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Supplementary data
Tumor microenvironment associated modifications of alternative splicing
RBFOX2 and QKI dependent ASEs
RBFOX2 responsiveness of 382 ACE
Transcript map
: ABI1 MDA-MB-231 (2006-07-27 96hrs)
- refseq_ABI1.F3 / refseq_ABI1.R3 (CM018880 D12) : Curve | Curve set
- refseq_ABI1.F3 / refseq_ABI1.R3 (CM018884 C12) : Curve | Curve set
- refseq_ABI1.F3 / refseq_ABI1.R3 (CM018397 C11) : Curve | Curve set
- refseq_ABI1.F3 / refseq_ABI1.R3 (CM018382 C11) : Curve | Curve set
- refseq_ABI1.F3 / refseq_ABI1.R3 (CM018385 C11) : Curve | Curve set
- refseq_ABI1.F3 / refseq_ABI1.R3 (CM018388 C11) : Curve | Curve set
- refseq_ABI1.F3 / refseq_ABI1.R3 (CM018391 C12) : Curve | Curve set
- refseq_ABI1.F3 / refseq_ABI1.R3 (CM018391 C11) : Curve | Curve set
- refseq_ABI1.F3 / refseq_ABI1.R3 (CM018392 C11) : Curve | Curve set
- refseq_ABI1.F3 / refseq_ABI1.R3 (CM018394 C11) : Curve | Curve set
Exon
Length: 284
Transcript: NM_001012750
Length: 284
Transcript: NM_001012750
Exon
Length: 168
Transcript: NM_001012750
Length: 168
Transcript: NM_001012750
Exon
Length: 177
Transcript: NM_001012750
Length: 177
Transcript: NM_001012750
Exon
Length: 15
Transcript: NM_001012750
Length: 15
Transcript: NM_001012750
Exon
Length: 101
Transcript: NM_001012750
Length: 101
Transcript: NM_001012750
Exon
Length: 141
Transcript: NM_001012750
Length: 141
Transcript: NM_001012750
Exon
Length: 101
Transcript: NM_001012750
Length: 101
Transcript: NM_001012750
Exon
Length: 177
Transcript: NM_001012750
Length: 177
Transcript: NM_001012750
Exon
Length: 87
Transcript: NM_001012750
Length: 87
Transcript: NM_001012750
Exon
Length: 186
Transcript: NM_001012750
Length: 186
Transcript: NM_001012750
Exon
Length: 2150
Transcript: NM_001012750
Length: 2150
Transcript: NM_001012750
Intron
Length: 37441
Transcript: NM_001012750
Length: 37441
Transcript: NM_001012750
Intron
Length: 45896
Transcript: NM_001012750
Length: 45896
Transcript: NM_001012750
Intron
Length: 5975
Transcript: NM_001012750
Length: 5975
Transcript: NM_001012750
Intron
Length: 729
Transcript: NM_001012750
Length: 729
Transcript: NM_001012750
Intron
Length: 1252
Transcript: NM_001012750
Length: 1252
Transcript: NM_001012750
Intron
Length: 3533
Transcript: NM_001012750
Length: 3533
Transcript: NM_001012750
Intron
Length: 5979
Transcript: NM_001012750
Length: 5979
Transcript: NM_001012750
Intron
Length: 3320
Transcript: NM_001012750
Length: 3320
Transcript: NM_001012750
Intron
Length: 3871
Transcript: NM_001012750
Length: 3871
Transcript: NM_001012750
Intron
Length: 2852
Transcript: NM_001012750
Length: 2852
Transcript: NM_001012750
Reaction
Expected peak: 252
40.1M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
40.1M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 252
32.4M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
32.4M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 252
39.2M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
39.2M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 252
35.1M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
35.1M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 252
87.7M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
87.7M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 252
35.3M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
35.3M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 252
9.5M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
9.5M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 252
60.1M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
60.1M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 252
11.4M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
11.4M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 252
93.5M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
93.5M
refseq_ABI1.F3
refseq_ABI1.R3
Exon
Length: 284
Transcript: NM_001012751
Length: 284
Transcript: NM_001012751
Exon
Length: 168
Transcript: NM_001012751
Length: 168
Transcript: NM_001012751
Exon
Length: 177
Transcript: NM_001012751
Length: 177
Transcript: NM_001012751
Exon
Length: 15
Transcript: NM_001012751
Length: 15
