Back to Rnomics Platform
 Open Session
×
1 warning:
  • Access restricted to public data.
    Please sign in at Rnomics Platform to access your data.
Navigation
Home
Sequences

Sequence XRCC1.fAug05

GCGGCCGCCGCCTCTCACCCAACGCACTACGACGCCCTCATCCTCGTCACCCCTGGGGCCCCCACTGAGAAGGACTGGGCCCAGGTCCAGGCCTTGCTGC
TACCAGATGCGCCTCTTGTCTGCGTGCGCACAGACGGCGAGGGCGAGGATCCGGAGTGTCTGGGAGAAGTTGGAGAAGGAGGAGCAGATACACAGTGTGG
ACATTGGGAATGATGGCTCAGCTTTCGTGGAGGTGCTGGTGGGCAGTTCAGCTGGAGGCGCTGGGGAGCAAGACTATGAGGTCCTTCTGGTCACCTCATC
TTTCATGTCCCCTTCCGAGAGCCGCAGTGGCTCAAACCCCAACCGCGTTCGCATGTTTGGGCCTGACAAGCTGGTCCGGGCAGCCGCCGAGAAGCGCTGG
GACCGGGTCAAAATTGTTTGCAGCCAGCCCTACAGCAAGGACTCCCCCTTTGGCTTGAGTTTTGTACGGTTTCATAGCCCCCCAGACAAAGATGAGGCAG
AGGCCCCGTCCCAGAAGGTGACAGTGACCAAGCTTGGCCAGTTCCGTGTGAAGGAGGAGGATGAGAGCGCCAACTCTCTGAGGCCGGGGGCTCTCTTCTT
CAGCCGGATCAACAAGACATCCCCAGCAAACCACCAGCCCAGCTGTCGCCATCTGTTCCCAAGAGACCTAAATTGCCAGCTCCAACTCGTACCCCAGCCA
CAGCCCCAGTCCCTGCCCGAGCACAGGGGGCAGTGACAGGCAAACCCCGAGGAGAAGGCACCGAGCCCAGACGACCCCGAGCTGGCCCAGAGGAGCTGGG
GAAGATCCTTCAGGGTGTGGTAGTGGTGCTGAGTGGCTTCCAGAACCCCTTCCGCTCCGAGCTGCGAGATAAGGCCCTAGAGCTTGGGGCCAAGTATCGG
CCAGACTGGACCCGGGACAGCACGCACCTCATCTGTGCCTTTGCCAACACCCCCAAGTACAGCCAGGTCCTAGGCCTGGGAGGCCGCATCGTGCGTAAGG
AGTGGGTGCTGGACTGTCACCGCATGCGTCGGCGGCTGCCCTCCCAGAGGTACCTCATGGCAGGGCCAGGTTCCAGCAGTGAGGAGGATGAGGCCTCTCA
CAGCGGTGGCAGCGGAGATGAAGCCCCCAAGCTTCCTCAGAAGCAACCCCAGACCAAAACCAAGCCCACTCAGGCAGCTGGACCCAGCTCACCCCAGAAG
CCCCCAACCCCTGAAGAGACCAAAGCAGCCTCACCAGTGCTCCAGGAAGATATAGACATTGAGGGGGTACAGTCAGAAGGACAGGACAATGGGGCGGAAG
ATTCTGGGGACACAGAGGATGAGCTGAGGAGGGTGGCAGAGCAGAAGGAACACAGACTGCCCCCTGGCCAGGAGGAGAATGGGGAAGACCCGTATGCAGG
CTCCACGGATGAGAACACGGACAGTGAGGAACACCAGGAGCCTCCTGATCTGCCAGTCCCTGAGCTCCCAGATTTCTTCCAGGGCAAGCACTTCTTTCTT
TACGGGGAGTTCCCTGGGGACGAGCGGCGGAAACTCATCCGATACGTCACAGCCTTCAATGGGTGAGTCTCCAGGGAC
  • XRCC1.u.f.14 (forward primer)
  • XRCC1.u.r.18 (reverse primer)
  • Alternative acceptor

