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Supplementary data
RBFOX2 enforces the mesenchymal splicing signature in normal and cancer tissues
7. 26 switch-like targets from epithelium and mesenchyme (fetal colon) in RBFOX2, MBNL1, PTBP and ESRP knockdowns
Transcript map
: GPR126 Control (MDA-MB-231)
Exon
Length: 403
Transcript: NM_001032394
Length: 403
Transcript: NM_001032394
Exon
Length: 101
Transcript: NM_001032394
Length: 101
Transcript: NM_001032394
Exon
Length: 342
Transcript: NM_001032394
Length: 342
Transcript: NM_001032394
Exon
Length: 624
Transcript: NM_001032394
Length: 624
Transcript: NM_001032394
Exon
Length: 69
Transcript: NM_001032394
Length: 69
Transcript: NM_001032394
Exon
Length: 86
Transcript: NM_001032394
Length: 86
Transcript: NM_001032394
Exon
Length: 53
Transcript: NM_001032394
Length: 53
Transcript: NM_001032394
Exon
Length: 63
Transcript: NM_001032394
Length: 63
Transcript: NM_001032394
Exon
Length: 143
Transcript: NM_001032394
Length: 143
Transcript: NM_001032394
Exon
Length: 112
Transcript: NM_001032394
Length: 112
Transcript: NM_001032394
Exon
Length: 65
Transcript: NM_001032394
Length: 65
Transcript: NM_001032394
Exon
Length: 211
Transcript: NM_001032394
Length: 211
Transcript: NM_001032394
Exon
Length: 172
Transcript: NM_001032394
Length: 172
Transcript: NM_001032394
Exon
Length: 141
Transcript: NM_001032394
Length: 141
Transcript: NM_001032394
Exon
Length: 120
Transcript: NM_001032394
Length: 120
Transcript: NM_001032394
Exon
Length: 46
Transcript: NM_001032394
Length: 46
Transcript: NM_001032394
Exon
Length: 107
Transcript: NM_001032394
Length: 107
Transcript: NM_001032394
Exon
Length: 128
Transcript: NM_001032394
Length: 128
Transcript: NM_001032394
Exon
Length: 269
Transcript: NM_001032394
Length: 269
Transcript: NM_001032394
Exon
Length: 97
Transcript: NM_001032394
Length: 97
Transcript: NM_001032394
Exon
Length: 284
Transcript: NM_001032394
Length: 284
Transcript: NM_001032394
Exon
Length: 102
Transcript: NM_001032394
Length: 102
Transcript: NM_001032394
Exon
Length: 153
Transcript: NM_001032394
Length: 153
Transcript: NM_001032394
Exon
Length: 46
Transcript: NM_001032394
Length: 46
Transcript: NM_001032394
Exon
Length: 2912
Transcript: NM_001032394
Length: 2912
Transcript: NM_001032394
Intron
Length: 7212
Transcript: NM_001032394
Length: 7212
Transcript: NM_001032394
Intron
Length: 57924
Transcript: NM_001032394
Length: 57924
Transcript: NM_001032394
Intron
Length: 2259
Transcript: NM_001032394
Length: 2259
Transcript: NM_001032394
Intron
Length: 11157
Transcript: NM_001032394
Length: 11157
Transcript: NM_001032394
Intron
Length: 8238
Transcript: NM_001032394
Length: 8238
Transcript: NM_001032394
Intron
Length: 2604
Transcript: NM_001032394
Length: 2604
Transcript: NM_001032394
Intron
Length: 895
Transcript: NM_001032394
Length: 895
Transcript: NM_001032394
Intron
Length: 3654
Transcript: NM_001032394
Length: 3654
Transcript: NM_001032394
Intron
Length: 2729
Transcript: NM_001032394
Length: 2729
Transcript: NM_001032394
Intron
Length: 1397
Transcript: NM_001032394
Length: 1397
Transcript: NM_001032394
Intron
Length: 561
Transcript: NM_001032394
Length: 561
Transcript: NM_001032394
Intron
Length: 971
Transcript: NM_001032394
