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PRPF mutations are associated with generalized defects in spliceosome formation and pre-mRNA splicing in patients with retinitis pigmentosa
PRPF8 knockdown in human cell lines Tanackovic et al.
Transcript map
: BCAS1 siPRPF8 global_2|MCF7 (2007-07-13 96hrs)
- BCAS1.F9 / BCAS1.R4 (CM014229 M2) : Curve | Curve set
- BCAS1.F9 / BCAS1.R4 (CM014229 M2) : Curve | Curve set
- BCAS1.F9 / BCAS1.R4 (CM014229 N1) : Curve | Curve set
- BCAS1.F9 / BCAS1.R4 (CM014229 N1) : Curve | Curve set
- BCAS1.F9 / BCAS1.R4 (CM014229 N2) : Curve | Curve set
- BCAS1.F9 / BCAS1.R4 (CM014229 N2) : Curve | Curve set
Exon
Length: 162
Transcript: BCAS1.aAug05
Length: 162
Transcript: BCAS1.aAug05
Exon
Length: 77
Transcript: BCAS1.aAug05
Length: 77
Transcript: BCAS1.aAug05
Exon
Length: 70
Transcript: BCAS1.aAug05
Length: 70
Transcript: BCAS1.aAug05
Exon
Length: 581
Transcript: BCAS1.aAug05
Length: 581
Transcript: BCAS1.aAug05
Exon
Length: 159
Transcript: BCAS1.aAug05
Length: 159
Transcript: BCAS1.aAug05
Exon
Length: 45
Transcript: BCAS1.aAug05
Length: 45
Transcript: BCAS1.aAug05
Exon
Length: 213
Transcript: BCAS1.aAug05
Length: 213
Transcript: BCAS1.aAug05
Exon
Length: 42
Transcript: BCAS1.aAug05
Length: 42
Transcript: BCAS1.aAug05
Exon
Length: 168
Transcript: BCAS1.aAug05
Length: 168
Transcript: BCAS1.aAug05
Exon
Length: 66
Transcript: BCAS1.aAug05
Length: 66
Transcript: BCAS1.aAug05
Exon
Length: 264
Transcript: BCAS1.aAug05
Length: 264
Transcript: BCAS1.aAug05
Exon
Length: 1916
Transcript: BCAS1.aAug05
Length: 1916
Transcript: BCAS1.aAug05
Intron
Length: 11709
Transcript: BCAS1.aAug05
Length: 11709
Transcript: BCAS1.aAug05
Intron
Length: 492
Transcript: BCAS1.aAug05
Length: 492
Transcript: BCAS1.aAug05
Intron
Length: 29112
Transcript: BCAS1.aAug05
Length: 29112
Transcript: BCAS1.aAug05
Intron
Length: 32341
Transcript: BCAS1.aAug05
Length: 32341
Transcript: BCAS1.aAug05
Intron
Length: 835
Transcript: BCAS1.aAug05
Length: 835
Transcript: BCAS1.aAug05
Intron
Length: 9512
Transcript: BCAS1.aAug05
Length: 9512
Transcript: BCAS1.aAug05
Intron
Length: 9856
Transcript: BCAS1.aAug05
Length: 9856
Transcript: BCAS1.aAug05
Intron
Length: 8315
Transcript: BCAS1.aAug05
Length: 8315
Transcript: BCAS1.aAug05
Intron
Length: 9408
Transcript: BCAS1.aAug05
Length: 9408
Transcript: BCAS1.aAug05
Intron
Length: 3736
Transcript: BCAS1.aAug05
Length: 3736
Transcript: BCAS1.aAug05
Intron
Length: 8435
Transcript: BCAS1.aAug05
Length: 8435
Transcript: BCAS1.aAug05
Reaction
Expected peak: 292
9.4M
BCAS1.F9
BCAS1.R4
Expected peak: 292
9.4M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 292
9.4M
BCAS1.F9
BCAS1.R4
Expected peak: 292
9.4M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 292
9.4M
BCAS1.F9
BCAS1.R4
Expected peak: 292
9.4M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 292
9.4M
BCAS1.F9
BCAS1.R4
Expected peak: 292
9.4M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 292
7.8M
BCAS1.F9
BCAS1.R4
Expected peak: 292
7.8M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 292
7.8M
BCAS1.F9
BCAS1.R4
Expected peak: 292
7.8M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 292
7.8M
BCAS1.F9
BCAS1.R4
Expected peak: 292
7.8M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 292
7.8M
BCAS1.F9
