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Supplementary data
RBFOX2 enforces the mesenchymal splicing signature in normal and cancer tissues
2. Full RefSeq screen / 9 cell lines
Transcript map
: ABCG1 HS 578T
Exon
Length: 148
Transcript: NM_004915
Length: 148
Transcript: NM_004915
Exon
Length: 244
Transcript: NM_004915
Length: 244
Transcript: NM_004915
Exon
Length: 118
Transcript: NM_004915
Length: 118
Transcript: NM_004915
Exon
Length: 133
Transcript: NM_004915
Length: 133
Transcript: NM_004915
Exon
Length: 51
Transcript: NM_004915
Length: 51
Transcript: NM_004915
Exon
Length: 146
Transcript: NM_004915
Length: 146
Transcript: NM_004915
Exon
Length: 124
Transcript: NM_004915
Length: 124
Transcript: NM_004915
Exon
Length: 115
Transcript: NM_004915
Length: 115
Transcript: NM_004915
Exon
Length: 185
Transcript: NM_004915
Length: 185
Transcript: NM_004915
Exon
Length: 102
Transcript: NM_004915
Length: 102
Transcript: NM_004915
Exon
Length: 169
Transcript: NM_004915
Length: 169
Transcript: NM_004915
Exon
Length: 101
Transcript: NM_004915
Length: 101
Transcript: NM_004915
Exon
Length: 159
Transcript: NM_004915
Length: 159
Transcript: NM_004915
Exon
Length: 119
Transcript: NM_004915
Length: 119
Transcript: NM_004915
Exon
Length: 1081
Transcript: NM_004915
Length: 1081
Transcript: NM_004915
Intron
Length: 6366
Transcript: NM_004915
Length: 6366
Transcript: NM_004915
Intron
Length: 45155
Transcript: NM_004915
Length: 45155
Transcript: NM_004915
Intron
Length: 2115
Transcript: NM_004915
Length: 2115
Transcript: NM_004915
Intron
Length: 3459
Transcript: NM_004915
Length: 3459
Transcript: NM_004915
Intron
Length: 5328
Transcript: NM_004915
Length: 5328
Transcript: NM_004915
Intron
Length: 2140
Transcript: NM_004915
Length: 2140
Transcript: NM_004915
Intron
Length: 1196
Transcript: NM_004915
Length: 1196
Transcript: NM_004915
Intron
Length: 1894
Transcript: NM_004915
Length: 1894
Transcript: NM_004915
Intron
Length: 137
Transcript: NM_004915
Length: 137
Transcript: NM_004915
Intron
Length: 1737
Transcript: NM_004915
Length: 1737
Transcript: NM_004915
Intron
Length: 873
Transcript: NM_004915
Length: 873
Transcript: NM_004915
Intron
Length: 305
Transcript: NM_004915
Length: 305
Transcript: NM_004915
Intron
Length: 2885
Transcript: NM_004915
Length: 2885
Transcript: NM_004915
Intron
Length: 1503
Transcript: NM_004915
Length: 1503
Transcript: NM_004915
Reaction
Expected peak: 161
0M
refseq_ABCG1.F1
refseq_ABCG1.R1
Expected peak: 161
0M
refseq_ABCG1.F1
refseq_ABCG1.R1
Exon
Length: 148
Transcript: NM_016818
Length: 148
Transcript: NM_016818
Exon
Length: 244
Transcript: NM_016818
Length: 244
Transcript: NM_016818
Exon
Length: 118
Transcript: NM_016818
Length: 118
Transcript: NM_016818
Exon
Length: 133
Transcript: NM_016818
Length: 133
Transcript: NM_016818
Exon
Length: 51
Transcript: NM_016818
Length: 51
Transcript: NM_016818
Exon
Length: 146
Transcript: NM_016818
Length: 146
Transcript: NM_016818
Exon
Length: 124
Transcript: NM_016818
Length: 124
Transcript: NM_016818
Exon
Length: 115
Transcript: NM_016818
Length: 115
Transcript: NM_016818
Exon
Length: 149
Transcript: NM_016818
Length: 149
Transcript: NM_016818
Exon
Length: 102
Transcript: NM_016818
Length: 102
Transcript: NM_016818
Exon
Length: 169
Transcript: NM_016818
Length: 169
Transcript: NM_016818
Exon
Length: 101
Transcript: NM_016818
Length: 101
Transcript: NM_016818
Exon
