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Supplementary data
Tumor microenvironment associated modifications of alternative splicing
RBFOX2 and QKI dependent ASEs
QKI responsiveness of 382 ACE
Transcript map
: ANAPC11 Brosseau_SKOV_LF
Exon
Length: 141
Transcript: NM_001002244
Length: 141
Transcript: NM_001002244
Exon
Length: 120
Transcript: NM_001002244
Length: 120
Transcript: NM_001002244
Exon
Length: 301
Transcript: NM_001002244
Length: 301
Transcript: NM_001002244
Exon
Length: 568
Transcript: NM_001002244
Length: 568
Transcript: NM_001002244
Intron
Length: 2603
Transcript: NM_001002244
Length: 2603
Transcript: NM_001002244
Intron
Length: 4651
Transcript: NM_001002244
Length: 4651
Transcript: NM_001002244
Intron
Length: 377
Transcript: NM_001002244
Length: 377
Transcript: NM_001002244
Reaction
Expected peak: 141
30.7M
refseq_ANAPC11.F2
refseq_ANAPC11.R3
Expected peak: 141
30.7M
refseq_ANAPC11.F2
refseq_ANAPC11.R3
Exon
Length: 111
Transcript: NM_001002245
Length: 111
Transcript: NM_001002245
Exon
Length: 120
Transcript: NM_001002245
Length: 120
Transcript: NM_001002245
Exon
Length: 568
Transcript: NM_001002245
Length: 568
Transcript: NM_001002245
Intron
Length: 2633
Transcript: NM_001002245
Length: 2633
Transcript: NM_001002245
Intron
Length: 5329
Transcript: NM_001002245
Length: 5329
Transcript: NM_001002245
Exon
Length: 111
Transcript: NM_001002246
Length: 111
Transcript: NM_001002246
Exon
Length: 63
Transcript: NM_001002246
Length: 63
Transcript: NM_001002246
Exon
Length: 120
Transcript: NM_001002246
Length: 120
Transcript: NM_001002246
Exon
Length: 568
Transcript: NM_001002246
Length: 568
Transcript: NM_001002246
Intron
Length: 1718
Transcript: NM_001002246
Length: 1718
Transcript: NM_001002246
Intron
Length: 852
Transcript: NM_001002246
Length: 852
Transcript: NM_001002246
Intron
Length: 5329
Transcript: NM_001002246
Length: 5329
Transcript: NM_001002246
Exon
Length: 119
Transcript: NM_001002247
Length: 119
Transcript: NM_001002247
Exon
Length: 120
Transcript: NM_001002247
Length: 120
Transcript: NM_001002247
Exon
Length: 568
Transcript: NM_001002247
Length: 568
Transcript: NM_001002247
Intron
Length: 2625
Transcript: NM_001002247
Length: 2625
Transcript: NM_001002247
Intron
Length: 5329
Transcript: NM_001002247
Length: 5329
Transcript: NM_001002247
Exon
Length: 119
Transcript: NM_001002248
Length: 119
Transcript: NM_001002248
Exon
Length: 63
Transcript: NM_001002248
Length: 63
Transcript: NM_001002248
Exon
Length: 120
Transcript: NM_001002248
Length: 120
Transcript: NM_001002248
Exon
Length: 568
Transcript: NM_001002248
Length: 568
Transcript: NM_001002248
Intron
Length: 1710
Transcript: NM_001002248
Length: 1710
Transcript: NM_001002248
Intron
Length: 852
Transcript: NM_001002248
Length: 852
Transcript: NM_001002248
Intron
Length: 5329
Transcript: NM_001002248
Length: 5329
Transcript: NM_001002248
Exon
Length: 165
Transcript: NM_001002249
Length: 165
Transcript: NM_001002249
Exon
Length: 63
Transcript: NM_001002249
Length: 63
Transcript: NM_001002249
Exon
Length: 120
Transcript: NM_001002249
Length: 120
Transcript: NM_001002249
Exon
Length: 568
Transcript: NM_001002249
Length: 568
Transcript: NM_001002249
Intron
Length: 1445
Transcript: NM_001002249
Length: 1445
Transcript: NM_001002249
Intron
Length: 852
Transcript: NM_001002249
Length: 852
Transcript: NM_001002249
Intron
Length: 5329
Transcript: NM_001002249
Length: 5329
Transcript: NM_001002249
Exon
Length: 141
Transcript: NM_016476
Length: 141
Transcript: NM_016476
Exon
Length: 63
Transcript: NM_016476
Length: 63
Transcript: NM_016476
Exon
Length: 120
Transcript: NM_016476
Length: 120
Transcript: NM_016476
Exon
Length: 568
Transcript: NM_016476
Length: 568
Transcript: NM_016476
Intron
Length: 1688
Transcript: NM_016476
Length: 1688
Transcript: NM_016476
Intron
Length: 852
Transcript: NM_016476
Length: 852
Transcript: NM_016476
Intron
Length: 5329
Transcript: NM_016476
Length: 5329
Transcript: NM_016476
Reaction
Expected peak: 204
16.3M
refseq_ANAPC11.F2
refseq_ANAPC11.R3
Expected peak: 204
16.3M
refseq_ANAPC11.F2
refseq_ANAPC11.R3
refseq_ANAPC11.R3
AGCATCCGTTAAATGCCATC
AGCATCCGTTAAATGCCATC
refseq_ANAPC11.F2
GTAGGGCGGTGCGTGATTAG
GTAGGGCGGTGCGTGATTAG