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Supplementary data
RBFOX2 enforces the mesenchymal splicing signature in normal and cancer tissues
6. Best 48 RBFOX2 targets / epithelium and mesenchyme (fetal colon)
Transcript map
: FGFR1OP epithelium
Exon
Length: 187
Transcript: NM_007045
Length: 187
Transcript: NM_007045
Exon
Length: 54
Transcript: NM_007045
Length: 54
Transcript: NM_007045
Exon
Length: 55
Transcript: NM_007045
Length: 55
Transcript: NM_007045
Exon
Length: 89
Transcript: NM_007045
Length: 89
Transcript: NM_007045
Exon
Length: 138
Transcript: NM_007045
Length: 138
Transcript: NM_007045
Exon
Length: 81
Transcript: NM_007045
Length: 81
Transcript: NM_007045
Exon
Length: 60
Transcript: NM_007045
Length: 60
Transcript: NM_007045
Exon
Length: 227
Transcript: NM_007045
Length: 227
Transcript: NM_007045
Exon
Length: 113
Transcript: NM_007045
Length: 113
Transcript: NM_007045
Exon
Length: 69
Transcript: NM_007045
Length: 69
Transcript: NM_007045
Exon
Length: 40
Transcript: NM_007045
Length: 40
Transcript: NM_007045
Exon
Length: 97
Transcript: NM_007045
Length: 97
Transcript: NM_007045
Exon
Length: 675
Transcript: NM_007045
Length: 675
Transcript: NM_007045
Intron
Length: 545
Transcript: NM_007045
Length: 545
Transcript: NM_007045
Intron
Length: 3079
Transcript: NM_007045
Length: 3079
Transcript: NM_007045
Intron
Length: 475
Transcript: NM_007045
Length: 475
Transcript: NM_007045
Intron
Length: 452
Transcript: NM_007045
Length: 452
Transcript: NM_007045
Intron
Length: 6411
Transcript: NM_007045
Length: 6411
Transcript: NM_007045
Intron
Length: 2614
Transcript: NM_007045
Length: 2614
Transcript: NM_007045
Intron
Length: 8841
Transcript: NM_007045
Length: 8841
Transcript: NM_007045
Intron
Length: 2146
Transcript: NM_007045
Length: 2146
Transcript: NM_007045
Intron
Length: 1652
Transcript: NM_007045
Length: 1652
Transcript: NM_007045
Intron
Length: 5987
Transcript: NM_007045
Length: 5987
Transcript: NM_007045
Intron
Length: 1232
Transcript: NM_007045
Length: 1232
Transcript: NM_007045
Intron
Length: 5932
Transcript: NM_007045
Length: 5932
Transcript: NM_007045
Reaction
Expected peak: 254
2.8M
refseq_FGFR1OP.F1
refseq_FGFR1OP.R1
Expected peak: 254
2.8M
refseq_FGFR1OP.F1
refseq_FGFR1OP.R1
Exon
Length: 187
Transcript: NM_194429
Length: 187
Transcript: NM_194429
Exon
Length: 54
Transcript: NM_194429
Length: 54
Transcript: NM_194429
Exon
Length: 55
Transcript: NM_194429
Length: 55
Transcript: NM_194429
Exon
Length: 89
Transcript: NM_194429
Length: 89
Transcript: NM_194429
Exon
Length: 138
Transcript: NM_194429
Length: 138
Transcript: NM_194429
Exon
Length: 81
Transcript: NM_194429
Length: 81
Transcript: NM_194429
Exon
Length: 227
Transcript: NM_194429
Length: 227
Transcript: NM_194429
Exon
Length: 113
Transcript: NM_194429
Length: 113
Transcript: NM_194429
Exon
Length: 69
Transcript: NM_194429
Length: 69
Transcript: NM_194429
Exon
Length: 40
Transcript: NM_194429
Length: 40
Transcript: NM_194429
Exon
Length: 97
Transcript: NM_194429
Length: 97
Transcript: NM_194429
Exon
Length: 675
Transcript: NM_194429
Length: 675
Transcript: NM_194429
Intron
Length: 545
Transcript: NM_194429
Length: 545
Transcript: NM_194429
Intron
Length: 3079
Transcript: NM_194429
Length: 3079
Transcript: NM_194429
Intron
Length: 475
Transcript: NM_194429
Length: 475
Transcript: NM_194429
Intron
Length: 452
Transcript: NM_194429
Length: 452
Transcript: NM_194429
Intron
Length: 6411
Transcript: NM_194429
Length: 6411
Transcript: NM_194429
Intron
Length: 11515
Transcript: NM_194429
Length: 11515
Transcript: NM_194429
Intron
Length: 2146
Transcript: NM_194429
Length: 2146
Transcript: NM_194429
Intron
Length: 1652
Transcript: NM_194429
Length: 1652
Transcript: NM_194429
Intron
Length: 5987
Transcript: NM_194429
Length: 5987
Transcript: NM_194429
Intron
Length: 1232
Transcript: NM_194429
Length: 1232
Transcript: NM_194429
Intron
Length: 5932
Transcript: NM_194429
Length: 5932
Transcript: NM_194429
Reaction
Expected peak: 194
107.1M
refseq_FGFR1OP.F1
refseq_FGFR1OP.R1
Expected peak: 194
107.1M
refseq_FGFR1OP.F1
refseq_FGFR1OP.R1
refseq_FGFR1OP.R1
GACACTTGTATCACTCTGATTGGC
GACACTTGTATCACTCTGATTGGC
refseq_FGFR1OP.F1
CTGTGGGTGGACCCTTATTATTAG
CTGTGGGTGGACCCTTATTATTAG