Length: 159
Transcript: NM_016818
Length: 159
Transcript: NM_016818
Exon
Length: 119
Transcript: NM_016818
Length: 119
Transcript: NM_016818
Exon
Length: 1081
Transcript: NM_016818
Length: 1081
Transcript: NM_016818
Intron
Length: 6366
Transcript: NM_016818
Length: 6366
Transcript: NM_016818
Intron
Length: 45155
Transcript: NM_016818
Length: 45155
Transcript: NM_016818
Intron
Length: 2115
Transcript: NM_016818
Length: 2115
Transcript: NM_016818
Intron
Length: 3459
Transcript: NM_016818
Length: 3459
Transcript: NM_016818
Intron
Length: 5328
Transcript: NM_016818
Length: 5328
Transcript: NM_016818
Intron
Length: 2140
Transcript: NM_016818
Length: 2140
Transcript: NM_016818
Intron
Length: 1196
Transcript: NM_016818
Length: 1196
Transcript: NM_016818
Intron
Length: 1894
Transcript: NM_016818
Length: 1894
Transcript: NM_016818
Intron
Length: 173
Transcript: NM_016818
Length: 173
Transcript: NM_016818
Intron
Length: 1737
Transcript: NM_016818
Length: 1737
Transcript: NM_016818
Intron
Length: 873
Transcript: NM_016818
Length: 873
Transcript: NM_016818
Intron
Length: 305
Transcript: NM_016818
Length: 305
Transcript: NM_016818
Intron
Length: 2885
Transcript: NM_016818
Length: 2885
Transcript: NM_016818
Intron
Length: 1503
Transcript: NM_016818
Length: 1503
Transcript: NM_016818
Reaction
Expected peak: 125
0M
refseq_ABCG1.F1
refseq_ABCG1.R1
Expected peak: 125
0M
refseq_ABCG1.F1
refseq_ABCG1.R1
Exon
Length: 149
Transcript: NM_207174
Length: 149
Transcript: NM_207174
Exon
Length: 244
Transcript: NM_207174
Length: 244
Transcript: NM_207174
Exon
Length: 118
Transcript: NM_207174
Length: 118
Transcript: NM_207174
Exon
Length: 133
Transcript: NM_207174
Length: 133
Transcript: NM_207174
Exon
Length: 51
Transcript: NM_207174
Length: 51
Transcript: NM_207174
Exon
Length: 146
Transcript: NM_207174
Length: 146
Transcript: NM_207174
Exon
Length: 124
Transcript: NM_207174
Length: 124
Transcript: NM_207174
Exon
Length: 115
Transcript: NM_207174
Length: 115
Transcript: NM_207174
Exon
Length: 149
Transcript: NM_207174
Length: 149
Transcript: NM_207174
Exon
Length: 102
Transcript: NM_207174
Length: 102
Transcript: NM_207174
Exon
Length: 169
Transcript: NM_207174
Length: 169
Transcript: NM_207174
Exon
Length: 101
Transcript: NM_207174
Length: 101
Transcript: NM_207174
Exon
Length: 159
Transcript: NM_207174
Length: 159
Transcript: NM_207174
Exon
Length: 119
Transcript: NM_207174
Length: 119
Transcript: NM_207174
Exon
Length: 1081
Transcript: NM_207174
Length: 1081
Transcript: NM_207174
Intron
Length: 5624
Transcript: NM_207174
Length: 5624
Transcript: NM_207174
Intron
Length: 45155
Transcript: NM_207174
Length: 45155
Transcript: NM_207174
Intron
Length: 2115
Transcript: NM_207174
Length: 2115
Transcript: NM_207174
Intron
Length: 3459
Transcript: NM_207174
Length: 3459
Transcript: NM_207174
Intron
Length: 5328
Transcript: NM_207174
Length: 5328
Transcript: NM_207174
Intron
Length: 2140
Transcript: NM_207174
Length: 2140
Transcript: NM_207174
Intron
Length: 1196
Transcript: NM_207174
Length: 1196
Transcript: NM_207174
Intron
Length: 1894
Transcript: NM_207174
Length: 1894
Transcript: NM_207174
Intron
Length: 173
Transcript: NM_207174
Length: 173
Transcript: NM_207174
Intron
Length: 1737
Transcript: NM_207174
Length: 1737
Transcript: NM_207174
Intron
Length: 873
Transcript: NM_207174
Length: 873
Transcript: NM_207174
Intron
Length: 305
Transcript: NM_207174