Length: 971
Transcript: NM_001032394
Intron
Length: 1714
Transcript: NM_001032394
Length: 1714
Transcript: NM_001032394
Intron
Length: 2321
Transcript: NM_001032394
Length: 2321
Transcript: NM_001032394
Intron
Length: 1604
Transcript: NM_001032394
Length: 1604
Transcript: NM_001032394
Intron
Length: 1385
Transcript: NM_001032394
Length: 1385
Transcript: NM_001032394
Intron
Length: 3557
Transcript: NM_001032394
Length: 3557
Transcript: NM_001032394
Intron
Length: 699
Transcript: NM_001032394
Length: 699
Transcript: NM_001032394
Intron
Length: 1208
Transcript: NM_001032394
Length: 1208
Transcript: NM_001032394
Intron
Length: 2451
Transcript: NM_001032394
Length: 2451
Transcript: NM_001032394
Intron
Length: 17329
Transcript: NM_001032394
Length: 17329
Transcript: NM_001032394
Intron
Length: 676
Transcript: NM_001032394
Length: 676
Transcript: NM_001032394
Intron
Length: 2543
Transcript: NM_001032394
Length: 2543
Transcript: NM_001032394
Intron
Length: 2383
Transcript: NM_001032394
Length: 2383
Transcript: NM_001032394
Reaction
Expected peak: 148
15.6M
refseq_GPR126.F2
refseq_GPR126.R2
Expected peak: 148
15.6M
refseq_GPR126.F2
refseq_GPR126.R2
Exon
Length: 403
Transcript: NM_001032395
Length: 403
Transcript: NM_001032395
Exon
Length: 101
Transcript: NM_001032395
Length: 101
Transcript: NM_001032395
Exon
Length: 342
Transcript: NM_001032395
Length: 342
Transcript: NM_001032395
Exon
Length: 624
Transcript: NM_001032395
Length: 624
Transcript: NM_001032395
Exon
Length: 69
Transcript: NM_001032395
Length: 69
Transcript: NM_001032395
Exon
Length: 86
Transcript: NM_001032395
Length: 86
Transcript: NM_001032395
Exon
Length: 53
Transcript: NM_001032395
Length: 53
Transcript: NM_001032395
Exon
Length: 63
Transcript: NM_001032395
Length: 63
Transcript: NM_001032395
Exon
Length: 143
Transcript: NM_001032395
Length: 143
Transcript: NM_001032395
Exon
Length: 112
Transcript: NM_001032395
Length: 112
Transcript: NM_001032395
Exon
Length: 65
Transcript: NM_001032395
Length: 65
Transcript: NM_001032395
Exon
Length: 211
Transcript: NM_001032395
Length: 211
Transcript: NM_001032395
Exon
Length: 172
Transcript: NM_001032395
Length: 172
Transcript: NM_001032395
Exon
Length: 141
Transcript: NM_001032395
Length: 141
Transcript: NM_001032395
Exon
Length: 120
Transcript: NM_001032395
Length: 120
Transcript: NM_001032395
Exon
Length: 46
Transcript: NM_001032395
Length: 46
Transcript: NM_001032395
Exon
Length: 107
Transcript: NM_001032395
Length: 107
Transcript: NM_001032395
Exon
Length: 128
Transcript: NM_001032395
Length: 128
Transcript: NM_001032395
Exon
Length: 269
Transcript: NM_001032395
Length: 269
Transcript: NM_001032395
Exon
Length: 97
Transcript: NM_001032395
Length: 97
Transcript: NM_001032395
Exon
Length: 284
Transcript: NM_001032395
Length: 284
Transcript: NM_001032395
Exon
Length: 102
Transcript: NM_001032395
Length: 102
Transcript: NM_001032395
Exon
Length: 153
Transcript: NM_001032395
Length: 153
Transcript: NM_001032395
Exon
Length: 2912
Transcript: NM_001032395
Length: 2912
Transcript: NM_001032395
Intron
Length: 7212
Transcript: NM_001032395
Length: 7212
Transcript: NM_001032395
Intron
Length: 57924
Transcript: NM_001032395
Length: 57924
Transcript: NM_001032395
Intron
Length: 2259