BCAS1.R4
Expected peak: 292
7.8M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 292
14.6M
BCAS1.F9
BCAS1.R4
Expected peak: 292
14.6M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 292
14.6M
BCAS1.F9
BCAS1.R4
Expected peak: 292
14.6M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 292
14.6M
BCAS1.F9
BCAS1.R4
Expected peak: 292
14.6M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 292
14.6M
BCAS1.F9
BCAS1.R4
Expected peak: 292
14.6M
BCAS1.F9
BCAS1.R4
Exon
Length: 113
Transcript: BCAS1.bAug05
Length: 113
Transcript: BCAS1.bAug05
Exon
Length: 77
Transcript: BCAS1.bAug05
Length: 77
Transcript: BCAS1.bAug05
Exon
Length: 70
Transcript: BCAS1.bAug05
Length: 70
Transcript: BCAS1.bAug05
Exon
Length: 581
Transcript: BCAS1.bAug05
Length: 581
Transcript: BCAS1.bAug05
Exon
Length: 159
Transcript: BCAS1.bAug05
Length: 159
Transcript: BCAS1.bAug05
Exon
Length: 45
Transcript: BCAS1.bAug05
Length: 45
Transcript: BCAS1.bAug05
Exon
Length: 213
Transcript: BCAS1.bAug05
Length: 213
Transcript: BCAS1.bAug05
Exon
Length: 42
Transcript: BCAS1.bAug05
Length: 42
Transcript: BCAS1.bAug05
Exon
Length: 264
Transcript: BCAS1.bAug05
Length: 264
Transcript: BCAS1.bAug05
Exon
Length: 1019
Transcript: BCAS1.bAug05
Length: 1019
Transcript: BCAS1.bAug05
Intron
Length: 11709
Transcript: BCAS1.bAug05
Length: 11709
Transcript: BCAS1.bAug05
Intron
Length: 492
Transcript: BCAS1.bAug05
Length: 492
Transcript: BCAS1.bAug05
Intron
Length: 29112
Transcript: BCAS1.bAug05
Length: 29112
Transcript: BCAS1.bAug05
Intron
Length: 32341
Transcript: BCAS1.bAug05
Length: 32341
Transcript: BCAS1.bAug05
Intron
Length: 835
Transcript: BCAS1.bAug05
Length: 835
Transcript: BCAS1.bAug05
Intron
Length: 9512
Transcript: BCAS1.bAug05
Length: 9512
Transcript: BCAS1.bAug05
Intron
Length: 9856
Transcript: BCAS1.bAug05
Length: 9856
Transcript: BCAS1.bAug05
Intron
Length: 21693
Transcript: BCAS1.bAug05
Length: 21693
Transcript: BCAS1.bAug05
Intron
Length: 8435
Transcript: BCAS1.bAug05
Length: 8435
Transcript: BCAS1.bAug05
Exon
Length: 301
Transcript: BCAS1.cAug05
Length: 301
Transcript: BCAS1.cAug05
Exon
Length: 159
Transcript: BCAS1.cAug05
Length: 159
Transcript: BCAS1.cAug05
Exon
Length: 45
Transcript: BCAS1.cAug05
Length: 45
Transcript: BCAS1.cAug05
Exon
Length: 135
Transcript: BCAS1.cAug05
Length: 135
Transcript: BCAS1.cAug05
Exon
Length: 213
Transcript: BCAS1.cAug05
Length: 213
Transcript: BCAS1.cAug05
Exon
Length: 168
Transcript: BCAS1.cAug05
Length: 168
Transcript: BCAS1.cAug05
Exon
Length: 264
Transcript: BCAS1.cAug05
Length: 264
Transcript: BCAS1.cAug05
Exon
Length: 71
Transcript: BCAS1.cAug05
Length: 71
Transcript: BCAS1.cAug05
Exon
Length: 4749
Transcript: BCAS1.cAug05
Length: 4749
Transcript: BCAS1.cAug05
Intron
Length: 32341
Transcript: BCAS1.cAug05
Length: 32341
Transcript: BCAS1.cAug05
Intron
Length: 835
Transcript: BCAS1.cAug05
Length: 835
Transcript: BCAS1.cAug05
Intron
Length: 2365
Transcript: BCAS1.cAug05
Length: 2365
Transcript: BCAS1.cAug05
Intron
Length: 7012
Transcript: BCAS1.cAug05
Length: 7012
Transcript: BCAS1.cAug05
Intron
Length: 18213
Transcript: BCAS1.cAug05
Length: 18213
Transcript: BCAS1.cAug05
Intron
Length: 13210
Transcript: BCAS1.cAug05
Length: 13210
Transcript: BCAS1.cAug05
Intron
Length: 8435
Transcript: BCAS1.cAug05
Length: 8435
