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Supplementary data
Tumor microenvironment associated modifications of alternative splicing
RBFOX2 and QKI dependent ASEs
RBFOX2 responsiveness of 382 ACE
Transcript map
: ABL2 MDA-MB-231 (2006-07-27 96hrs)
- rs.ABL2.F1 / rs.ABL2.R1 (CM018881 J18) : Curve | Curve set
- rs.ABL2.F1 / rs.ABL2.R1 (CM018885 I18) : Curve | Curve set
- rs.ABL2.F1 / rs.ABL2.R1 (CM018397 J17) : Curve | Curve set
- rs.ABL2.F1 / rs.ABL2.R1 (CM018382 J17) : Curve | Curve set
- rs.ABL2.F1 / rs.ABL2.R1 (CM018385 J17) : Curve | Curve set
- rs.ABL2.F1 / rs.ABL2.R1 (CM018388 J17) : Curve | Curve set
- rs.ABL2.F1 / rs.ABL2.R1 (CM018391 J18) : Curve | Curve set
- rs.ABL2.F1 / rs.ABL2.R1 (CM018391 J17) : Curve | Curve set
- rs.ABL2.F1 / rs.ABL2.R1 (CM018392 J17) : Curve | Curve set
- rs.ABL2.F1 / rs.ABL2.R1 (CM018394 J17) : Curve | Curve set
Exon
Length: 144
Transcript: NM_001100108
Length: 144
Transcript: NM_001100108
Exon
Length: 63
Transcript: NM_001100108
Length: 63
Transcript: NM_001100108
Exon
Length: 171
Transcript: NM_001100108
Length: 171
Transcript: NM_001100108
Exon
Length: 296
Transcript: NM_001100108
Length: 296
Transcript: NM_001100108
Exon
Length: 273
Transcript: NM_001100108
Length: 273
Transcript: NM_001100108
Exon
Length: 85
Transcript: NM_001100108
Length: 85
Transcript: NM_001100108
Exon
Length: 178
Transcript: NM_001100108
Length: 178
Transcript: NM_001100108
Exon
Length: 185
Transcript: NM_001100108
Length: 185
Transcript: NM_001100108
Exon
Length: 153
Transcript: NM_001100108
Length: 153
Transcript: NM_001100108
Exon
Length: 90
Transcript: NM_001100108
Length: 90
Transcript: NM_001100108
Exon
Length: 174
Transcript: NM_001100108
Length: 174
Transcript: NM_001100108
Exon
Length: 10115
Transcript: NM_001100108
Length: 10115
Transcript: NM_001100108
Intron
Length: 9558
Transcript: NM_001100108
Length: 9558
Transcript: NM_001100108
Intron
Length: 1830
Transcript: NM_001100108
Length: 1830
Transcript: NM_001100108
Intron
Length: 4638
Transcript: NM_001100108
Length: 4638
Transcript: NM_001100108
Intron
Length: 4509
Transcript: NM_001100108
Length: 4509
Transcript: NM_001100108
Intron
Length: 1320
Transcript: NM_001100108
Length: 1320
Transcript: NM_001100108
Intron
Length: 1425
Transcript: NM_001100108
Length: 1425
Transcript: NM_001100108
Intron
Length: 1070
Transcript: NM_001100108
Length: 1070
Transcript: NM_001100108
Intron
Length: 2301
Transcript: NM_001100108
Length: 2301
Transcript: NM_001100108
Intron
Length: 2479
Transcript: NM_001100108
Length: 2479
Transcript: NM_001100108
Intron
Length: 1853
Transcript: NM_001100108
Length: 1853
Transcript: NM_001100108
Intron
Length: 840
Transcript: NM_001100108
Length: 840
Transcript: NM_001100108
