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Supplementary data
Tumor microenvironment associated modifications of alternative splicing
RBFOX2 and QKI dependent ASEs
RBFOX2 responsiveness of 382 ACE
Transcript map
: AMACR MDA-MB-231 (2006-07-27 96hrs)
- refseq_AMACR.F1 / refseq_AMACR.R1 (CM018880 D20) : Curve | Curve set
- refseq_AMACR.F1 / refseq_AMACR.R1 (CM018884 C20) : Curve | Curve set
- refseq_AMACR.F1 / refseq_AMACR.R1 (CM018397 C19) : Curve | Curve set
- refseq_AMACR.F1 / refseq_AMACR.R1 (CM018382 C19) : Curve | Curve set
- refseq_AMACR.F1 / refseq_AMACR.R1 (CM018385 C19) : Curve | Curve set
- refseq_AMACR.F1 / refseq_AMACR.R1 (CM018388 C19) : Curve | Curve set
- refseq_AMACR.F1 / refseq_AMACR.R1 (CM018391 C20) : Curve | Curve set
- refseq_AMACR.F1 / refseq_AMACR.R1 (CM018391 C19) : Curve | Curve set
- refseq_AMACR.F1 / refseq_AMACR.R1 (CM018392 C19) : Curve | Curve set
- refseq_AMACR.F1 / refseq_AMACR.R1 (CM018394 C19) : Curve | Curve set
Exon
Length: 329
Transcript: NM_014324
Length: 329
Transcript: NM_014324
Exon
Length: 144
Transcript: NM_014324
Length: 144
Transcript: NM_014324
Exon
Length: 161
Transcript: NM_014324
Length: 161
Transcript: NM_014324
Exon
Length: 187
Transcript: NM_014324
Length: 187
Transcript: NM_014324
Exon
Length: 1713
Transcript: NM_014324
Length: 1713
Transcript: NM_014324
Intron
Length: 1873
Transcript: NM_014324
Length: 1873
Transcript: NM_014324
Intron
Length: 1021
Transcript: NM_014324
Length: 1021
Transcript: NM_014324
Intron
Length: 5746
Transcript: NM_014324
Length: 5746
Transcript: NM_014324
Intron
Length: 9138
Transcript: NM_014324
Length: 9138
Transcript: NM_014324
Reaction
Expected peak: 350
33.5M
refseq_AMACR.F1
refseq_AMACR.R1
Expected peak: 350
33.5M
refseq_AMACR.F1
refseq_AMACR.R1
Reaction
Expected peak: 350
26.2M
refseq_AMACR.F1
refseq_AMACR.R1
Expected peak: 350
26.2M
refseq_AMACR.F1
refseq_AMACR.R1
Reaction
Expected peak: 350
93.3M
refseq_AMACR.F1
refseq_AMACR.R1
Expected peak: 350
93.3M
refseq_AMACR.F1
refseq_AMACR.R1
Reaction
Expected peak: 350
29.7M
refseq_AMACR.F1
refseq_AMACR.R1
Expected peak: 350
29.7M
refseq_AMACR.F1
refseq_AMACR.R1
Reaction
Expected peak: 350
65M
refseq_AMACR.F1
refseq_AMACR.R1
Expected peak: 350
65M
refseq_AMACR.F1
refseq_AMACR.R1
Reaction
Expected peak: 350
36.8M
refseq_AMACR.F1
refseq_AMACR.R1
Expected peak: 350
36.8M
refseq_AMACR.F1
refseq_AMACR.R1
Reaction
Expected peak: 350
60.4M
refseq_AMACR.F1
refseq_AMACR.R1
Expected peak: 350
60.4M
refseq_AMACR.F1
refseq_AMACR.R1
Reaction
Expected peak: 350
62.2M
refseq_AMACR.F1
refseq_AMACR.R1
Expected peak: 350
62.2M
refseq_AMACR.F1
refseq_AMACR.R1
Reaction
Expected peak: 350
78.7M
refseq_AMACR.F1
refseq_AMACR.R1
Expected peak: 350
78.7M
refseq_AMACR.F1
refseq_AMACR.R1
Reaction
Expected peak: 350
65M
refseq_AMACR.F1
refseq_AMACR.R1
Expected peak: 350
65M
refseq_AMACR.F1
refseq_AMACR.R1
Exon
Length: 329
Transcript: NM_203382
Length: 329
Transcript: NM_203382
Exon
Length: 144
Transcript: NM_203382
Length: 144
Transcript: NM_203382
Exon
Length: 187
Transcript: NM_203382
Length: 187
Transcript: NM_203382
Exon
Length: 1713
Transcript: NM_203382
Length: 1713
Transcript: NM_203382
Intron
Length: 1873
Transcript: NM_203382
Length: 1873
Transcript: NM_203382
Intron
Length: 6928
Transcript: NM_203382
Length: 6928
Transcript: NM_203382
Intron
Length: 9138
Transcript: NM_203382
Length: 9138
Transcript: NM_203382
Reaction
Expected peak: 189
9M
refseq_AMACR.F1
refseq_AMACR.R1
Expected peak: 189
9M
refseq_AMACR.F1
refseq_AMACR.R1
Reaction
Expected peak: 189
8.7M
refseq_AMACR.F1
refseq_AMACR.R1
Expected peak: 189
8.7M
refseq_AMACR.F1
refseq_AMACR.R1
Reaction
Expected peak: 189
26.2M
refseq_AMACR.F1
refseq_AMACR.R1
Expected peak: 189
26.2M
refseq_AMACR.F1
refseq_AMACR.R1
Reaction
Expected peak: 189
4.5M
refseq_AMACR.F1
refseq_AMACR.R1
Expected peak: 189
4.5M
refseq_AMACR.F1
refseq_AMACR.R1
Reaction
Expected peak: 189
15M
refseq_AMACR.F1
refseq_AMACR.R1
Expected peak: 189
15M
refseq_AMACR.F1
refseq_AMACR.R1
Reaction
Expected peak: 189
5.5M
refseq_AMACR.F1
refseq_AMACR.R1
Expected peak: 189
5.5M
refseq_AMACR.F1
refseq_AMACR.R1
Reaction
Expected peak: 189
19.7M
refseq_AMACR.F1
refseq_AMACR.R1
Expected peak: 189
19.7M
refseq_AMACR.F1
refseq_AMACR.R1
Reaction
Expected peak: 189
15.8M
refseq_AMACR.F1
refseq_AMACR.R1
Expected peak: 189
15.8M
refseq_AMACR.F1
refseq_AMACR.R1
Reaction
Expected peak: 189
17.4M
refseq_AMACR.F1
refseq_AMACR.R1
Expected peak: 189
17.4M
refseq_AMACR.F1
refseq_AMACR.R1
Reaction
Expected peak: 189
12.1M
refseq_AMACR.F1
refseq_AMACR.R1
Expected peak: 189
12.1M
refseq_AMACR.F1
refseq_AMACR.R1
refseq_AMACR.R1
CCACCATCCAACATGTTCTG
CCACCATCCAACATGTTCTG
refseq_AMACR.F1
CCAAGGCTTATTTATGCCAGG
CCAAGGCTTATTTATGCCAGG