Transcript: NM_001012751
Exon
Length: 101
Transcript: NM_001012751
Length: 101
Transcript: NM_001012751
Exon
Length: 141
Transcript: NM_001012751
Length: 141
Transcript: NM_001012751
Exon
Length: 101
Transcript: NM_001012751
Length: 101
Transcript: NM_001012751
Exon
Length: 177
Transcript: NM_001012751
Length: 177
Transcript: NM_001012751
Exon
Length: 186
Transcript: NM_001012751
Length: 186
Transcript: NM_001012751
Exon
Length: 2150
Transcript: NM_001012751
Length: 2150
Transcript: NM_001012751
Intron
Length: 37441
Transcript: NM_001012751
Length: 37441
Transcript: NM_001012751
Intron
Length: 45896
Transcript: NM_001012751
Length: 45896
Transcript: NM_001012751
Intron
Length: 5975
Transcript: NM_001012751
Length: 5975
Transcript: NM_001012751
Intron
Length: 729
Transcript: NM_001012751
Length: 729
Transcript: NM_001012751
Intron
Length: 1252
Transcript: NM_001012751
Length: 1252
Transcript: NM_001012751
Intron
Length: 3533
Transcript: NM_001012751
Length: 3533
Transcript: NM_001012751
Intron
Length: 5979
Transcript: NM_001012751
Length: 5979
Transcript: NM_001012751
Intron
Length: 7278
Transcript: NM_001012751
Length: 7278
Transcript: NM_001012751
Intron
Length: 2852
Transcript: NM_001012751
Length: 2852
Transcript: NM_001012751
Reaction
Expected peak: 165
53.1M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 165
53.1M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 165
44.7M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 165
44.7M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 165
54.2M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 165
54.2M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 165
36.6M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 165
36.6M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 165
126.7M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 165
126.7M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 165
39M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 165
39M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 165
159.2M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 165
159.2M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 165
87.8M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 165
87.8M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 165
137M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 165
137M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 165
136.39999M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 165
136.39999M
refseq_ABI1.F3
refseq_ABI1.R3
Exon
Length: 284
Transcript: NM_001012752
Length: 284
Transcript: NM_001012752
Exon
Length: 168
Transcript: NM_001012752
Length: 168
Transcript: NM_001012752
Exon
Length: 177
Transcript: NM_001012752
Length: 177
Transcript: NM_001012752
Exon
Length: 101
Transcript: NM_001012752
Length: 101
Transcript: NM_001012752
Exon
Length: 141
Transcript: NM_001012752
Length: 141
Transcript: NM_001012752
Exon
Length: 101
Transcript: NM_001012752
Length: 101
Transcript: NM_001012752
Exon
Length: 177
Transcript: NM_001012752
Length: 177
Transcript: NM_001012752
Exon
Length: 87
Transcript: NM_001012752
Length: 87
Transcript: NM_001012752
Exon
Length: 186
Transcript: NM_001012752
Length: 186
Transcript: NM_001012752
Exon
Length: 2150
Transcript: NM_001012752
Length: 2150
Transcript: NM_001012752
Intron
Length: 37441
Transcript: NM_001012752
Length: 37441
Transcript: NM_001012752
Intron
Length: 45896
Transcript: NM_001012752
Length: 45896
Transcript: NM_001012752
Intron
Length: 6719
Transcript: NM_001012752
Length: 6719
Transcript: NM_001012752
Intron
Length: 1252
Transcript: NM_001012752
Length: 1252
Transcript: NM_001012752
Intron
Length: 3533
Transcript: NM_001012752
Length: 3533
Transcript: NM_001012752
Intron
Length: 5979
Transcript: NM_001012752
Length: 5979
Transcript: NM_001012752
Intron
Length: 3320
Transcript: NM_001012752
Length: 3320
Transcript: NM_001012752
Intron
Length: 3871
Transcript: NM_001012752
Length: 3871
Transcript: NM_001012752
Intron
Length: 2852
Transcript: NM_001012752
Length: 2852
Transcript: NM_001012752
Reaction
Expected peak: 252
40.1M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