Reaction
Expected peak: 267
16M
rs.ABL2.F1
rs.ABL2.R1
Expected peak: 267
16M
rs.ABL2.F1
rs.ABL2.R1
Reaction
Expected peak: 267
16.2M
rs.ABL2.F1
rs.ABL2.R1
Expected peak: 267
16.2M
rs.ABL2.F1
rs.ABL2.R1
Reaction
Expected peak: 267
21.3M
rs.ABL2.F1
rs.ABL2.R1
Expected peak: 267
21.3M
rs.ABL2.F1
rs.ABL2.R1
Reaction
Expected peak: 267
4M
rs.ABL2.F1
rs.ABL2.R1
Expected peak: 267
4M
rs.ABL2.F1
rs.ABL2.R1
Reaction
Expected peak: 267
20.6M
rs.ABL2.F1
rs.ABL2.R1
Expected peak: 267
20.6M
rs.ABL2.F1
rs.ABL2.R1
Reaction
Expected peak: 267
8.8M
rs.ABL2.F1
rs.ABL2.R1
Expected peak: 267
8.8M
rs.ABL2.F1
rs.ABL2.R1
Reaction
Expected peak: 267
18M
rs.ABL2.F1
rs.ABL2.R1
Expected peak: 267
18M
rs.ABL2.F1
rs.ABL2.R1
Reaction
Expected peak: 267
18.5M
rs.ABL2.F1
rs.ABL2.R1
Expected peak: 267
18.5M
rs.ABL2.F1
rs.ABL2.R1
Reaction
Expected peak: 267
13.1M
rs.ABL2.F1
rs.ABL2.R1
Expected peak: 267
13.1M
rs.ABL2.F1
rs.ABL2.R1
Reaction
Expected peak: 267
14.8M
rs.ABL2.F1
rs.ABL2.R1
Expected peak: 267
14.8M
rs.ABL2.F1
rs.ABL2.R1
Exon
Length: 144
Transcript: NM_005158
Length: 144
Transcript: NM_005158
Exon
Length: 171
Transcript: NM_005158
Length: 171
Transcript: NM_005158
Exon
Length: 296
Transcript: NM_005158
Length: 296
Transcript: NM_005158
Exon
Length: 273
Transcript: NM_005158
Length: 273
Transcript: NM_005158
Exon
Length: 85
Transcript: NM_005158
Length: 85
Transcript: NM_005158
Exon
Length: 178
Transcript: NM_005158
Length: 178
Transcript: NM_005158
Exon
Length: 185
Transcript: NM_005158
Length: 185
Transcript: NM_005158
Exon
Length: 153
Transcript: NM_005158
Length: 153
Transcript: NM_005158
Exon
Length: 90
Transcript: NM_005158
Length: 90
Transcript: NM_005158
Exon
Length: 174
Transcript: NM_005158
Length: 174
Transcript: NM_005158
Exon
Length: 10115
Transcript: NM_005158
Length: 10115
Transcript: NM_005158
Intron
Length: 11451
Transcript: NM_005158
Length: 11451
Transcript: NM_005158
Intron
Length: 4638
Transcript: NM_005158
Length: 4638
Transcript: NM_005158
Intron
Length: 4509
Transcript: NM_005158
Length: 4509
Transcript: NM_005158
Intron
Length: 1320
Transcript: NM_005158
Length: 1320
Transcript: NM_005158
Intron
Length: 1425
Transcript: NM_005158
Length: 1425
Transcript: NM_005158
Intron
Length: 1070
Transcript: NM_005158
Length: 1070
Transcript: NM_005158
Intron
Length: 2301
Transcript: NM_005158
Length: 2301
Transcript: NM_005158
Intron
Length: 2479
Transcript: NM_005158
Length: 2479
Transcript: NM_005158
Intron
Length: 1853
Transcript: NM_005158
Length: 1853
Transcript: NM_005158
Intron
Length: 840
Transcript: NM_005158
Length: 840
Transcript: NM_005158
Reaction
Expected peak: 204
30.3M
rs.ABL2.F1
rs.ABL2.R1
Expected peak: 204
30.3M
rs.ABL2.F1
rs.ABL2.R1
Reaction
Expected peak: 204
32.9M
