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Supplementary data
RBFOX2 enforces the mesenchymal splicing signature in normal and cancer tissues
7. 26 switch-like targets from epithelium and mesenchyme (fetal colon) in RBFOX2, MBNL1, PTBP and ESRP knockdowns
Transcript map
: GRHL1 Control (MDA-MB-231)
Exon
Length: 161
Transcript: NM_014552
Length: 161
Transcript: NM_014552
Exon
Length: 187
Transcript: NM_014552
Length: 187
Transcript: NM_014552
Exon
Length: 71
Transcript: NM_014552
Length: 71
Transcript: NM_014552
Exon
Length: 391
Transcript: NM_014552
Length: 391
Transcript: NM_014552
Exon
Length: 77
Transcript: NM_014552
Length: 77
Transcript: NM_014552
Exon
Length: 157
Transcript: NM_014552
Length: 157
Transcript: NM_014552
Exon
Length: 112
Transcript: NM_014552
Length: 112
Transcript: NM_014552
Exon
Length: 95
Transcript: NM_014552
Length: 95
Transcript: NM_014552
Exon
Length: 159
Transcript: NM_014552
Length: 159
Transcript: NM_014552
Exon
Length: 52
Transcript: NM_014552
Length: 52
Transcript: NM_014552
Exon
Length: 140
Transcript: NM_014552
Length: 140
Transcript: NM_014552
Exon
Length: 38
Transcript: NM_014552
Length: 38
Transcript: NM_014552
Exon
Length: 92
Transcript: NM_014552
Length: 92
Transcript: NM_014552
Exon
Length: 86
Transcript: NM_014552
Length: 86
Transcript: NM_014552
Exon
Length: 65
Transcript: NM_014552
Length: 65
Transcript: NM_014552
Exon
Length: 1685
Transcript: NM_014552
Length: 1685
Transcript: NM_014552
Intron
Length: 3061
Transcript: NM_014552
Length: 3061
Transcript: NM_014552
Intron
Length: 3684
Transcript: NM_014552
Length: 3684
Transcript: NM_014552
Intron
Length: 2189
Transcript: NM_014552
Length: 2189
Transcript: NM_014552
Intron
Length: 1018
Transcript: NM_014552
Length: 1018
Transcript: NM_014552
Intron
Length: 1354
Transcript: NM_014552
Length: 1354
Transcript: NM_014552
Intron
Length: 192
Transcript: NM_014552
Length: 192
Transcript: NM_014552
Intron
Length: 940
Transcript: NM_014552
Length: 940
Transcript: NM_014552
Intron
Length: 20741
Transcript: NM_014552
Length: 20741
Transcript: NM_014552
Intron
Length: 4413
Transcript: NM_014552
Length: 4413
Transcript: NM_014552
Intron
Length: 1259
Transcript: NM_014552
Length: 1259
Transcript: NM_014552
Intron
Length: 1060
Transcript: NM_014552
Length: 1060
Transcript: NM_014552
Intron
Length: 2634
Transcript: NM_014552
Length: 2634
Transcript: NM_014552
Intron
Length: 345
Transcript: NM_014552
Length: 345
Transcript: NM_014552
Intron
Length: 2563
Transcript: NM_014552
Length: 2563
Transcript: NM_014552
Intron
Length: 1563
Transcript: NM_014552
Length: 1563
Transcript: NM_014552
Reaction
Expected peak: 288
30.9M
refseq_GRHL1.F1
refseq_GRHL1.R1
Expected peak: 288
30.9M
refseq_GRHL1.F1
refseq_GRHL1.R1
Exon
Length: 272
Transcript: NM_198182
Length: 272
Transcript: NM_198182
Exon
Length: 157
Transcript: NM_198182
Length: 157
Transcript: NM_198182
Exon
Length: 112
Transcript: NM_198182
Length: 112
Transcript: NM_198182
Exon
Length: 95
Transcript: NM_198182
Length: 95
Transcript: NM_198182
Exon
Length: 159
Transcript: NM_198182
Length: 159
Transcript: NM_198182
Exon
Length: 52
Transcript: NM_198182
Length: 52
Transcript: NM_198182
Exon
Length: 140
Transcript: NM_198182
Length: 140
Transcript: NM_198182
Exon
Length: 38
Transcript: NM_198182
Length: 38
Transcript: NM_198182
Exon
Length: 92
Transcript: NM_198182
Length: 92
Transcript: NM_198182
Exon
Length: 86
Transcript: NM_198182
Length: 86
Transcript: NM_198182
Exon
Length: 65
Transcript: NM_198182
Length: 65
Transcript: NM_198182
Exon
Length: 1685
Transcript: NM_198182
Length: 1685
Transcript: NM_198182
Intron
Length: 2449
Transcript: NM_198182
Length: 2449
Transcript: NM_198182
Intron
Length: 192
Transcript: NM_198182
Length: 192
Transcript: NM_198182
Intron
Length: 940
Transcript: NM_198182
Length: 940
Transcript: NM_198182
Intron
Length: 20741
Transcript: NM_198182
Length: 20741
Transcript: NM_198182
Intron
Length: 4413
Transcript: NM_198182
Length: 4413
Transcript: NM_198182
Intron
Length: 1259
Transcript: NM_198182
Length: 1259
Transcript: NM_198182
Intron
Length: 1060
Transcript: NM_198182
Length: 1060
Transcript: NM_198182
Intron
Length: 2634
Transcript: NM_198182
Length: 2634
Transcript: NM_198182
Intron
Length: 345
Transcript: NM_198182
Length: 345
Transcript: NM_198182
Intron
Length: 2563
Transcript: NM_198182
Length: 2563
Transcript: NM_198182
Intron
Length: 1563
Transcript: NM_198182
Length: 1563
Transcript: NM_198182
Reaction
Expected peak: 211
6.9M
refseq_GRHL1.F1
refseq_GRHL1.R1
Expected peak: 211
6.9M
refseq_GRHL1.F1
refseq_GRHL1.R1
refseq_GRHL1.F1
AATGCTCAAAGGCGAACTCC
AATGCTCAAAGGCGAACTCC
refseq_GRHL1.R1
GCTGATGGGATGATGGATTC
GCTGATGGGATGATGGATTC