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Sequences

Sequence DPH1.bAug05

CTGCGCTCTCCGCGTTCTTCCAGCGCTGTCTTTTTAGTACCACATGCGCAGGCAGGTGATGGCGGCGCTGGTCGTATCCGGGGCAGCGGAGCAGGGCGGC
CGAGACGGCCCTGGCAGAGGTCGGGCCCCTCGGGGCCGCGTGGCCAATCAGATCCCCCCTGAGATCCTGAAGAACCCTCAGCTGCAGGCAGCAATCCGGG
TCCTGCCTTCCAACTACAACTTTGAGATCCCCAAGACCATCTGGAGGATCCAACAAGCCCAGGCCAAGAAGGTGGCCTTGCAAATGCCGGAAGGCCTCCT
CCTCTTTGCCTGTACCATTGTGGATATCTTGGAAAGGTTCACGGAGGCCGAAGTGATGGTGATGGGTGACGTGACCTACGGGGCTTGCTGTGTGGATGAC
TTCACAGCGAGGGCCCTGGGAGCTGACTTCTTGGTGCACTACGGCCACAGTTGCCTGATTCCCATGGACACCTCGGCCCAAGACTTCCGGGTGCTGTACG
TCTTTGTGGACATCCGGATAGACACTACACACCTCCTGGACTCTCTCCGCCTCACCTTTCCCCCAGCCACTGCCCTTGCCCTGGCAGCCGCCCAGGAGCT
GAAAGCCGAGTATCGTGTGAGTGTCCCACAGTGCAAGCCCCTGTCCCCTGGAGAGATCCTGGGCTGCACATCCCCCCGACTGTCCAAAGAGGTGGAGGCC
GTTGTGTATCTTGGAGATGGCCGCTTCCATCTGGAGTCTGTCATGATTGCCAACCCCAATGTCCCCGCTTACCGGTATGACCCATATAGCAAAGTCCTAT
CCAGAGAACACTATGACCACCAGCGCATGCAGGCTGCTCGCCAAGAAGCCATAGCCACTGCCCGCTCAGCTAAGTCCTGGGGCCTTATTCTGGGCACTTT
GGGCCGCCAGGGCAGTCCTAAGATCCTGGAGCACCTGGAATCTCGACTCCGAGCCTTGGGCCTTTCCTTTGTGAGGCTGCTGCTCTCTGAGATCTTCCCC
AGCAAGCTTAGCCTACTTCCTGAGGTGGATGTGTGGGTGCAGGTGGCATGTCCACGTCTCTCCATTGACTGGGGCACAGCCTTCCCCAAGCCGCTGCTGA
CACCCTATGAGGCGGCCGTGGCTCTGAGGGACATTTCCTGGCAGCAGCCCTACCCGATGGACTTCTACGCTGGCAGCTCCTTGGGGCCCTGGACGGTGAA
CCACGGCCAGGACCGCCGTCCCCACGCCCCGGGCCGGCCCGCGCGGGGGAAGGTGCAGGAGGGGTCCGCGCGTCCCCCTTCGGCCGTGGCTTGCGAGGAC
TGCAGCTGCAGGGACGAGAAGGTGGCGCCGCTGGCTCCTTGACGCGCTCCCGGGCCTCAGGAGAGTGTGCAACTGGCCAGCCAATTTCCCGGAGCCATCA
CCCTCACCCACTCTGGTGGCCACTTCATTCCAGCAGCTGCACCCCAGCGTCAGGCCTACCTCAAGTTCTTGGACCAGTTTGCAGAGTGAAAGATCAAGAA
ATGTCTCTGCTCCTACATCCAGCTCCTCTAGGGGCAGCCTCCGTCATCCATGCCCTCCCAGGACCCTCCACTCACTGCTGTGAGTGCGCCTCACCAGAAC
CAGTTAAGAGACAACTATCAATTCTTGAGACCCAAATTATAAGGGCCCTGCCCTGTACTGAAGAAAAGGGGAGCACAAGGCCTTAATGGACATTGACTTG
TGAAAACGCAAACATGAATATGGTTGGAGAGCCCTGGATTAGGAGGGTGACATGGGGAAGGCAGAGGCTGGCACCATGGTGACTGCCACATAATAAAGTG
GTGATTTGGATTTTGAGCATCTTTTTCCTGGTACACACAGAAAAACATTTTATAATGGAAGTCGGTTTCTTGGCCATCTACATAGTTTTCTGGGCAGCGC
CAAGCAGGGAGGTGTCTCCAGTTGTGAGTCCTCGGACAGGCTGCTGCATGGGTGCACATACTCACGTTATTGGTGGAAGTTTTAAGTCCCAAACTGAAGG
GAAGGAGGCCTAGGTGGCACAATCAGGGAGGAATATACATCTGAGAAGTTTTGGGAAGACATCACCTGGCAAGGCTGCCTGAACCACAGTAATTTAGTCT
TCCTCTATCCAGATCACTGAGAGTTGTGTGCTGGTCTTCTCTCAAACCCTGGATGTGTTACCTGCTTCTCCCTAAGTGCTCTAACCTCGCTGAACTATGA
GCCTGAAGGGTGGGTCGATGCCAGACCTTAGGTGGAGGCCAAAGACAGTACAGAATAAACAGCTTCTTCCTAAATTGACCCCA
  • DPH1.F2 (forward primer)
  • DPH1.R2 (reverse primer)
  • Intron retention