rs.ABL2.F1
rs.ABL2.R1
Expected peak: 204
32.9M
rs.ABL2.F1
rs.ABL2.R1
Reaction
Expected peak: 204
52.2M
rs.ABL2.F1
rs.ABL2.R1
Expected peak: 204
52.2M
rs.ABL2.F1
rs.ABL2.R1
Reaction
Expected peak: 204
5.4M
rs.ABL2.F1
rs.ABL2.R1
Expected peak: 204
5.4M
rs.ABL2.F1
rs.ABL2.R1
Reaction
Expected peak: 204
44.2M
rs.ABL2.F1
rs.ABL2.R1
Expected peak: 204
44.2M
rs.ABL2.F1
rs.ABL2.R1
Reaction
Expected peak: 204
14.2M
rs.ABL2.F1
rs.ABL2.R1
Expected peak: 204
14.2M
rs.ABL2.F1
rs.ABL2.R1
Reaction
Expected peak: 204
53.7M
rs.ABL2.F1
rs.ABL2.R1
Expected peak: 204
53.7M
rs.ABL2.F1
rs.ABL2.R1
Reaction
Expected peak: 204
40.5M
rs.ABL2.F1
rs.ABL2.R1
Expected peak: 204
40.5M
rs.ABL2.F1
rs.ABL2.R1
Reaction
Expected peak: 204
30.8M
rs.ABL2.F1
rs.ABL2.R1
Expected peak: 204
30.8M
rs.ABL2.F1
rs.ABL2.R1
Reaction
Expected peak: 204
31.3M
rs.ABL2.F1
rs.ABL2.R1
Expected peak: 204
31.3M
rs.ABL2.F1
rs.ABL2.R1
Exon
Length: 392
Transcript: NM_007314
Length: 392
Transcript: NM_007314
Exon
Length: 63
Transcript: NM_007314
Length: 63
Transcript: NM_007314
Exon
Length: 171
Transcript: NM_007314
Length: 171
Transcript: NM_007314
Exon
Length: 296
Transcript: NM_007314
Length: 296
Transcript: NM_007314
Exon
Length: 273
Transcript: NM_007314
Length: 273
Transcript: NM_007314
Exon
Length: 85
Transcript: NM_007314
Length: 85
Transcript: NM_007314
Exon
Length: 178
Transcript: NM_007314
Length: 178
Transcript: NM_007314
Exon
Length: 185
Transcript: NM_007314
Length: 185
Transcript: NM_007314
Exon
Length: 153
Transcript: NM_007314
Length: 153
Transcript: NM_007314
Exon
Length: 90
Transcript: NM_007314
Length: 90
Transcript: NM_007314
Exon
Length: 174
Transcript: NM_007314
Length: 174
Transcript: NM_007314
Exon
Length: 10115
Transcript: NM_007314
Length: 10115
Transcript: NM_007314
Intron
Length: 95866
Transcript: NM_007314
Length: 95866
Transcript: NM_007314
Intron
Length: 1830
Transcript: NM_007314
Length: 1830
Transcript: NM_007314
Intron
Length: 4638
Transcript: NM_007314
Length: 4638
Transcript: NM_007314
Intron
Length: 4509
Transcript: NM_007314
Length: 4509
Transcript: NM_007314
Intron
Length: 1320
Transcript: NM_007314
Length: 1320
Transcript: NM_007314
Intron
Length: 1425
Transcript: NM_007314
Length: 1425
Transcript: NM_007314
Intron
Length: 1070
Transcript: NM_007314
Length: 1070
Transcript: NM_007314
Intron
Length: 2301
Transcript: NM_007314
Length: 2301
Transcript: NM_007314
Intron
Length: 2479
Transcript: NM_007314
Length: 2479
Transcript: NM_007314
Intron
Length: 1853
Transcript: NM_007314
Length: 1853
Transcript: NM_007314
Intron
Length: 840
Transcript: NM_007314
Length: 840
Transcript: NM_007314
rs.ABL2.R1
AAGTGCAACGAAGAGATTAGGGT
AAGTGCAACGAAGAGATTAGGGT
rs.ABL2.F1
AGTTATGGCAGAGATCAGGACAC
AGTTATGGCAGAGATCAGGACAC