Exon
Length: 1105
Transcript: NM_020323
Length: 1105
Transcript: NM_020323
Intron
Length: 2606
Transcript: NM_020323
Length: 2606
Transcript: NM_020323
Intron
Length: 2080
Transcript: NM_020323
Length: 2080
Transcript: NM_020323
Intron
Length: 1480
Transcript: NM_020323
Length: 1480
Transcript: NM_020323
Intron
Length: 353
Transcript: NM_020323
Length: 353
Transcript: NM_020323
Intron
Length: 655
Transcript: NM_020323
Length: 655
Transcript: NM_020323
Intron
Length: 1899
Transcript: NM_020323
Length: 1899
Transcript: NM_020323
Intron
Length: 284
Transcript: NM_020323
Length: 284
Transcript: NM_020323
Intron
Length: 105
Transcript: NM_020323
Length: 105
Transcript: NM_020323
Intron
Length: 174
Transcript: NM_020323
Length: 174
Transcript: NM_020323
Intron
Length: 1787
Transcript: NM_020323
Length: 1787
Transcript: NM_020323
Intron
Length: 172
Transcript: NM_020323
Length: 172
Transcript: NM_020323
Intron
Length: 507
Transcript: NM_020323
Length: 507
Transcript: NM_020323
Intron
Length: 717
Transcript: NM_020323
Length: 717
Transcript: NM_020323
Intron
Length: 456
Transcript: NM_020323
Length: 456
Transcript: NM_020323
Intron
Length: 320
Transcript: NM_020323
Length: 320
Transcript: NM_020323
Intron
Length: 993
Transcript: NM_020323
Length: 993
Transcript: NM_020323
Intron
Length: 171
Transcript: NM_020323
Length: 171
Transcript: NM_020323
Reaction
Expected peak: 155
17.6M
refseq_ABCD4.F1
refseq_ABCD4.R1
Expected peak: 155
17.6M
refseq_ABCD4.F1
refseq_ABCD4.R1
Exon
Length: 90
Transcript: NM_020324
Length: 90
Transcript: NM_020324
Exon
Length: 119
Transcript: NM_020324
Length: 119
Transcript: NM_020324
Exon
Length: 128
Transcript: NM_020324
Length: 128
Transcript: NM_020324
Exon
Length: 117
Transcript: NM_020324
Length: 117
Transcript: NM_020324
Exon
Length: 126
Transcript: NM_020324
Length: 126
Transcript: NM_020324
Exon
Length: 51
Transcript: NM_020324
Length: 51
Transcript: NM_020324
Exon
Length: 95
Transcript: NM_020324
Length: 95
Transcript: NM_020324
Exon
Length: 122
Transcript: NM_020324
Length: 122
Transcript: NM_020324
Exon
Length: 92
Transcript: NM_020324
Length: 92
Transcript: NM_020324
Exon
Length: 90
Transcript: NM_020324
Length: 90
Transcript: NM_020324
Exon
Length: 209
Transcript: NM_020324
Length: 209
Transcript: NM_020324
Exon
Length: 92
Transcript: NM_020324
Length: 92
Transcript: NM_020324
Exon
Length: 37
Transcript: NM_020324
Length: 37
Transcript: NM_020324
Exon
Length: 50
Transcript: NM_020324
Length: 50
Transcript: NM_020324
Exon
Length: 53
Transcript: NM_020324
Length: 53
Transcript: NM_020324
Exon
Length: 77
Transcript: NM_020324
Length: 77
Transcript: NM_020324
Exon
Length: 116
Transcript: NM_020324
Length: 116
Transcript: NM_020324
Exon
Length: 1105
Transcript: NM_020324
Length: 1105
Transcript: NM_020324
Intron
Length: 2606
Transcript: NM_020324
Length: 2606
Transcript: NM_020324
Intron
Length: 474
Transcript: NM_020324
Length: 474
Transcript: NM_020324
Intron
Length: 3098
Transcript: NM_020324
Length: 3098
Transcript: NM_020324
Intron
Length: 353
Transcript: NM_020324
Length: 353
Transcript: NM_020324
Intron
Length: 655
Transcript: NM_020324
Length: 655
Transcript: NM_020324
Intron
Length: 1899
Transcript: NM_020324