Length: 305
Transcript: NM_207174
Intron
Length: 2885
Transcript: NM_207174
Length: 2885
Transcript: NM_207174
Intron
Length: 1503
Transcript: NM_207174
Length: 1503
Transcript: NM_207174
Reaction
Expected peak: 125
0M
refseq_ABCG1.F1
refseq_ABCG1.R1
Expected peak: 125
0M
refseq_ABCG1.F1
refseq_ABCG1.R1
Exon
Length: 161
Transcript: NM_207627
Length: 161
Transcript: NM_207627
Exon
Length: 147
Transcript: NM_207627
Length: 147
Transcript: NM_207627
Exon
Length: 244
Transcript: NM_207627
Length: 244
Transcript: NM_207627
Exon
Length: 118
Transcript: NM_207627
Length: 118
Transcript: NM_207627
Exon
Length: 133
Transcript: NM_207627
Length: 133
Transcript: NM_207627
Exon
Length: 51
Transcript: NM_207627
Length: 51
Transcript: NM_207627
Exon
Length: 146
Transcript: NM_207627
Length: 146
Transcript: NM_207627
Exon
Length: 124
Transcript: NM_207627
Length: 124
Transcript: NM_207627
Exon
Length: 115
Transcript: NM_207627
Length: 115
Transcript: NM_207627
Exon
Length: 149
Transcript: NM_207627
Length: 149
Transcript: NM_207627
Exon
Length: 102
Transcript: NM_207627
Length: 102
Transcript: NM_207627
Exon
Length: 169
Transcript: NM_207627
Length: 169
Transcript: NM_207627
Exon
Length: 101
Transcript: NM_207627
Length: 101
Transcript: NM_207627
Exon
Length: 159
Transcript: NM_207627
Length: 159
Transcript: NM_207627
Exon
Length: 119
Transcript: NM_207627
Length: 119
Transcript: NM_207627
Exon
Length: 1081
Transcript: NM_207627
Length: 1081
Transcript: NM_207627
Intron
Length: 1727
Transcript: NM_207627
Length: 1727
Transcript: NM_207627
Intron
Length: 23947
Transcript: NM_207627
Length: 23947
Transcript: NM_207627
Intron
Length: 45155
Transcript: NM_207627
Length: 45155
Transcript: NM_207627
Intron
Length: 2115
Transcript: NM_207627
Length: 2115
Transcript: NM_207627
Intron
Length: 3459
Transcript: NM_207627
Length: 3459
Transcript: NM_207627
Intron
Length: 5328
Transcript: NM_207627
Length: 5328
Transcript: NM_207627
Intron
Length: 2140
Transcript: NM_207627
Length: 2140
Transcript: NM_207627
Intron
Length: 1196
Transcript: NM_207627
Length: 1196
Transcript: NM_207627
Intron
Length: 1894
Transcript: NM_207627
Length: 1894
Transcript: NM_207627
Intron
Length: 173
Transcript: NM_207627
Length: 173
Transcript: NM_207627
Intron
Length: 1737
Transcript: NM_207627
Length: 1737
Transcript: NM_207627
Intron
Length: 873
Transcript: NM_207627
Length: 873
Transcript: NM_207627
Intron
Length: 305
Transcript: NM_207627
Length: 305
Transcript: NM_207627
Intron
Length: 2885
Transcript: NM_207627
Length: 2885
Transcript: NM_207627
Intron
Length: 1503
Transcript: NM_207627
Length: 1503
Transcript: NM_207627
Reaction
Expected peak: 125
0M
refseq_ABCG1.F1
refseq_ABCG1.R1
Expected peak: 125
0M
refseq_ABCG1.F1
refseq_ABCG1.R1
Exon
Length: 38
Transcript: NM_207628
Length: 38
Transcript: NM_207628
Exon
Length: 147
Transcript: NM_207628
Length: 147
Transcript: NM_207628
Exon
Length: 41
Transcript: NM_207628
Length: 41
Transcript: NM_207628
Exon
Length: 244
Transcript: NM_207628
Length: 244
Transcript: NM_207628
Exon
Length: 118
Transcript: NM_207628
Length: 118
Transcript: NM_207628
Exon
Length: 133
Transcript: NM_207628
Length: 133
Transcript: NM_207628
Exon
Length: 51
Transcript: NM_207628
Length: 51
Transcript: NM_207628
Exon
Length: 146
Transcript: NM_207628
Length: 146
Transcript: NM_207628
Exon
Length: 124
Transcript: NM_207628
Length: 124
Transcript: NM_207628