Transcript: NM_001032395
Length: 2259
Transcript: NM_001032395
Intron
Length: 11157
Transcript: NM_001032395
Length: 11157
Transcript: NM_001032395
Intron
Length: 8238
Transcript: NM_001032395
Length: 8238
Transcript: NM_001032395
Intron
Length: 2604
Transcript: NM_001032395
Length: 2604
Transcript: NM_001032395
Intron
Length: 895
Transcript: NM_001032395
Length: 895
Transcript: NM_001032395
Intron
Length: 3654
Transcript: NM_001032395
Length: 3654
Transcript: NM_001032395
Intron
Length: 2729
Transcript: NM_001032395
Length: 2729
Transcript: NM_001032395
Intron
Length: 1397
Transcript: NM_001032395
Length: 1397
Transcript: NM_001032395
Intron
Length: 561
Transcript: NM_001032395
Length: 561
Transcript: NM_001032395
Intron
Length: 971
Transcript: NM_001032395
Length: 971
Transcript: NM_001032395
Intron
Length: 1714
Transcript: NM_001032395
Length: 1714
Transcript: NM_001032395
Intron
Length: 2321
Transcript: NM_001032395
Length: 2321
Transcript: NM_001032395
Intron
Length: 1604
Transcript: NM_001032395
Length: 1604
Transcript: NM_001032395
Intron
Length: 1385
Transcript: NM_001032395
Length: 1385
Transcript: NM_001032395
Intron
Length: 3557
Transcript: NM_001032395
Length: 3557
Transcript: NM_001032395
Intron
Length: 699
Transcript: NM_001032395
Length: 699
Transcript: NM_001032395
Intron
Length: 1208
Transcript: NM_001032395
Length: 1208
Transcript: NM_001032395
Intron
Length: 2451
Transcript: NM_001032395
Length: 2451
Transcript: NM_001032395
Intron
Length: 17329
Transcript: NM_001032395
Length: 17329
Transcript: NM_001032395
Intron
Length: 676
Transcript: NM_001032395
Length: 676
Transcript: NM_001032395
Intron
Length: 4972
Transcript: NM_001032395
Length: 4972
Transcript: NM_001032395
Reaction
Expected peak: 148
15.6M
refseq_GPR126.F2
refseq_GPR126.R2
Expected peak: 148
15.6M
refseq_GPR126.F2
refseq_GPR126.R2
Exon
Length: 403
Transcript: NM_020455
Length: 403
Transcript: NM_020455
Exon
Length: 101
Transcript: NM_020455
Length: 101
Transcript: NM_020455
Exon
Length: 342
Transcript: NM_020455
Length: 342
Transcript: NM_020455
Exon
Length: 624
Transcript: NM_020455
Length: 624
Transcript: NM_020455
Exon
Length: 69
Transcript: NM_020455
Length: 69
Transcript: NM_020455
Exon
Length: 84
Transcript: NM_020455
Length: 84
Transcript: NM_020455
Exon
Length: 86
Transcript: NM_020455
Length: 86
Transcript: NM_020455
Exon
Length: 53
Transcript: NM_020455
Length: 53
Transcript: NM_020455
Exon
Length: 63
Transcript: NM_020455
Length: 63
Transcript: NM_020455
Exon
Length: 143
Transcript: NM_020455
Length: 143
Transcript: NM_020455
Exon
Length: 112
Transcript: NM_020455
Length: 112
Transcript: NM_020455
Exon
Length: 65
Transcript: NM_020455
Length: 65
Transcript: NM_020455
Exon
Length: 211
Transcript: NM_020455
Length: 211
Transcript: NM_020455
Exon
Length: 172
Transcript: NM_020455
Length: 172
Transcript: NM_020455
Exon
Length: 141
Transcript: NM_020455
Length: 141
Transcript: NM_020455
Exon
Length: 120
Transcript: NM_020455
Length: 120
Transcript: NM_020455
Exon
Length: 46
Transcript: NM_020455
Length: 46
Transcript: NM_020455
Exon
Length: 107
Transcript: NM_020455
Length: 107
Transcript: NM_020455
Exon
Length: 128
Transcript: NM_020455
Length: 128
Transcript: NM_020455
Exon