Frame 0

LRSPRSSSAVFLVPHAQAGDGGAGRIRGSGAGR
PRRPWQRSGPSGPRGQSDPP*DPEEPSAAGSNPG
PAFQLQL*DPQDHLEDPTSPGQEGGLANAGRPP
PLCLYHCGYLGKVHGGRSDGDG*RDLRGLLCG*
LHSEGPGS*LLGALRPQLPDSHGHLGPRLPGAVR
LCGHPDRHYTPPGLSPPHLSPSHCPCPGSRPGA
ESRVSCECPTVQAPVPWRDPGLHIPPTVQRGGG
RCVSWRWPLPSGVCHDCQPQCPRLPV*PI*QSPI
QRTL*PPAHAGCSPRSHSHCPLS*VLGPYSGHF
GPPGQS*DPGAPGISTPSLGPFLCEAAAL*DLP
QQA*PTS*GGCVGAGGMSTSLH*LGHSLPQAAAD
TL*GGRGSEGHFLAAALPDGLLRWQLLGALDGE
PRPGPPSPRPGPARAGEGAGGVRASPFGRGLRG
LQLQGREGGAAGSLTRSRASGECATGQPISRSHH
PHPLWWPLHSSSCTPASGLPQVLGPVCRVKDQE
MSLLLHPAPLGAASVIHALPGPSTHCCECASPE
PVKRQLSILETQIIRALPCTEEKGSTRP*WTLTC
ENANMNMVGEPWIRRVTWGRQRLAPW*LPHNKV
VIWILSIFFLVHTEKHFIMEVGFLAIYIVFWAA
PSREVSPVVSPRTGCCMGAHTHVIGGSFKSQTEG
KEA*VAQSGRNIHLRSFGKTSPGKAA*TTVI*S
SSIQITESCVLVFSQTLDVLPASP*VL*PR*TM
SLKGGSMPDLRWRPKTVQNKQLLPKLTP