Frame 0

AAAASHPTHYDALILVTPGAPTEKDWAQVQALL
LPDAPLVCVRTDGEGEDPECLGEVGEGGADTQCG
HWE*WLSFRGGAGGQFSWRRWGARL*GPSGHLI
FHVPFREPQWLKPQPRSHVWA*QAGPGSRREAL
GPGQNCLQPALQQGLPLWLEFCTVS*PPRQR*GR
GPVPEGDSDQAWPVPCEGGG*ERQLSEAGGSLL
QPDQQDIPSKPPAQLSPSVPKRPKLPAPTRTPA
TAPVPARAQGAVTGKPRGEGTEPRRPRAGPEELG
KILQGVVVVLSGFQNPFRSELRDKALELGAKYR
PDWTRDSTHLICAFANTPKYSQVLGLGGRIVRK
EWVLDCHRMRRRLPSQRYLMAGPGSSSEEDEASH
SGGSGDEAPKLPQKQPQTKTKPTQAAGPSSPQK
PPTPEETKAASPVLQEDIDIEGVQSEGQDNGAE
DSGDTEDELRRVAEQKEHRLPPGQEENGEDPYAG
STDENTDSEEHQEPPDLPVPELPDFFQGKHFFL
YGEFPGDERRKLIRYVTAFNG*VSRD

Frame 1

RPPPLTQRTTTPSSSSPLGPPLRRTGPRSRPCC
YQMRLLSACAQTARARIRSVWEKLEKEEQIHSV
DIGNDGSAFVEVLVGSSAGGAGEQDYEVLLVTSS
FMSPSESRSGSNPNRVRMFGPDKLVRAAAEKRW
DRVKIVCSQPYSKDSPFGLSFVRFHSPPDKDEA
EAPSQKVTVTKLGQFRVKEEDESANSLRPGALFF
SRINKTSPANHQPSCRHLFPRDLNCQLQLVPQP
QPQSLPEHRGQ*QANPEEKAPSPDDPELAQRSW
GRSFRVW*WC*VASRTPSAPSCEIRP*SLGPSIG
QTGPGTARTSSVPLPTPPSTARS*AWEAASCVR
SGCWTVTACVGGCPPRGTSWQGQVPAVRRMRPL
TAVAAEMKPPSFLRSNPRPKPSPLRQLDPAHPRS
PQPLKRPKQPHQCSRKI*TLRGYSQKDRTMGRK
ILGTQRMS*GGWQSRRNTDCPLARRRMGKTRMQ
APRMRTRTVRNTRSLLICQSLSSQISSRASTSFF
TGSSLGTSGGNSSDTSQPSMGESPG

Frame 2

GRRLSPNALRRPHPRHPWGPH*EGLGPGPGLAA
TRCASCLRAHRRRGRGSGVSGRSWRRRSRYTVW
TLGMMAQLSWRCWWAVQLEALGSKTMRSFWSPH
LSCPLPRAAVAQTPTAFACLGLTSWSGQPPRSAG
TGSKLFAASPTARTPPLA*VLYGFIAPQTKMRQ
RPRPRR*Q*PSLASSV*RRRMRAPTL*GRGLSS
SAGSTRHPQQTTSPAVAICSQET*IASSNSYPSH
SPSPCPSTGGSDRQTPRRRHRAQTTPSWPRGAG
EDPSGCGSGAEWLPEPLPLRAAR*GPRAWGQVS
ARLDPGQHAPHLCLCQHPQVQPGPRPGRPHRA*G
VGAGLSPHASAAALPEVPHGRARFQQ*GG*GLS
QRWQRR*SPQASSEATPDQNQAHSGSWTQLTPE
APNP*RDQSSLTSAPGRYRH*GGTVRRTGQWGGR
FWGHRG*AEEGGRAEGTQTAPWPGGEWGRPVCR
LHG*EHGQ*GTPGAS*SASP*APRFLPGQALLS
LRGVPWGRAAETHPIRHSLQWVSLQG