Length: 269
Transcript: NM_020455
Length: 269
Transcript: NM_020455
Exon
Length: 97
Transcript: NM_020455
Length: 97
Transcript: NM_020455
Exon
Length: 284
Transcript: NM_020455
Length: 284
Transcript: NM_020455
Exon
Length: 102
Transcript: NM_020455
Length: 102
Transcript: NM_020455
Exon
Length: 153
Transcript: NM_020455
Length: 153
Transcript: NM_020455
Exon
Length: 46
Transcript: NM_020455
Length: 46
Transcript: NM_020455
Exon
Length: 2912
Transcript: NM_020455
Length: 2912
Transcript: NM_020455
Intron
Length: 7212
Transcript: NM_020455
Length: 7212
Transcript: NM_020455
Intron
Length: 57924
Transcript: NM_020455
Length: 57924
Transcript: NM_020455
Intron
Length: 2259
Transcript: NM_020455
Length: 2259
Transcript: NM_020455
Intron
Length: 11157
Transcript: NM_020455
Length: 11157
Transcript: NM_020455
Intron
Length: 1740
Transcript: NM_020455
Length: 1740
Transcript: NM_020455
Intron
Length: 6414
Transcript: NM_020455
Length: 6414
Transcript: NM_020455
Intron
Length: 2604
Transcript: NM_020455
Length: 2604
Transcript: NM_020455
Intron
Length: 895
Transcript: NM_020455
Length: 895
Transcript: NM_020455
Intron
Length: 3654
Transcript: NM_020455
Length: 3654
Transcript: NM_020455
Intron
Length: 2729
Transcript: NM_020455
Length: 2729
Transcript: NM_020455
Intron
Length: 1397
Transcript: NM_020455
Length: 1397
Transcript: NM_020455
Intron
Length: 561
Transcript: NM_020455
Length: 561
Transcript: NM_020455
Intron
Length: 971
Transcript: NM_020455
Length: 971
Transcript: NM_020455
Intron
Length: 1714
Transcript: NM_020455
Length: 1714
Transcript: NM_020455
Intron
Length: 2321
Transcript: NM_020455
Length: 2321
Transcript: NM_020455
Intron
Length: 1604
Transcript: NM_020455
Length: 1604
Transcript: NM_020455
Intron
Length: 1385
Transcript: NM_020455
Length: 1385
Transcript: NM_020455
Intron
Length: 3557
Transcript: NM_020455
Length: 3557
Transcript: NM_020455
Intron
Length: 699
Transcript: NM_020455
Length: 699
Transcript: NM_020455
Intron
Length: 1208
Transcript: NM_020455
Length: 1208
Transcript: NM_020455
Intron
Length: 2451
Transcript: NM_020455
Length: 2451
Transcript: NM_020455
Intron
Length: 17329
Transcript: NM_020455
Length: 17329
Transcript: NM_020455
Intron
Length: 676
Transcript: NM_020455
Length: 676
Transcript: NM_020455
Intron
Length: 2543
Transcript: NM_020455
Length: 2543
Transcript: NM_020455
Intron
Length: 2383
Transcript: NM_020455
Length: 2383
Transcript: NM_020455
Reaction
Expected peak: 232
47.8M
refseq_GPR126.F2
refseq_GPR126.R2
Expected peak: 232
47.8M
refseq_GPR126.F2
refseq_GPR126.R2
Exon
Length: 403
Transcript: NM_198569
Length: 403
Transcript: NM_198569
Exon
Length: 101
Transcript: NM_198569
Length: 101
Transcript: NM_198569
Exon
Length: 342
Transcript: NM_198569
Length: 342
Transcript: NM_198569
Exon
Length: 624
Transcript: NM_198569
Length: 624
Transcript: NM_198569
Exon
Length: 69
Transcript: NM_198569
Length: 69
Transcript: NM_198569
Exon
Length: 84
Transcript: NM_198569
Length: 84
Transcript: NM_198569
Exon
Length: 86
Transcript: NM_198569
Length: 86
Transcript: NM_198569
Exon
Length: 53
Transcript: NM_198569
Length: 53
Transcript: NM_198569
Exon
Length: 63
Transcript: NM_198569
Length: 63
Transcript: NM_198569
Exon
Length: 143