Frame 1

CALRVLPALSF*YHMRRQVMAALVVSGAAEQGG
RDGPGRGRAPRGRVANQIPPEILKNPQLQAAIR
VLPSNYNFEIPKTIWRIQQAQAKKVALQMPEGLL
LFACTIVDILERFTEAEVMVMGDVTYGACCVDD
FTARALGADFLVHYGHSCLIPMDTSAQDFRVLY
VFVDIRIDTTHLLDSLRLTFPPATALALAAAQEL
KAEYRVSVPQCKPLSPGEILGCTSPRLSKEVEA
VVYLGDGRFHLESVMIANPNVPAYRYDPYSKVL
SREHYDHQRMQAARQEAIATARSAKSWGLILGTL
GRQGSPKILEHLESRLRALGLSFVRLLLSEIFP
SKLSLLPEVDVWVQVACPRLSIDWGTAFPKPLL
TPYEAAVALRDISWQQPYPMDFYAGSSLGPWTVN
HGQDRRPHAPGRPARGKVQEGSARPPSAVACED
CSCRDEKVAPLAP*RAPGPQESVQLASQFPGAI
TLTHSGGHFIPAAAPQRQAYLKFLDQFAE*KIKK
CLCSYIQLL*GQPPSSMPSQDPPLTAVSAPHQN
QLRDNYQFLRPKL*GPCPVLKKRGAQGLNGH*L
VKTQT*IWLESPGLGG*HGEGRGWHHGDCHIIKW
*FGF*ASFSWYTQKNIL*WKSVSWPST*FSGQR
QAGRCLQL*VLGQAAAWVHILTLLVEVLSPKLK
GRRPRWHNQGGIYI*EVLGRHHLARLPEPQ*FSL
PLSRSLRVVCWSSLKPWMCYLLLPKCSNLAEL*
A*RVGRCQTLGGGQRQYRINSFFLN*P

Frame 2

ALSAFFQRCLFSTTCAGR*WRRWSYPGQRSRAA
ETALAEVGPLGAAWPIRSPLRS*RTLSCRQQSG
SCLPTTTLRSPRPSGGSNKPRPRRWPCKCRKAS
SSLPVPLWISWKGSRRPK*W*WVT*PTGLAVWMT
SQRGPWELTSWCTTATVA*FPWTPRPKTSGCCT
SLWTSG*TLHTSWTLSASPFPQPLPLPWQPPRS
*KPSIV*VSHSASPCPLERSWAAHPPDCPKRWRP
LCILEMAASIWSLS*LPTPMSPLTGMTHIAKSY
PENTMTTSACRLLAKKP*PLPAQLSPGALFWAL
WAARAVLRSWSTWNLDSEPWAFPL*GCCSLRSSP
ASLAYFLRWMCGCRWHVHVSPLTGAQPSPSRC*
HPMRRPWL*GTFPGSSPTRWTSTLAAPWGPGR*
TTARTAVPTPRAGPRGGRCRRGPRVPLRPWLART
AAAGTRRWRRWLLDALPGLRRVCNWPANFPEPS
PSPTLVATSFQQLHPSVRPTSSSWTSLQSERSR
NVSAPTSSSSRGSLRHPCPPRTLHSLL*VRLTRT
S*ETTINS*DPNYKGPALY*RKGEHKALMDIDL
*KRKHEYGWRALD*EGDMGKAEAGTMVTAT**S
GDLDFEHLFPGTHRKTFYNGSRFLGHLHSFLGSA
KQGGVSSCESSDRLLHGCTYSRYWWKF*VPN*R
EGGLGGTIREEYTSEKFWEDITWQGCLNHSNLV
FLYPDH*ELCAGLLSNPGCVTCFSLSALTSLNYE
PEGWVDARP*VEAKDSTE*TASS*IDP