Sequence XRCC1.dAug05

TCCCTTGGCCCCAGGAGACAGGGGTTGCAGAAAGCCGAGATCGTGCCACTGCACTCCATCCTGGGTGAGAGAGCAAGACCCTGTCTCAACAAAAAATTTT
TAAAAAATAAAATAAATAATAATACAGCAAAAAGATTTGCTTTCTCGGCTTCAGTGTGGGCGGTAACTCCATCGTGCAATGAGAAAGGCGAATTTCTTCC
AGACACCAATCCCGGAGGTCGCTTCTGTTGCTAGGCTCCCAGAAAGCAGGGTTCGGACGTCATTGGGAGGCGAGGCTAGAGCGGGGTTGTGTGTGGCGGA
GGGAGGCGGGGCTGGAGGAAACGCTCGTTGCTAAGGAACGCAGCGCTCTTCCCGCTCTGGAGAGGCGCGACTGGGCTTGCGCAGTGTCGACGCCGGCGCC
GGCGCGCCGGGGTTTGAAAGGCCCGAGCCTCGCGCGCTTGCGCACTTTAGCCAGCGCAGGGCGCACCCCGCCCCCTCCCACTCTCCCTGCCCCTCGGACC
CCATACTCTACCTCATCCTTCTGGCCAGGCGAAGCCCACGACGTTGACATGCCGGAGATCCGCCTCCGCCATGTCGTGTCCTGCAGCAGCCAGGACTCGA
CTCACTGTGCAGAAAATCTTCTCAAGGCAGACACTTACCGAAAATGGCGGGCAGCCAAGGCAGGCGAGAAGACCATCTCTGTGGTCCTACAGTTGGAGAA
GGAGGAGCAGATACACAGTGTGGACATTGGGAATGATGGCTCAGCTTTCGTGGAGGTGCTGGTGGGCAGTTCAGCTGGAGGCGCTGGGGAGCAAGACTAT
GAGGTCCTTCTGGTCACCTCATCTTTCATGTCCCCTTCCGAGAGCCGCAGTGGCTCAAACCCCAACCGCGTTCGCATGTTTGGGCCTGACAAGCTGGTCC
GGGCAGCCGCCGAGAAGCGCTGGGACCGGGTCAAAATTGTTTGCAGCCAGCCCTACAGCAAGGACTCCCCCTTTGGCTTGAGTTTTGTACGGTTTCATAG
CCCCCCAGACAAAGATGAGGCAGAGGCCCCGTCCCAGAAGGTGACAGTGACCAAGCTTGGCCAGTTCCGTGTGAAGGAGGAGGATGAGAGCGCCAACTCT
CTGAGGCCGGGGGCTCTCTTCTTCAGCCGGATCAACAAGACATCCCCAGTCACAGCCAGCGACCCAGCAGGACCTAGCTATGCAGCTGCTACCCTCCAGG
CTTCTAGTGCTGCCTCCTCAGCCTCTCCAGTCTCCAGGGCCATAGGCAGCACCTCCAAGGTGAAATCATCAGACTTTGGTGGGGTGGAGGAGGAGAGAAG
CTGGAGGCCTCAATCCATCCCCATCCCCTCAGCCCCAGGAGTCTCCCAAAGGGAAGAGGAAGTTGGATTTGAACCAAGAAGAAAAGAAGACCCCCAGCAA
ACCACCAGCCCAGCTGTCGCCATCTGTTCCCAAGAGACCTAAATTGCCAGCTCCAACTCGTACCCCAGCCACAGCCCCAGTCCCTGCCCGAGCACAGGGG
GCAGTGACAGGCAAACCCCGAGGAGAAGGCACCGAGCCCAGACGACCCCGAGCTGGCCCAGAGGAGCTGGGGAAGATCCTTCAGGGTGTGGTAGTGGTGC
TGAGTGGCTTCCAGAACCCCTTCCGCTCCGAGCTGCGAGATAAGGCCCTAGAGCTTGGGGCCAAGTATCGGCCAGACTGGACCCGGGACAGCACGCACCT
CATCTGTGCCTTTGCCAACACCCCCAAGTACAGCCAGGTCCTAGGCCTGGGAGGCCGCATCGTGCGTAAGGAGTGGGTGCTGGACTGTCACCGCATGCGT
CGGCGGCTGCCCTCCCAGAGGTACCTCATGGCAGGGCCAGGTTCCAGCAGTGAGGAGGATGAGGCCTCTCACAGCGGTGGCAGCGGAGATGAAGCCCCCA
AGCTTCCTCAGAAGCAACCCCAGACCAAAACCAAGCCCACTCAGGCAGCTGGACCCAGCTCACCCCAGAAGCCCCCAACCCCTGAAGAGACCAAAGCAGC
CTCACCAGTGCTCCAGGAAGATATAGACATTGAGGGGGTACAGTCAGAAGGACAGGACAATGGGGCGGAAGATTCTGGGGACACAGAGGATGAGCTGAGG
AGGGTGGCAGAGCAGAAGGAACACAGACTGCCCCCTGGCCAGGAGGAGAATGGGGAAGACCCGTATGCAGGCTCCACGGATGAGAACACGGACAGTGAGG
AACACCAGGAGCCTCCTGATCTGCCAGTCCCTGAGCTCCCAGATTTCTTCCAGGGCAAGCACTTCTTTCTTTACGGGGAGTTCCCTGGGGACGAGCGGCG
GAAACTCATCCGATACGTCACAGCCTTCAATGGGGAGCTCGAGGACAATATGAGTGACCGGGTTCAGTTTGTGATCACAGCACAGGAATGGGATCCCAGC
TTTGAGGAGGCCCTGATGGACAACCCCTCCCTGGCATTCGTTCGTCCCCGATGGATCTACAGTTGCAATGAGAAGCAGAAGTTACTTCCTCACCAGCTCT
ATGGGGTGGTGCCGCAAGCCTGAAGTATGTGCTATACACACACACACACACACACACACACACACACACACACGATGCATTTAATAAAGATGAGTTGGTT
CTCATCCAAGAGTCTCCCAAAACTCTAAGAGGCTCCCTGGGACCTGGGGAAGAATGCTGGGCACCTCCGTCAGAGATCTGGTAGAGAAGGAACTCTTTGT
CTCTTCTGCTTGGCCCCTTATCCCTGTGTTGGCAAGAGGCAGGGAACTGGGAATCTGACCCTCAGCACTGCCCCTCAACTTTTTCTGGCCCTCTGAGCCA
CACCTGTATCTTGGCTGTCCCTTTGTGGCTGGAGGCCTGGGTACCCATGAGGCTTGTCTCTCTCCTGAAGCCTCA
  • XRCC1.u.f.14 (forward primer)
  • XRCC1.u.r.18 (reverse primer)
  • Alternative acceptor