40.1M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 252
32.4M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
32.4M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 252
39.2M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
39.2M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 252
35.1M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
35.1M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 252
87.7M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
87.7M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 252
35.3M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
35.3M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 252
9.5M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
9.5M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 252
60.1M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
60.1M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 252
11.4M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
11.4M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 252
93.5M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
93.5M
refseq_ABI1.F3
refseq_ABI1.R3
Exon
Length: 284
Transcript: NM_005470
Length: 284
Transcript: NM_005470
Exon
Length: 168
Transcript: NM_005470
Length: 168
Transcript: NM_005470
Exon
Length: 177
Transcript: NM_005470
Length: 177
Transcript: NM_005470
Exon
Length: 15
Transcript: NM_005470
Length: 15
Transcript: NM_005470
Exon
Length: 101
Transcript: NM_005470
Length: 101
Transcript: NM_005470
Exon
Length: 141
Transcript: NM_005470
Length: 141
Transcript: NM_005470
Exon
Length: 101
Transcript: NM_005470
Length: 101
Transcript: NM_005470
Exon
Length: 81
Transcript: NM_005470
Length: 81
Transcript: NM_005470
Exon
Length: 177
Transcript: NM_005470
Length: 177
Transcript: NM_005470
Exon
Length: 87
Transcript: NM_005470
Length: 87
Transcript: NM_005470
Exon
Length: 186
Transcript: NM_005470
Length: 186
Transcript: NM_005470
Exon
Length: 2150
Transcript: NM_005470
Length: 2150
Transcript: NM_005470
Intron
Length: 37441
Transcript: NM_005470
Length: 37441
Transcript: NM_005470
Intron
Length: 45896
Transcript: NM_005470
Length: 45896
Transcript: NM_005470
Intron
Length: 5975
Transcript: NM_005470
Length: 5975
Transcript: NM_005470
Intron
Length: 729
Transcript: NM_005470
Length: 729
Transcript: NM_005470
Intron
Length: 1252
Transcript: NM_005470
Length: 1252
Transcript: NM_005470
Intron
Length: 3533
Transcript: NM_005470
Length: 3533
Transcript: NM_005470
Intron
Length: 1257
Transcript: NM_005470
Length: 1257
Transcript: NM_005470
Intron
Length: 4641
Transcript: NM_005470
Length: 4641
Transcript: NM_005470
Intron
Length: 3320
Transcript: NM_005470
Length: 3320
Transcript: NM_005470
Intron
Length: 3871
Transcript: NM_005470
Length: 3871
Transcript: NM_005470
Intron
Length: 2852
Transcript: NM_005470
Length: 2852
Transcript: NM_005470
Reaction
Expected peak: 252
40.1M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
40.1M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 252
32.4M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
32.4M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 252
39.2M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
39.2M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 252
35.1M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
35.1M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 252
87.7M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
87.7M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 252
35.3M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
35.3M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 252
9.5M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
9.5M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 252
60.1M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
60.1M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 252
11.4M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
11.4M
refseq_ABI1.F3
refseq_ABI1.R3
Reaction
Expected peak: 252
93.5M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
93.5M
refseq_ABI1.F3
refseq_ABI1.R3
refseq_ABI1.F3
CAATGACCAGGCAGATATCTCG
CAATGACCAGGCAGATATCTCG
refseq_ABI1.R3
GCGGTGGAGTTGGACTATCA
GCGGTGGAGTTGGACTATCA