Exon
Length: 115
Transcript: NM_207628
Length: 115
Transcript: NM_207628
Exon
Length: 149
Transcript: NM_207628
Length: 149
Transcript: NM_207628
Exon
Length: 102
Transcript: NM_207628
Length: 102
Transcript: NM_207628
Exon
Length: 169
Transcript: NM_207628
Length: 169
Transcript: NM_207628
Exon
Length: 101
Transcript: NM_207628
Length: 101
Transcript: NM_207628
Exon
Length: 159
Transcript: NM_207628
Length: 159
Transcript: NM_207628
Exon
Length: 119
Transcript: NM_207628
Length: 119
Transcript: NM_207628
Exon
Length: 1081
Transcript: NM_207628
Length: 1081
Transcript: NM_207628
Intron
Length: 1727
Transcript: NM_207628
Length: 1727
Transcript: NM_207628
Intron
Length: 5222
Transcript: NM_207628
Length: 5222
Transcript: NM_207628
Intron
Length: 18684
Transcript: NM_207628
Length: 18684
Transcript: NM_207628
Intron
Length: 45155
Transcript: NM_207628
Length: 45155
Transcript: NM_207628
Intron
Length: 2115
Transcript: NM_207628
Length: 2115
Transcript: NM_207628
Intron
Length: 3459
Transcript: NM_207628
Length: 3459
Transcript: NM_207628
Intron
Length: 5328
Transcript: NM_207628
Length: 5328
Transcript: NM_207628
Intron
Length: 2140
Transcript: NM_207628
Length: 2140
Transcript: NM_207628
Intron
Length: 1196
Transcript: NM_207628
Length: 1196
Transcript: NM_207628
Intron
Length: 1894
Transcript: NM_207628
Length: 1894
Transcript: NM_207628
Intron
Length: 173
Transcript: NM_207628
Length: 173
Transcript: NM_207628
Intron
Length: 1737
Transcript: NM_207628
Length: 1737
Transcript: NM_207628
Intron
Length: 873
Transcript: NM_207628
Length: 873
Transcript: NM_207628
Intron
Length: 305
Transcript: NM_207628
Length: 305
Transcript: NM_207628
Intron
Length: 2885
Transcript: NM_207628
Length: 2885
Transcript: NM_207628
Intron
Length: 1503
Transcript: NM_207628
Length: 1503
Transcript: NM_207628
Reaction
Expected peak: 125
0M
refseq_ABCG1.F1
refseq_ABCG1.R1
Expected peak: 125
0M
refseq_ABCG1.F1
refseq_ABCG1.R1
Exon
Length: 112
Transcript: NM_207629
Length: 112
Transcript: NM_207629
Exon
Length: 244
Transcript: NM_207629
Length: 244
Transcript: NM_207629
Exon
Length: 118
Transcript: NM_207629
Length: 118
Transcript: NM_207629
Exon
Length: 133
Transcript: NM_207629
Length: 133
Transcript: NM_207629
Exon
Length: 51
Transcript: NM_207629
Length: 51
Transcript: NM_207629
Exon
Length: 146
Transcript: NM_207629
Length: 146
Transcript: NM_207629
Exon
Length: 124
Transcript: NM_207629
Length: 124
Transcript: NM_207629
Exon
Length: 115
Transcript: NM_207629
Length: 115
Transcript: NM_207629
Exon
Length: 149
Transcript: NM_207629
Length: 149
Transcript: NM_207629
Exon
Length: 102
Transcript: NM_207629
Length: 102
Transcript: NM_207629
Exon
Length: 169
Transcript: NM_207629
Length: 169
Transcript: NM_207629
Exon
Length: 101
Transcript: NM_207629
Length: 101
Transcript: NM_207629
Exon
Length: 159
Transcript: NM_207629
Length: 159
Transcript: NM_207629
Exon
Length: 119
Transcript: NM_207629
Length: 119
Transcript: NM_207629
Exon
Length: 1081
Transcript: NM_207629
Length: 1081
Transcript: NM_207629
Intron
Length: 9482
Transcript: NM_207629
Length: 9482
Transcript: NM_207629
Intron
Length: 45155
Transcript: NM_207629
Length: 45155
Transcript: NM_207629
Intron
Length: 2115
Transcript: NM_207629
Length: 2115
Transcript: NM_207629
Intron
Length: 3459
Transcript: NM_207629
Length: 3459
Transcript: NM_207629
Intron
Length: 5328
Transcript: NM_207629