Frame 0

SLGPRRQGLQKAEIVPLHSILGERARPCLNKKF
LKNKINNNTAKRFAFSASVWAVTPSCNEKGEFLP
DTNPGGRFCC*APRKQGSDVIGRRG*SGVVCGG
GRRGWRKRSLLRNAALFPLWRGATGLAQCRRRR
RRAGV*KARASRACAL*PAQGAPRPLPLSLPLGP
HTLPHPSGQAKPTTLTCRRSASAMSCPAAARTR
LTVQKIFSRQTLTENGGQPRQARRPSLWSYSWR
RRSRYTVWTLGMMAQLSWRCWWAVQLEALGSKTM
RSFWSPHLSCPLPRAAVAQTPTAFACLGLTSWS
GQPPRSAGTGSKLFAASPTARTPPLA*VLYGFI
APQTKMRQRPRPRR*Q*PSLASSV*RRRMRAPTL
*GRGLSSSAGSTRHPQSQPATQQDLAMQLLPSR
LLVLPPQPLQSPGP*AAPPR*NHQTLVGWRRRE
AGGLNPSPSPQPQESPKGKRKLDLNQEEKKTPSK
PPAQLSPSVPKRPKLPAPTRTPATAPVPARAQG
AVTGKPRGEGTEPRRPRAGPEELGKILQGVVVV
LSGFQNPFRSELRDKALELGAKYRPDWTRDSTHL
ICAFANTPKYSQVLGLGGRIVRKEWVLDCHRMR
RRLPSQRYLMAGPGSSSEEDEASHSGGSGDEAP
KLPQKQPQTKTKPTQAAGPSSPQKPPTPEETKAA
SPVLQEDIDIEGVQSEGQDNGAEDSGDTEDELR
RVAEQKEHRLPPGQEENGEDPYAGSTDENTDSE
EHQEPPDLPVPELPDFFQGKHFFLYGEFPGDERR
KLIRYVTAFNGELEDNMSDRVQFVITAQEWDPS
FEEALMDNPSLAFVRPRWIYSCNEKQKLLPHQL
YGVVPQA*SMCYTHTHTHTHTHTHTMHLIKMSWF
SSKSLPKL*EAPWDLGKNAGHLRQRSGREGTLC
LFCLAPYPCVGKRQGTGNLTLSTAPQLFLAL*A
TPVSWLSLCGWRPGYP*GLSLS*SL