Length: 1899
Transcript: NM_020324
Intron
Length: 284
Transcript: NM_020324
Length: 284
Transcript: NM_020324
Intron
Length: 105
Transcript: NM_020324
Length: 105
Transcript: NM_020324
Intron
Length: 174
Transcript: NM_020324
Length: 174
Transcript: NM_020324
Intron
Length: 1787
Transcript: NM_020324
Length: 1787
Transcript: NM_020324
Intron
Length: 172
Transcript: NM_020324
Length: 172
Transcript: NM_020324
Intron
Length: 507
Transcript: NM_020324
Length: 507
Transcript: NM_020324
Intron
Length: 717
Transcript: NM_020324
Length: 717
Transcript: NM_020324
Intron
Length: 456
Transcript: NM_020324
Length: 456
Transcript: NM_020324
Intron
Length: 320
Transcript: NM_020324
Length: 320
Transcript: NM_020324
Intron
Length: 993
Transcript: NM_020324
Length: 993
Transcript: NM_020324
Intron
Length: 171
Transcript: NM_020324
Length: 171
Transcript: NM_020324
Exon
Length: 90
Transcript: NM_020325
Length: 90
Transcript: NM_020325
Exon
Length: 119
Transcript: NM_020325
Length: 119
Transcript: NM_020325
Exon
Length: 128
Transcript: NM_020325
Length: 128
Transcript: NM_020325
Exon
Length: 140
Transcript: NM_020325
Length: 140
Transcript: NM_020325
Exon
Length: 117
Transcript: NM_020325
Length: 117
Transcript: NM_020325
Exon
Length: 126
Transcript: NM_020325
Length: 126
Transcript: NM_020325
Exon
Length: 51
Transcript: NM_020325
Length: 51
Transcript: NM_020325
Exon
Length: 95
Transcript: NM_020325
Length: 95
Transcript: NM_020325
Exon
Length: 122
Transcript: NM_020325
Length: 122
Transcript: NM_020325
Exon
Length: 92
Transcript: NM_020325
Length: 92
Transcript: NM_020325
Exon
Length: 90
Transcript: NM_020325
Length: 90
Transcript: NM_020325
Exon
Length: 209
Transcript: NM_020325
Length: 209
Transcript: NM_020325
Exon
Length: 92
Transcript: NM_020325
Length: 92
Transcript: NM_020325
Exon
Length: 37
Transcript: NM_020325
Length: 37
Transcript: NM_020325
Exon
Length: 50
Transcript: NM_020325
Length: 50
Transcript: NM_020325
Exon
Length: 53
Transcript: NM_020325
Length: 53
Transcript: NM_020325
Exon
Length: 77
Transcript: NM_020325
Length: 77
Transcript: NM_020325
Exon
Length: 1392
Transcript: NM_020325
Length: 1392
Transcript: NM_020325
Intron
Length: 2606
Transcript: NM_020325
Length: 2606
Transcript: NM_020325
Intron
Length: 474
Transcript: NM_020325
Length: 474
Transcript: NM_020325
Intron
Length: 1478
Transcript: NM_020325
Length: 1478
Transcript: NM_020325
Intron
Length: 1480
Transcript: NM_020325
Length: 1480
Transcript: NM_020325
Intron
Length: 353
Transcript: NM_020325
Length: 353
Transcript: NM_020325
Intron
Length: 655
Transcript: NM_020325
Length: 655
Transcript: NM_020325
Intron
Length: 1899
Transcript: NM_020325
Length: 1899
Transcript: NM_020325
Intron
Length: 284
Transcript: NM_020325
Length: 284
Transcript: NM_020325
Intron
Length: 105
Transcript: NM_020325
Length: 105
Transcript: NM_020325
Intron
Length: 174
Transcript: NM_020325
Length: 174
Transcript: NM_020325
Intron
Length: 1787
Transcript: NM_020325
Length: 1787
Transcript: NM_020325
Intron
Length: 172
Transcript: NM_020325
Length: 172
Transcript: NM_020325
Intron
Length: 507
Transcript: NM_020325
Length: 507
Transcript: NM_020325
Intron
Length: 717
Transcript: NM_020325