Transcript: BCAS1.cAug05
Intron
Length: 3401
Transcript: BCAS1.cAug05
Length: 3401
Transcript: BCAS1.cAug05
Reaction
Expected peak: 226
1.1M
BCAS1.F9
BCAS1.R4
Expected peak: 226
1.1M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 226
1.1M
BCAS1.F9
BCAS1.R4
Expected peak: 226
1.1M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 226
1.1M
BCAS1.F9
BCAS1.R4
Expected peak: 226
1.1M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 226
1.1M
BCAS1.F9
BCAS1.R4
Expected peak: 226
1.1M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 226
0.8M
BCAS1.F9
BCAS1.R4
Expected peak: 226
0.8M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 226
0.8M
BCAS1.F9
BCAS1.R4
Expected peak: 226
0.8M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 226
0.8M
BCAS1.F9
BCAS1.R4
Expected peak: 226
0.8M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 226
0.8M
BCAS1.F9
BCAS1.R4
Expected peak: 226
0.8M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 226
0.9M
BCAS1.F9
BCAS1.R4
Expected peak: 226
0.9M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 226
0.9M
BCAS1.F9
BCAS1.R4
Expected peak: 226
0.9M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 226
0.9M
BCAS1.F9
BCAS1.R4
Expected peak: 226
0.9M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 226
0.9M
BCAS1.F9
BCAS1.R4
Expected peak: 226
0.9M
BCAS1.F9
BCAS1.R4
Exon
Length: 240
Transcript: BCAS1.dAug05
Length: 240
Transcript: BCAS1.dAug05
Exon
Length: 159
Transcript: BCAS1.dAug05
Length: 159
Transcript: BCAS1.dAug05
Exon
Length: 45
Transcript: BCAS1.dAug05
Length: 45
Transcript: BCAS1.dAug05
Exon
Length: 135
Transcript: BCAS1.dAug05
Length: 135
Transcript: BCAS1.dAug05
Exon
Length: 213
Transcript: BCAS1.dAug05
Length: 213
Transcript: BCAS1.dAug05
Exon
Length: 59
Transcript: BCAS1.dAug05
Length: 59
Transcript: BCAS1.dAug05
Intron
Length: 32341
Transcript: BCAS1.dAug05
Length: 32341
Transcript: BCAS1.dAug05
Intron
Length: 835
Transcript: BCAS1.dAug05
Length: 835
Transcript: BCAS1.dAug05
Intron
Length: 2365
Transcript: BCAS1.dAug05
Length: 2365
Transcript: BCAS1.dAug05
Intron
Length: 7012
Transcript: BCAS1.dAug05
Length: 7012
Transcript: BCAS1.dAug05
Intron
Length: 31591
Transcript: BCAS1.dAug05
Length: 31591
Transcript: BCAS1.dAug05
Exon
Length: 38
Transcript: BCAS1.eAug05
Length: 38
Transcript: BCAS1.eAug05
Exon
Length: 45
Transcript: BCAS1.eAug05
Length: 45
Transcript: BCAS1.eAug05
Exon
Length: 213
Transcript: BCAS1.eAug05
Length: 213
Transcript: BCAS1.eAug05
Exon
Length: 42
Transcript: BCAS1.eAug05
Length: 42
Transcript: BCAS1.eAug05
Exon
Length: 66
Transcript: BCAS1.eAug05
Length: 66
Transcript: BCAS1.eAug05
Exon
Length: 264
Transcript: BCAS1.eAug05
Length: 264
Transcript: BCAS1.eAug05
Exon
Length: 148
Transcript: BCAS1.eAug05
Length: 148
Transcript: BCAS1.eAug05
Intron
Length: 835
Transcript: BCAS1.eAug05
Length: 835
Transcript: BCAS1.eAug05
Intron
Length: 9512
Transcript: BCAS1.eAug05
Length: 9512
Transcript: BCAS1.eAug05
Intron
Length: 9856
Transcript: BCAS1.eAug05
Length: 9856
Transcript: BCAS1.eAug05
Intron
Length: 17891
Transcript: BCAS1.eAug05
Length: 17891
Transcript: BCAS1.eAug05
Intron
Length: 3736
Transcript: BCAS1.eAug05
Length: 3736
Transcript: BCAS1.eAug05
Intron
Length: 8435
Transcript: BCAS1.eAug05
Length: 8435
Transcript: BCAS1.eAug05
Exon
