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Supplementary data
RBFOX2 enforces the mesenchymal splicing signature in normal and cancer tissues
7. 26 switch-like targets from epithelium and mesenchyme (fetal colon) in RBFOX2, MBNL1, PTBP and ESRP knockdowns
Transcript map
: ACOT9 Control (MDA-MB-231)
Exon
Length: 166
Transcript: NM_001033583
Length: 166
Transcript: NM_001033583
Exon
Length: 98
Transcript: NM_001033583
Length: 98
Transcript: NM_001033583
Exon
Length: 46
Transcript: NM_001033583
Length: 46
Transcript: NM_001033583
Exon
Length: 171
Transcript: NM_001033583
Length: 171
Transcript: NM_001033583
Exon
Length: 38
Transcript: NM_001033583
Length: 38
Transcript: NM_001033583
Exon
Length: 84
Transcript: NM_001033583
Length: 84
Transcript: NM_001033583
Exon
Length: 104
Transcript: NM_001033583
Length: 104
Transcript: NM_001033583
Exon
Length: 74
Transcript: NM_001033583
Length: 74
Transcript: NM_001033583
Exon
Length: 68
Transcript: NM_001033583
Length: 68
Transcript: NM_001033583
Exon
Length: 112
Transcript: NM_001033583
Length: 112
Transcript: NM_001033583
Exon
Length: 91
Transcript: NM_001033583
Length: 91
Transcript: NM_001033583
Exon
Length: 86
Transcript: NM_001033583
Length: 86
Transcript: NM_001033583
Exon
Length: 88
Transcript: NM_001033583
Length: 88
Transcript: NM_001033583
Exon
Length: 151
Transcript: NM_001033583
Length: 151
Transcript: NM_001033583
Exon
Length: 323
Transcript: NM_001033583
Length: 323
Transcript: NM_001033583
Intron
Length: 7108
Transcript: NM_001033583
Length: 7108
Transcript: NM_001033583
Intron
Length: 2701
Transcript: NM_001033583
Length: 2701
Transcript: NM_001033583
Intron
Length: 2185
Transcript: NM_001033583
Length: 2185
Transcript: NM_001033583
Intron
Length: 251
Transcript: NM_001033583
Length: 251
Transcript: NM_001033583
Intron
Length: 7773
Transcript: NM_001033583
Length: 7773
Transcript: NM_001033583
Intron
Length: 685
Transcript: NM_001033583
Length: 685
Transcript: NM_001033583
Intron
Length: 8672
Transcript: NM_001033583
Length: 8672
Transcript: NM_001033583
Intron
Length: 5190
Transcript: NM_001033583
Length: 5190
Transcript: NM_001033583
Intron
Length: 1137
Transcript: NM_001033583
Length: 1137
Transcript: NM_001033583
Intron
Length: 769
Transcript: NM_001033583
Length: 769
Transcript: NM_001033583
Intron
Length: 173
Transcript: NM_001033583
Length: 173
Transcript: NM_001033583
Intron
Length: 428
Transcript: NM_001033583
Length: 428
Transcript: NM_001033583
Intron
Length: 148
Transcript: NM_001033583
Length: 148
Transcript: NM_001033583
Intron
Length: 711
Transcript: NM_001033583
Length: 711
Transcript: NM_001033583
Reaction
Expected peak: 103
13.1M
refseq_ACOT9.F2
refseq_ACOT9.R2
Expected peak: 103
13.1M
refseq_ACOT9.F2
refseq_ACOT9.R2
Exon
Length: 166
Transcript: NM_001037171
Length: 166
Transcript: NM_001037171
Exon
Length: 98
Transcript: NM_001037171
Length: 98
Transcript: NM_001037171
Exon
Length: 27
Transcript: NM_001037171
Length: 27
Transcript: NM_001037171
Exon
Length: 46
Transcript: NM_001037171
Length: 46
Transcript: NM_001037171
Exon
Length: 171
Transcript: NM_001037171
Length: 171
Transcript: NM_001037171
Exon
Length: 38
Transcript: NM_001037171
Length: 38
Transcript: NM_001037171
Exon
Length: 84
Transcript: NM_001037171
Length: 84
Transcript: NM_001037171
Exon
Length: 104
Transcript: NM_001037171
Length: 104
Transcript: NM_001037171
Exon
Length: 74
Transcript: NM_001037171
Length: 74
Transcript: NM_001037171
Exon
Length: 68
Transcript: NM_001037171
Length: 68
Transcript: NM_001037171
Exon
Length: 112
Transcript: NM_001037171
Length: 112
Transcript: NM_001037171
Exon
Length: 91
Transcript: NM_001037171
Length: 91
Transcript: NM_001037171
Exon
Length: 86
Transcript: NM_001037171
Length: 86
Transcript: NM_001037171
Exon
Length: 88
Transcript: NM_001037171
Length: 88
Transcript: NM_001037171
Exon
Length: 151
Transcript: NM_001037171
Length: 151
Transcript: NM_001037171
Exon
Length: 323
Transcript: NM_001037171
Length: 323
Transcript: NM_001037171
Intron
Length: 7108
Transcript: NM_001037171
Length: 7108
Transcript: NM_001037171
Intron
Length: 1551
Transcript: NM_001037171
Length: 1551
Transcript: NM_001037171
Intron
Length: 1123
Transcript: NM_001037171
Length: 1123
Transcript: NM_001037171
Intron
Length: 2185
Transcript: NM_001037171
Length: 2185
Transcript: NM_001037171
Intron
Length: 251
Transcript: NM_001037171
Length: 251
Transcript: NM_001037171
Intron
Length: 7773
Transcript: NM_001037171
Length: 7773
Transcript: NM_001037171
Intron
Length: 685
Transcript: NM_001037171
Length: 685
Transcript: NM_001037171
Intron
Length: 8672
Transcript: NM_001037171
Length: 8672
Transcript: NM_001037171
Intron
Length: 5190
Transcript: NM_001037171
Length: 5190
Transcript: NM_001037171
Intron
Length: 1137
Transcript: NM_001037171
Length: 1137
Transcript: NM_001037171
Intron
Length: 769
Transcript: NM_001037171
Length: 769
Transcript: NM_001037171
Intron
Length: 173
Transcript: NM_001037171
Length: 173
Transcript: NM_001037171
Intron
Length: 428
Transcript: NM_001037171
Length: 428
Transcript: NM_001037171
Intron
Length: 148
Transcript: NM_001037171
Length: 148
Transcript: NM_001037171
Intron
Length: 711
Transcript: NM_001037171
Length: 711
Transcript: NM_001037171
Reaction
Expected peak: 130
121.5M
refseq_ACOT9.F2
refseq_ACOT9.R2
Expected peak: 130
121.5M
refseq_ACOT9.F2
refseq_ACOT9.R2
refseq_ACOT9.F2
CAAAGGGCAGCTTACTCCTG
CAAAGGGCAGCTTACTCCTG
refseq_ACOT9.R2
CTCCCGCAACTTATCTCGAA
CTCCCGCAACTTATCTCGAA