Length: 717
Transcript: NM_020325
Intron
Length: 456
Transcript: NM_020325
Length: 456
Transcript: NM_020325
Intron
Length: 320
Transcript: NM_020325
Length: 320
Transcript: NM_020325
Intron
Length: 993
Transcript: NM_020325
Length: 993
Transcript: NM_020325
Reaction
Expected peak: 283
8M
refseq_ABCD4.F1
refseq_ABCD4.R1
Expected peak: 283
8M
refseq_ABCD4.F1
refseq_ABCD4.R1
Exon
Length: 90
Transcript: NM_020326
Length: 90
Transcript: NM_020326
Exon
Length: 119
Transcript: NM_020326
Length: 119
Transcript: NM_020326
Exon
Length: 128
Transcript: NM_020326
Length: 128
Transcript: NM_020326
Exon
Length: 140
Transcript: NM_020326
Length: 140
Transcript: NM_020326
Exon
Length: 117
Transcript: NM_020326
Length: 117
Transcript: NM_020326
Exon
Length: 126
Transcript: NM_020326
Length: 126
Transcript: NM_020326
Exon
Length: 51
Transcript: NM_020326
Length: 51
Transcript: NM_020326
Exon
Length: 95
Transcript: NM_020326
Length: 95
Transcript: NM_020326
Exon
Length: 122
Transcript: NM_020326
Length: 122
Transcript: NM_020326
Exon
Length: 92
Transcript: NM_020326
Length: 92
Transcript: NM_020326
Exon
Length: 90
Transcript: NM_020326
Length: 90
Transcript: NM_020326
Exon
Length: 209
Transcript: NM_020326
Length: 209
Transcript: NM_020326
Exon
Length: 636
Transcript: NM_020326
Length: 636
Transcript: NM_020326
Exon
Length: 50
Transcript: NM_020326
Length: 50
Transcript: NM_020326
Exon
Length: 53
Transcript: NM_020326
Length: 53
Transcript: NM_020326
Exon
Length: 77
Transcript: NM_020326
Length: 77
Transcript: NM_020326
Exon
Length: 116
Transcript: NM_020326
Length: 116
Transcript: NM_020326
Exon
Length: 1105
Transcript: NM_020326
Length: 1105
Transcript: NM_020326
Intron
Length: 2606
Transcript: NM_020326
Length: 2606
Transcript: NM_020326
Intron
Length: 474
Transcript: NM_020326
Length: 474
Transcript: NM_020326
Intron
Length: 1478
Transcript: NM_020326
Length: 1478
Transcript: NM_020326
Intron
Length: 1480
Transcript: NM_020326
Length: 1480
Transcript: NM_020326
Intron
Length: 353
Transcript: NM_020326
Length: 353
Transcript: NM_020326
Intron
Length: 655
Transcript: NM_020326
Length: 655
Transcript: NM_020326
Intron
Length: 1899
Transcript: NM_020326
Length: 1899
Transcript: NM_020326
Intron
Length: 284
Transcript: NM_020326
Length: 284
Transcript: NM_020326
Intron
Length: 105
Transcript: NM_020326
Length: 105
Transcript: NM_020326
Intron
Length: 174
Transcript: NM_020326
Length: 174
Transcript: NM_020326
Intron
Length: 1787
Transcript: NM_020326
Length: 1787
Transcript: NM_020326
Intron
Length: 172
Transcript: NM_020326
Length: 172
Transcript: NM_020326
Intron
Length: 717
Transcript: NM_020326
Length: 717
Transcript: NM_020326
Intron
Length: 456
Transcript: NM_020326
Length: 456
Transcript: NM_020326
Intron
Length: 320
Transcript: NM_020326
Length: 320
Transcript: NM_020326
Intron
Length: 993
Transcript: NM_020326
Length: 993
Transcript: NM_020326
Intron
Length: 171
Transcript: NM_020326
Length: 171
Transcript: NM_020326
Reaction
Expected peak: 283
8M
refseq_ABCD4.F1
refseq_ABCD4.R1
Expected peak: 283
8M
refseq_ABCD4.F1
refseq_ABCD4.R1
refseq_ABCD4.F1
ATGCCTTGATGTTCCTGACC
ATGCCTTGATGTTCCTGACC
refseq_ABCD4.R1
TTGAGGGTGTAGTACGCACG
TTGAGGGTGTAGTACGCACG