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Supplementary data
RBFOX2 enforces the mesenchymal splicing signature in normal and cancer tissues
3. 47 Cancer and apoptosis ASEs (CASita plate) PCR designs
Design Maps
: view primers alignment
Click a field in the Map column to view a schematic representation of the primers aligned on the gene's transcript. Click a field in the UCSC GB column to view the gene in UCSC Genome Browser. All designed primers can be viewed on the UCSC Genome Browser as an uploadable custom track using the BED file below.
Click here to upload the custom track automatically (this will open a new page to the UCSC Genome Browser)
| UCSC GB | Map | Gene Symbol(s) | Gene Accession(s) | Primer Pair(s) | Gene Source Tag(s) | Species | Primer(s) | Reaction(s) |
|---|---|---|---|---|---|---|---|---|
| view | view | AKAP13 | AKAP13 | AKAP13 (AKAP13.u.f.21|AKAP13.u.r.24) | AceView/37.Aug10; UCSCGene/37.2011-12-21 | Human | 2 | 1 |
| view | view | AKIP1 | AKIP1 | AKIP1 (C11orf17-F1|C11orf17-R1) | UCSCGene/37.2011-12-21 | Human | 2 | 1 |
| view | view | APAF1 | APAF1 | APAF1 (APAF1.F8|APAF1.R8) | AceView/37.Aug10; UCSCGene/37.2011-12-21 | Human | 2 | 1 |
| view | view | ATG5 | ATG5 | APG5L (APG5L.u.f.9|APG5L.u.r.5) | AceView/37.Aug10; UCSCGene/37.2011-12-21 | Human | 2 | 1 |
| view | view | AXIN1 | AXIN1 | AXIN1 (AXIN1.u.f.11|AXIN1.R5) | AceView/37.Aug10; UCSCGene/37.2011-12-21 | Human | 2 | 1 |
| view | view | BCL2L1 | BCL2L1 | BCL2L1-3'ss (BCL2L1.u.f.5|BCL2L1.b.r.24) | AceView/37.Aug10; UCSCGene/37.2011-12-21 | Human | 2 | 1 |
| view | view | BCL2L12 | BCL2L12 | BCL2L12 (BCL2L12-3|BCL2L12-4) | AceView/37.Aug10; UCSCGene/37.2011-12-21 | Human | 2 | 1 |
| view | view | CADM1 | CADM1 | IGSF4 (IGSF4.F6|IGSF4.R1) | AceView/37.Aug10; UCSCGene/37.2011-12-21 | Human | 2 | 1 |
| view | view | CHEK2 | CHEK2 | CHEK2 (CHEK2.u.f.31|CHEK2.u.r.29) | AceView/37.Aug10; UCSCGene/37.2011-12-21 | Human | 2 | 1 |
| view | view | CLIP1 | CLIP1 | CLIP1 (RSN.F35|RSN.R13) | AceView/37.Aug10; UCSCGene/37.2011-12-21 | Human | 2 | 1 |
| view | view | DBF4B | DBF4B | DRF1-3'ss (DRF1.F1|DRF1.R1) | AceView/37.Aug10; UCSCGene/37.2011-12-21 | Human | 2 | 1 |
| view | view | DDR1 | DDR1 | DDR1 (DDR1.F8|DDR1.R9) | AceView/37.Aug10; UCSCGene/37.2011-12-21 | Human | 2 | 1 |
| view | view | DNMT3B | DNMT3B | DNMT3B-multiEx (DNMT3B.u.f.26|DNMT3B.u.r.28) | AceView/37.Aug10; UCSCGene/37.2011-12-21 | Human | 2 | 1 |
| view | view | ECT2 | ECT2 | ECT2 (ECT2.F12|ECT2.R11) | AceView/37.Aug10; UCSCGene/37.2011-12-21 | Human | 2 | 1 |
| view | view | F3 | F3 | F3 (F3.F2|F3.R2) | AceView/37.Aug10; UCSCGene/37.2011-12-21 | Human | 2 | 1 |
| view | view | FANCA | FANCA | FANCA (FANCA.F13|FANCA.R13) | AceView/37.Aug10; UCSCGene/37.2011-12-21 | Human | 2 | 1 |
| view | view | FANCL | FANCL | FANCL-multiEx (FANCL.F9|FANCL.R5) | AceView/37.Aug10; UCSCGene/37.2011-12-21 | Human | 2 | 1 |
| view | view | FGFR1 | FGFR1 | FGFR1 (FGFR1.F11|FGFR1.R11) | AceView/37.Aug10; UCSCGene/37.2011-12-21 | Human | 2 | 1 |
| view | view | FGFR1OP;FGFR1OPandCCR6 | FGFR1OP;FGFR1OPandCCR6 | FGFR1OP (FGFR1OP.u.f.10|FGFR1OP.u.r.12) | AceView/37.Aug10; UCSCGene/37.2011-12-21 | Human | 2 | 1 |
| view | view | FN1 | FN1 | FN1-EDA (FN1.u.f.40|FN1.u.r.45);FN1-EDB (FN1.u.f.30 | FN1.u.r.34);FN1-IIICS-intron (FN1.u.f.56 | FN1.u.r.67) | AceView/37.Aug10; UCSCGene/37.2011-12-21 | Human |
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