Transcript: NM_198569
Length: 143
Transcript: NM_198569
Exon
Length: 112
Transcript: NM_198569
Length: 112
Transcript: NM_198569
Exon
Length: 65
Transcript: NM_198569
Length: 65
Transcript: NM_198569
Exon
Length: 211
Transcript: NM_198569
Length: 211
Transcript: NM_198569
Exon
Length: 172
Transcript: NM_198569
Length: 172
Transcript: NM_198569
Exon
Length: 141
Transcript: NM_198569
Length: 141
Transcript: NM_198569
Exon
Length: 120
Transcript: NM_198569
Length: 120
Transcript: NM_198569
Exon
Length: 46
Transcript: NM_198569
Length: 46
Transcript: NM_198569
Exon
Length: 107
Transcript: NM_198569
Length: 107
Transcript: NM_198569
Exon
Length: 128
Transcript: NM_198569
Length: 128
Transcript: NM_198569
Exon
Length: 269
Transcript: NM_198569
Length: 269
Transcript: NM_198569
Exon
Length: 97
Transcript: NM_198569
Length: 97
Transcript: NM_198569
Exon
Length: 284
Transcript: NM_198569
Length: 284
Transcript: NM_198569
Exon
Length: 102
Transcript: NM_198569
Length: 102
Transcript: NM_198569
Exon
Length: 153
Transcript: NM_198569
Length: 153
Transcript: NM_198569
Exon
Length: 2912
Transcript: NM_198569
Length: 2912
Transcript: NM_198569
Intron
Length: 7212
Transcript: NM_198569
Length: 7212
Transcript: NM_198569
Intron
Length: 57924
Transcript: NM_198569
Length: 57924
Transcript: NM_198569
Intron
Length: 2259
Transcript: NM_198569
Length: 2259
Transcript: NM_198569
Intron
Length: 11157
Transcript: NM_198569
Length: 11157
Transcript: NM_198569
Intron
Length: 1740
Transcript: NM_198569
Length: 1740
Transcript: NM_198569
Intron
Length: 6414
Transcript: NM_198569
Length: 6414
Transcript: NM_198569
Intron
Length: 2604
Transcript: NM_198569
Length: 2604
Transcript: NM_198569
Intron
Length: 895
Transcript: NM_198569
Length: 895
Transcript: NM_198569
Intron
Length: 3654
Transcript: NM_198569
Length: 3654
Transcript: NM_198569
Intron
Length: 2729
Transcript: NM_198569
Length: 2729
Transcript: NM_198569
Intron
Length: 1397
Transcript: NM_198569
Length: 1397
Transcript: NM_198569
Intron
Length: 561
Transcript: NM_198569
Length: 561
Transcript: NM_198569
Intron
Length: 971
Transcript: NM_198569
Length: 971
Transcript: NM_198569
Intron
Length: 1714
Transcript: NM_198569
Length: 1714
Transcript: NM_198569
Intron
Length: 2321
Transcript: NM_198569
Length: 2321
Transcript: NM_198569
Intron
Length: 1604
Transcript: NM_198569
Length: 1604
Transcript: NM_198569
Intron
Length: 1385
Transcript: NM_198569
Length: 1385
Transcript: NM_198569
Intron
Length: 3557
Transcript: NM_198569
Length: 3557
Transcript: NM_198569
Intron
Length: 699
Transcript: NM_198569
Length: 699
Transcript: NM_198569
Intron
Length: 1208
Transcript: NM_198569
Length: 1208
Transcript: NM_198569
Intron
Length: 2451
Transcript: NM_198569
Length: 2451
Transcript: NM_198569
Intron
Length: 17329
Transcript: NM_198569
Length: 17329
Transcript: NM_198569
Intron
Length: 676
Transcript: NM_198569
Length: 676
Transcript: NM_198569
Intron
Length: 4972
Transcript: NM_198569
Length: 4972
Transcript: NM_198569
Reaction
Expected peak: 232
47.8M
refseq_GPR126.F2
refseq_GPR126.R2
Expected peak: 232
47.8M
refseq_GPR126.F2
refseq_GPR126.R2
refseq_GPR126.R2
CGACATAAACCGTGTAGTTCCA
CGACATAAACCGTGTAGTTCCA
refseq_GPR126.F2
CTGGGGACCCTCTGTCAAG
CTGGGGACCCTCTGTCAAG