Length: 146
Transcript: BCAS1.fAug05
Length: 146
Transcript: BCAS1.fAug05
Exon
Length: 66
Transcript: BCAS1.fAug05
Length: 66
Transcript: BCAS1.fAug05
Exon
Length: 264
Transcript: BCAS1.fAug05
Length: 264
Transcript: BCAS1.fAug05
Exon
Length: 71
Transcript: BCAS1.fAug05
Length: 71
Transcript: BCAS1.fAug05
Exon
Length: 208
Transcript: BCAS1.fAug05
Length: 208
Transcript: BCAS1.fAug05
Intron
Length: 9408
Transcript: BCAS1.fAug05
Length: 9408
Transcript: BCAS1.fAug05
Intron
Length: 3736
Transcript: BCAS1.fAug05
Length: 3736
Transcript: BCAS1.fAug05
Intron
Length: 8435
Transcript: BCAS1.fAug05
Length: 8435
Transcript: BCAS1.fAug05
Intron
Length: 3401
Transcript: BCAS1.fAug05
Length: 3401
Transcript: BCAS1.fAug05
Reaction
Expected peak: 292
9.4M
BCAS1.F9
BCAS1.R4
Expected peak: 292
9.4M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 292
9.4M
BCAS1.F9
BCAS1.R4
Expected peak: 292
9.4M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 292
9.4M
BCAS1.F9
BCAS1.R4
Expected peak: 292
9.4M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 292
9.4M
BCAS1.F9
BCAS1.R4
Expected peak: 292
9.4M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 292
7.8M
BCAS1.F9
BCAS1.R4
Expected peak: 292
7.8M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 292
7.8M
BCAS1.F9
BCAS1.R4
Expected peak: 292
7.8M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 292
7.8M
BCAS1.F9
BCAS1.R4
Expected peak: 292
7.8M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 292
7.8M
BCAS1.F9
BCAS1.R4
Expected peak: 292
7.8M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 292
14.6M
BCAS1.F9
BCAS1.R4
Expected peak: 292
14.6M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 292
14.6M
BCAS1.F9
BCAS1.R4
Expected peak: 292
14.6M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 292
14.6M
BCAS1.F9
BCAS1.R4
Expected peak: 292
14.6M
BCAS1.F9
BCAS1.R4
Reaction
Expected peak: 292
14.6M
BCAS1.F9
BCAS1.R4
Expected peak: 292
14.6M
BCAS1.F9
BCAS1.R4
Exon
Length: 238
Transcript: BCAS1.gAug05
Length: 238
Transcript: BCAS1.gAug05
Exon
Length: 159
Transcript: BCAS1.gAug05
Length: 159
Transcript: BCAS1.gAug05
Exon
Length: 45
Transcript: BCAS1.gAug05
Length: 45
Transcript: BCAS1.gAug05
Exon
Length: 166
Transcript: BCAS1.gAug05
Length: 166
Transcript: BCAS1.gAug05
Exon
Length: 3943
Transcript: BCAS1.gAug05
Length: 3943
Transcript: BCAS1.gAug05
Exon
Length: 246
Transcript: BCAS1.gAug05
Length: 246
Transcript: BCAS1.gAug05
Intron
Length: 32341
Transcript: BCAS1.gAug05
Length: 32341
Transcript: BCAS1.gAug05
Intron
Length: 835
Transcript: BCAS1.gAug05
Length: 835
Transcript: BCAS1.gAug05
Intron
Length: 2334
Transcript: BCAS1.gAug05
Length: 2334
Transcript: BCAS1.gAug05
Intron
Length: 7012
Transcript: BCAS1.gAug05
Length: 7012
Transcript: BCAS1.gAug05
Intron
Length: 6126
Transcript: BCAS1.gAug05
Length: 6126
Transcript: BCAS1.gAug05
Exon
Length: 385
Transcript: BCAS1.hAug05
Length: 385
Transcript: BCAS1.hAug05
Exon
Length: 45
Transcript: BCAS1.hAug05
Length: 45
Transcript: BCAS1.hAug05
Intron
Length: 1382
Transcript: BCAS1.hAug05
Length: 1382
Transcript: BCAS1.hAug05
Exon
Length: 443
Transcript: BCAS1.shed1.aAug05
Length: 443
Transcript: BCAS1.shed1.aAug05
BCAS1.F9
GACCTCAACGAAGGAGATGC
GACCTCAACGAAGGAGATGC
BCAS1.R4
TCTTCTGCTTGTTCATCTCGG
TCTTCTGCTTGTTCATCTCGG