Frame 1

PLAPGDRGCRKPRSCHCTPSWVREQDPVSTKNF
*KIK*IIIQQKDLLSRLQCGR*LHRAMRKANFF
QTPIPEVASVARLPESRVRTSLGGEARAGLCVAE
GGGAGGNARC*GTQRSSRSGEARLGLRSVDAGA
GAPGFERPEPRALAHFSQRRAHPAPSHSPCPSD
PILYLILLARRSPRR*HAGDPPPPCRVLQQPGLD
SLCRKSSQGRHLPKMAGSQGRREDHLCGPTVGE
GGADTQCGHWE*WLSFRGGAGGQFSWRRWGARL
*GPSGHLIFHVPFREPQWLKPQPRSHVWA*QAGP
GSRREALGPGQNCLQPALQQGLPLWLEFCTVS*
PPRQR*GRGPVPEGDSDQAWPVPCEGGG*ERQL
SEAGGSLLQPDQQDIPSHSQRPSRT*LCSCYPPG
F*CCLLSLSSLQGHRQHLQGEIIRLWWGGGGEK
LEASIHPHPLSPRSLPKGRGSWI*TKKKRRPPA
NHQPSCRHLFPRDLNCQLQLVPQPQPQSLPEHRG
Q*QANPEEKAPSPDDPELAQRSWGRSFRVW*WC
*VASRTPSAPSCEIRP*SLGPSIGQTGPGTART
SSVPLPTPPSTARS*AWEAASCVRSGCWTVTACV
GGCPPRGTSWQGQVPAVRRMRPLTAVAAEMKPP
SFLRSNPRPKPSPLRQLDPAHPRSPQPLKRPKQ
PHQCSRKI*TLRGYSQKDRTMGRKILGTQRMS*G
GWQSRRNTDCPLARRRMGKTRMQAPRMRTRTVR
NTRSLLICQSLSSQISSRASTSFFTGSSLGTSG
GNSSDTSQPSMGSSRTI*VTGFSL*SQHRNGIPA
LRRP*WTTPPWHSFVPDGSTVAMRSRSYFLTSS
MGWCRKPEVCAIHTHTHTHTHTHTRCI**R*VG
SHPRVSQNSKRLPGTWGRMLGTSVRDLVEKELFV
SSAWPLIPVLARGRELGI*PSALPLNFFWPSEP
HLYLGCPFVAGGLGTHEACLSPEAS

Frame 2

PWPQETGVAESRDRATALHPG*ESKTLSQQKIF
KK*NK**YSKKICFLGFSVGGNSIVQ*ERRISS
RHQSRRSLLLLGSQKAGFGRHWEARLERGCVWR
REAGLEETLVAKERSALPALERRDWACAVSTPAP
ARRGLKGPSLARLRTLASAGRTPPPPTLPAPRT
PYSTSSFWPGEAHDVDMPEIRLRHVVSCSSQDS
THCAENLLKADTYRKWRAAKAGEKTISVVLQLEK
EEQIHSVDIGNDGSAFVEVLVGSSAGGAGEQDY
EVLLVTSSFMSPSESRSGSNPNRVRMFGPDKLV
RAAAEKRWDRVKIVCSQPYSKDSPFGLSFVRFHS
PPDKDEAEAPSQKVTVTKLGQFRVKEEDESANS
LRPGALFFSRINKTSPVTASDPAGPSYAAATLQ
ASSAASSASPVSRAIGSTSKVKSSDFGGVEEERS
WRPQSIPIPSAPGVSQREEEVGFEPRRKEDPQQ
TTSPAVAICSQET*IASSNSYPSHSPSPCPSTG
GSDRQTPRRRHRAQTTPSWPRGAGEDPSGCGSGA
EWLPEPLPLRAAR*GPRAWGQVSARLDPGQHAP
HLCLCQHPQVQPGPRPGRPHRA*GVGAGLSPHA
SAAALPEVPHGRARFQQ*GG*GLSQRWQRR*SPQ
ASSEATPDQNQAHSGSWTQLTPEAPNP*RDQSS
LTSAPGRYRH*GGTVRRTGQWGGRFWGHRG*AE
EGGRAEGTQTAPWPGGEWGRPVCRLHG*EHGQ*G
TPGAS*SASP*APRFLPGQALLSLRGVPWGRAA
ETHPIRHSLQWGARGQYE*PGSVCDHSTGMGSQ
L*GGPDGQPLPGIRSSPMDLQLQ*EAEVTSSPAL
WGGAASLKYVLYTHTHTHTHTHTHDAFNKDELV
LIQESPKTLRGSLGPGEECWAPPSEIW*RRNSL
SLLLGPLSLCWQEAGNWESDPQHCPSTFSGPLSH
TCILAVPLWLEAWVPMRLVSLLKP

Copyright ©2008,2017, all rights reserved.