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Supplementary data
RBFOX2 enforces the mesenchymal splicing signature in normal and cancer tissues
7. 26 switch-like targets from epithelium and mesenchyme (fetal colon) in RBFOX2, MBNL1, PTBP and ESRP knockdowns
Transcript map
: MAP3K7 Control (MDA-MB-231)
Exon
Length: 882
Transcript: AK055901
Length: 882
Transcript: AK055901
Exon
Length: 106
Transcript: AK055901
Length: 106
Transcript: AK055901
Exon
Length: 62
Transcript: AK055901
Length: 62
Transcript: AK055901
Exon
Length: 116
Transcript: AK055901
Length: 116
Transcript: AK055901
Exon
Length: 1048
Transcript: AK055901
Length: 1048
Transcript: AK055901
Intron
Length: 12553
Transcript: AK055901
Length: 12553
Transcript: AK055901
Intron
Length: 4358
Transcript: AK055901
Length: 4358
Transcript: AK055901
Intron
Length: 695
Transcript: AK055901
Length: 695
Transcript: AK055901
Intron
Length: 1765
Transcript: AK055901
Length: 1765
Transcript: AK055901
Exon
Length: 425
Transcript: NM_003188
Length: 425
Transcript: NM_003188
Exon
Length: 111
Transcript: NM_003188
Length: 111
Transcript: NM_003188
Exon
Length: 66
Transcript: NM_003188
Length: 66
Transcript: NM_003188
Exon
Length: 46
Transcript: NM_003188
Length: 46
Transcript: NM_003188
Exon
Length: 139
Transcript: NM_003188
Length: 139
Transcript: NM_003188
Exon
Length: 125
Transcript: NM_003188
Length: 125
Transcript: NM_003188
Exon
Length: 129
Transcript: NM_003188
Length: 129
Transcript: NM_003188
Exon
Length: 131
Transcript: NM_003188
Length: 131
Transcript: NM_003188
Exon
Length: 82
Transcript: NM_003188
Length: 82
Transcript: NM_003188
Exon
Length: 131
Transcript: NM_003188
Length: 131
Transcript: NM_003188
Exon
Length: 130
Transcript: NM_003188
Length: 130
Transcript: NM_003188
Exon
Length: 65
Transcript: NM_003188
Length: 65
Transcript: NM_003188
Exon
Length: 106
Transcript: NM_003188
Length: 106
Transcript: NM_003188
Exon
Length: 62
Transcript: NM_003188
Length: 62
Transcript: NM_003188
Exon
Length: 116
Transcript: NM_003188
Length: 116
Transcript: NM_003188
Exon
Length: 1048
Transcript: NM_003188
Length: 1048
Transcript: NM_003188
Intron
Length: 14956
Transcript: NM_003188
Length: 14956
Transcript: NM_003188
Intron
Length: 3073
Transcript: NM_003188
Length: 3073
Transcript: NM_003188
Intron
Length: 6890
Transcript: NM_003188
Length: 6890
Transcript: NM_003188
Intron
Length: 1407
Transcript: NM_003188
Length: 1407
Transcript: NM_003188
Intron
Length: 3451
Transcript: NM_003188
Length: 3451
Transcript: NM_003188
Intron
Length: 2913
Transcript: NM_003188
Length: 2913
Transcript: NM_003188
Intron
Length: 1278
Transcript: NM_003188
Length: 1278
Transcript: NM_003188
Intron
Length: 1499
Transcript: NM_003188
Length: 1499
Transcript: NM_003188
Intron
Length: 2290
Transcript: NM_003188
Length: 2290
Transcript: NM_003188
Intron
Length: 659
Transcript: NM_003188
Length: 659
Transcript: NM_003188
Intron
Length: 10856
Transcript: NM_003188
Length: 10856
Transcript: NM_003188
Intron
Length: 12553
Transcript: NM_003188
Length: 12553
Transcript: NM_003188
Intron
Length: 4358
Transcript: NM_003188
Length: 4358
Transcript: NM_003188
Intron
Length: 695
Transcript: NM_003188
Length: 695
Transcript: NM_003188
Intron
Length: 1765
Transcript: NM_003188
Length: 1765
Transcript: NM_003188
Reaction
Expected peak: 152
108.5M
refseq_MAP3K7.F3
refseq_MAP3K7.R3
Expected peak: 152
108.5M
refseq_MAP3K7.F3
refseq_MAP3K7.R3
Exon
Length: 425
Transcript: NM_145331
Length: 425
Transcript: NM_145331
Exon
Length: 111
Transcript: NM_145331
Length: 111
Transcript: NM_145331
Exon
Length: 66
Transcript: NM_145331
Length: 66
Transcript: NM_145331