Length: 5328
Transcript: NM_207629
Intron
Length: 2140
Transcript: NM_207629
Length: 2140
Transcript: NM_207629
Intron
Length: 1196
Transcript: NM_207629
Length: 1196
Transcript: NM_207629
Intron
Length: 1894
Transcript: NM_207629
Length: 1894
Transcript: NM_207629
Intron
Length: 173
Transcript: NM_207629
Length: 173
Transcript: NM_207629
Intron
Length: 1737
Transcript: NM_207629
Length: 1737
Transcript: NM_207629
Intron
Length: 873
Transcript: NM_207629
Length: 873
Transcript: NM_207629
Intron
Length: 305
Transcript: NM_207629
Length: 305
Transcript: NM_207629
Intron
Length: 2885
Transcript: NM_207629
Length: 2885
Transcript: NM_207629
Intron
Length: 1503
Transcript: NM_207629
Length: 1503
Transcript: NM_207629
Reaction
Expected peak: 125
0M
refseq_ABCG1.F1
refseq_ABCG1.R1
Expected peak: 125
0M
refseq_ABCG1.F1
refseq_ABCG1.R1
Exon
Length: 533
Transcript: NM_207630
Length: 533
Transcript: NM_207630
Exon
Length: 188
Transcript: NM_207630
Length: 188
Transcript: NM_207630
Exon
Length: 151
Transcript: NM_207630
Length: 151
Transcript: NM_207630
Exon
Length: 118
Transcript: NM_207630
Length: 118
Transcript: NM_207630
Exon
Length: 133
Transcript: NM_207630
Length: 133
Transcript: NM_207630
Exon
Length: 51
Transcript: NM_207630
Length: 51
Transcript: NM_207630
Exon
Length: 146
Transcript: NM_207630
Length: 146
Transcript: NM_207630
Exon
Length: 124
Transcript: NM_207630
Length: 124
Transcript: NM_207630
Exon
Length: 115
Transcript: NM_207630
Length: 115
Transcript: NM_207630
Exon
Length: 185
Transcript: NM_207630
Length: 185
Transcript: NM_207630
Exon
Length: 102
Transcript: NM_207630
Length: 102
Transcript: NM_207630
Exon
Length: 169
Transcript: NM_207630
Length: 169
Transcript: NM_207630
Exon
Length: 101
Transcript: NM_207630
Length: 101
Transcript: NM_207630
Exon
Length: 159
Transcript: NM_207630
Length: 159
Transcript: NM_207630
Exon
Length: 119
Transcript: NM_207630
Length: 119
Transcript: NM_207630
Exon
Length: 1081
Transcript: NM_207630
Length: 1081
Transcript: NM_207630
Intron
Length: 2698
Transcript: NM_207630
Length: 2698
Transcript: NM_207630
Intron
Length: 486
Transcript: NM_207630
Length: 486
Transcript: NM_207630
Intron
Length: 10930
Transcript: NM_207630
Length: 10930
Transcript: NM_207630
Intron
Length: 2115
Transcript: NM_207630
Length: 2115
Transcript: NM_207630
Intron
Length: 3459
Transcript: NM_207630
Length: 3459
Transcript: NM_207630
Intron
Length: 5328
Transcript: NM_207630
Length: 5328
Transcript: NM_207630
Intron
Length: 2140
Transcript: NM_207630
Length: 2140
Transcript: NM_207630
Intron
Length: 1196
Transcript: NM_207630
Length: 1196
Transcript: NM_207630
Intron
Length: 1894
Transcript: NM_207630
Length: 1894
Transcript: NM_207630
Intron
Length: 137
Transcript: NM_207630
Length: 137
Transcript: NM_207630
Intron
Length: 1737
Transcript: NM_207630
Length: 1737
Transcript: NM_207630
Intron
Length: 873
Transcript: NM_207630
Length: 873
Transcript: NM_207630
Intron
Length: 305
Transcript: NM_207630
Length: 305
Transcript: NM_207630
Intron
Length: 2885
Transcript: NM_207630
Length: 2885
Transcript: NM_207630
Intron
Length: 1503
Transcript: NM_207630
Length: 1503
Transcript: NM_207630
Reaction
Expected peak: 161
0M
refseq_ABCG1.F1
refseq_ABCG1.R1
Expected peak: 161
0M
refseq_ABCG1.F1
refseq_ABCG1.R1
refseq_ABCG1.F1
CTGGTGAGAGCGGTTCGG
CTGGTGAGAGCGGTTCGG
refseq_ABCG1.R1
CCTTCCATGGACGAGGAGTC
CCTTCCATGGACGAGGAGTC