Exon
Length: 46
Transcript: NM_145331
Length: 46
Transcript: NM_145331
Exon
Length: 139
Transcript: NM_145331
Length: 139
Transcript: NM_145331
Exon
Length: 125
Transcript: NM_145331
Length: 125
Transcript: NM_145331
Exon
Length: 129
Transcript: NM_145331
Length: 129
Transcript: NM_145331
Exon
Length: 131
Transcript: NM_145331
Length: 131
Transcript: NM_145331
Exon
Length: 82
Transcript: NM_145331
Length: 82
Transcript: NM_145331
Exon
Length: 131
Transcript: NM_145331
Length: 131
Transcript: NM_145331
Exon
Length: 130
Transcript: NM_145331
Length: 130
Transcript: NM_145331
Exon
Length: 81
Transcript: NM_145331
Length: 81
Transcript: NM_145331
Exon
Length: 65
Transcript: NM_145331
Length: 65
Transcript: NM_145331
Exon
Length: 106
Transcript: NM_145331
Length: 106
Transcript: NM_145331
Exon
Length: 62
Transcript: NM_145331
Length: 62
Transcript: NM_145331
Exon
Length: 116
Transcript: NM_145331
Length: 116
Transcript: NM_145331
Exon
Length: 1048
Transcript: NM_145331
Length: 1048
Transcript: NM_145331
Intron
Length: 14956
Transcript: NM_145331
Length: 14956
Transcript: NM_145331
Intron
Length: 3073
Transcript: NM_145331
Length: 3073
Transcript: NM_145331
Intron
Length: 6890
Transcript: NM_145331
Length: 6890
Transcript: NM_145331
Intron
Length: 1407
Transcript: NM_145331
Length: 1407
Transcript: NM_145331
Intron
Length: 3451
Transcript: NM_145331
Length: 3451
Transcript: NM_145331
Intron
Length: 2913
Transcript: NM_145331
Length: 2913
Transcript: NM_145331
Intron
Length: 1278
Transcript: NM_145331
Length: 1278
Transcript: NM_145331
Intron
Length: 1499
Transcript: NM_145331
Length: 1499
Transcript: NM_145331
Intron
Length: 2290
Transcript: NM_145331
Length: 2290
Transcript: NM_145331
Intron
Length: 659
Transcript: NM_145331
Length: 659
Transcript: NM_145331
Intron
Length: 2625
Transcript: NM_145331
Length: 2625
Transcript: NM_145331
Intron
Length: 8150
Transcript: NM_145331
Length: 8150
Transcript: NM_145331
Intron
Length: 12553
Transcript: NM_145331
Length: 12553
Transcript: NM_145331
Intron
Length: 4358
Transcript: NM_145331
Length: 4358
Transcript: NM_145331
Intron
Length: 695
Transcript: NM_145331
Length: 695
Transcript: NM_145331
Intron
Length: 1765
Transcript: NM_145331
Length: 1765
Transcript: NM_145331
Reaction
Expected peak: 233
3.2M
refseq_MAP3K7.F3
refseq_MAP3K7.R3
Expected peak: 233
3.2M
refseq_MAP3K7.F3
refseq_MAP3K7.R3
Exon
Length: 425
Transcript: NM_145332
Length: 425
Transcript: NM_145332
Exon
Length: 111
Transcript: NM_145332
Length: 111
Transcript: NM_145332
Exon
Length: 66
Transcript: NM_145332
Length: 66
Transcript: NM_145332
Exon
Length: 46
Transcript: NM_145332
Length: 46
Transcript: NM_145332
Exon
Length: 139
Transcript: NM_145332
Length: 139
Transcript: NM_145332
Exon
Length: 125
Transcript: NM_145332
Length: 125
Transcript: NM_145332
Exon
Length: 129
Transcript: NM_145332
Length: 129
Transcript: NM_145332
Exon
Length: 131
Transcript: NM_145332
Length: 131
Transcript: NM_145332
Exon
Length: 82
Transcript: NM_145332
Length: 82
Transcript: NM_145332
Exon
Length: 131
Transcript: NM_145332
Length: 131
Transcript: NM_145332
Exon
Length: 130
Transcript: NM_145332
Length: 130
Transcript: NM_145332
Exon
Length: 81
Transcript: NM_145332
Length: 81
Transcript: NM_145332
Exon
Length: 65
Transcript: NM_145332
Length: 65
Transcript: NM_145332
Exon
Length: 106
Transcript: NM_145332
Length: 106
Transcript: NM_145332
Exon
Length: 62
Transcript: NM_145332
Length: 62
Transcript: NM_145332
Exon
Length: 1048
Transcript: NM_145332
Length: 1048
Transcript: NM_145332
Intron
Length: 14956
Transcript: NM_145332
Length: 14956
Transcript: NM_145332
Intron
Length: 3073
Transcript: NM_145332
Length: 3073
Transcript: NM_145332
Intron
Length: 6890
Transcript: NM_145332
Length: 6890
Transcript: NM_145332
Intron
Length: 1407
Transcript: NM_145332
Length: 1407
Transcript: NM_145332
Intron
Length: 3451
Transcript: NM_145332
Length: 3451
Transcript: NM_145332
Intron
Length: 2913
Transcript: NM_145332
Length: 2913
Transcript: NM_145332
Intron
Length: 1278
Transcript: NM_145332
Length: 1278
Transcript: NM_145332
Intron
Length: 1499
Transcript: NM_145332
Length: 1499
Transcript: NM_145332
Intron
Length: 2290
Transcript: NM_145332
Length: 2290
Transcript: NM_145332
Intron
Length: 659
Transcript: NM_145332
Length: 659
Transcript: NM_145332
Intron
Length: 2625
Transcript: NM_145332
Length: 2625
Transcript: NM_145332
Intron
Length: 8150
Transcript: NM_145332
Length: 8150
Transcript: NM_145332
Intron
Length: 12553
Transcript: NM_145332
Length: 12553
Transcript: NM_145332
Intron
Length: 4358
Transcript: NM_145332
Length: 4358
Transcript: NM_145332
Intron
Length: 2576
Transcript: NM_145332
Length: 2576
Transcript: NM_145332
Reaction
Expected peak: 233
3.2M
refseq_MAP3K7.F3
refseq_MAP3K7.R3
Expected peak: 233
3.2M
refseq_MAP3K7.F3
refseq_MAP3K7.R3
Exon
Length: 425
Transcript: NM_145333
Length: 425
Transcript: NM_145333
Exon
Length: 111
Transcript: NM_145333
Length: 111
Transcript: NM_145333
Exon
Length: 66
Transcript: NM_145333
Length: 66
Transcript: NM_145333
Exon
Length: 46
Transcript: NM_145333
Length: 46
Transcript: NM_145333
Exon
Length: 139
Transcript: NM_145333
Length: 139
Transcript: NM_145333
Exon
Length: 125
Transcript: NM_145333
Length: 125
Transcript: NM_145333
Exon
Length: 129
Transcript: NM_145333
Length: 129
Transcript: NM_145333
Exon
Length: 131
Transcript: NM_145333
Length: 131
Transcript: NM_145333
Exon
Length: 82
Transcript: NM_145333
Length: 82
Transcript: NM_145333
Exon
Length: 131
Transcript: NM_145333
Length: 131
Transcript: NM_145333
Exon
Length: 130
Transcript: NM_145333
Length: 130
Transcript: NM_145333
Exon
Length: 65
Transcript: NM_145333
Length: 65
Transcript: NM_145333
Exon
Length: 106
Transcript: NM_145333
Length: 106
Transcript: NM_145333
Exon
Length: 62
Transcript: NM_145333
Length: 62
Transcript: NM_145333
Exon
Length: 1048
Transcript: NM_145333
Length: 1048
Transcript: NM_145333
Intron
Length: 14956
Transcript: NM_145333
Length: 14956
Transcript: NM_145333
Intron
Length: 3073
Transcript: NM_145333
Length: 3073
Transcript: NM_145333
Intron
Length: 6890
Transcript: NM_145333
Length: 6890
Transcript: NM_145333
Intron
Length: 1407
Transcript: NM_145333
Length: 1407
Transcript: NM_145333
Intron
Length: 3451
Transcript: NM_145333
Length: 3451
Transcript: NM_145333
Intron
Length: 2913
Transcript: NM_145333
Length: 2913
Transcript: NM_145333
Intron
Length: 1278
Transcript: NM_145333
Length: 1278
Transcript: NM_145333
Intron
Length: 1499
Transcript: NM_145333
Length: 1499
Transcript: NM_145333
Intron
Length: 2290
Transcript: NM_145333
Length: 2290
Transcript: NM_145333
Intron
Length: 659
Transcript: NM_145333
Length: 659
Transcript: NM_145333
Intron
Length: 10856
Transcript: NM_145333
Length: 10856
Transcript: NM_145333
Intron
Length: 12553
Transcript: NM_145333
Length: 12553
Transcript: NM_145333
Intron
Length: 4358
Transcript: NM_145333
Length: 4358
Transcript: NM_145333
Intron
Length: 2576
Transcript: NM_145333
Length: 2576
Transcript: NM_145333
Reaction
Expected peak: 152
108.5M
refseq_MAP3K7.F3
refseq_MAP3K7.R3
Expected peak: 152
108.5M
refseq_MAP3K7.F3
refseq_MAP3K7.R3
refseq_MAP3K7.F3
ACGTTTAAGCTTGGGAGCCT
ACGTTTAAGCTTGGGAGCCT
refseq_MAP3K7.R3
CTTGGATGGATCTACGTCTTGG
CTTGGATGGATCTACGTCTTGG