Sequence DPH1.dAug05

CTGCGCTCTCCGCGTTCTTCCAGCGCTGTCTTTTTAGTACCACATGCGCAGGCAGGTGATGGCGGCGCTGGTCGTATCCGGGGCAGCGGAGCAGGGCGGC
CGAGACGGCCCTGGCAGAGGTCGGGCCCCTCGGGGCCGCGTGGCCAATCAGATCCCCCCTGAGATCCTGAAGAACCCTCAGCTGCAGGCAGCAATCCGGG
TCCTGCCTTCCAACTACAACTTTGAGATCCCCAAGACCATCTGGAGGATCCAACAAGCCCAGGCCAAGAAGGTGGCCTTGCAAATGCCGGAAGGCCTCCT
CCTCTTTGCCTGTACCATTGTGGATATCTTGGAAAGGTTCACGGAGGCCGAAGTGATGGTGATGGGTGACGTGACCTACGGGGCTTGCTGTGTGGATGAC
TTCACAGCGAGGGCCCTGGGAGCTGACTTCTTGGTGCACTACGGCCACAGTTGCCTGATTCCCATGGACACCTCGGCCCAAGACTTCCGGGTGCTGTACG
TCTTTGTGGACATCCGGATAGACACTACACACCTCCTGGACTCTCTCCGCCTCACCTTTCCCCCAGCCACTGCCCTTGCCCTGGTCAGCACCATTCAGTT
TGTGTCGACCTTGCAGGCAGCCGCCCAGGAGCTGAAAGCCGAGTATCGTGTGAGTGTCCCACAGTGCAAGCCCCTGTCCCCTGGAGAGATCCTGGGCTGC
ACATCCCCCCGACTGTCCAAAGAGGTGGAGGCCGTTGTGTATCTTGGAGATGGCCGCTTCCATCTGGAGTCTGTCATGATTGCCAACCCCAATGTCCCCG
CTTACCGGTATGACCCATATAGCAAAGTCCTATCCAGAGAACACTATGACCACCAGCGCATGCAGGCTGCTCGCCAAGAAGCCATAGCCACTGCCCGCTC
AGCTAAGTCCTGGGGCCTTATTCTGGGCACTTTGGGCCGCCAGGGCAGTCCTAAGATCCTGGAGCACCTGGAATCTCGACTCCGAGCCTTGGGCCTTTCC
TTTGTGAGGCTGCTGCTCTCTGAGATCTTCCCCAGCAAGCTTAGCCTACTTCCTGAGGTGGATGTGCGGCCGTGGCTCTGAGGGACATTTCCTGGCAGCA
GCCCTACCCGATGGACTTCTACGCTGGCAGCTCCTTGGGGCCCTGGACGGTGAACCACGGCCAGGACCGCCGTCCCCACGCCCCGGGCCGGCCCGCGCGG
GGGAAGGTGCAGGAGGGGTCCGCGCGTCCCCCTTCGGCCGTGGCTTGCGAGGACTGCAGCTGCAGGGACGAGAAGGTGGCGCCGCTGGCTCCTTGACGCG
CTC
CCGGGCCTCAGGAGAGTGTGCAACTGGCCAGCCAATTTCCCGGAGCCATCACCCTCACCCACTCTGGTGGCCACTTCATTCCAGCAGCTGCACCCCA
GCGTCAGGCCTACCTCAAGTTCTTGGACCAGTTTGCAGAGTGAAAGATCAAGAAATGTCTCTGCTCCTACATCCAGCTCCTCTAGGGGCAGCCTCCGTCA
TCCATGCCCTCCCAGGACCCTCCACTCACTGCTGTGAGTGCGCCTCACCAGAACCAGTTAAGAGACAACTATCAATTCTTGAGACCCAAATTATAAGGGC
CCTGCCCTGTACTGAAGAAAAGGGGAGCACAAGGCCTTAATGGACATTGACTTGTGAAAACGCAAACATGAATATGGTTGGAGAGCCCTGGATTAGGAGG
GTGACATGGGGAAGGCAGAGGCTGGCACCATGGTGACTGCCACATAATAAAGTGGTGATTTGGATTTTGAGCATCTTTTTCCTGGTACACACAGAAAAAC
ATTTTATAATGGAAGTCGGTTTCTTGGCCATCTACATAGTTTTCTGGGCAGCGCCAAGCAGGGAGGTGTCTCCAGTTGTGAGTCCTCGGACAGGCTGCTG
CATGGGTGCACATACTCACGTTATTGGTGGAAGTTTTAAGTCCCAAACTGAAGGGAAGGAGGCCTAGGTGGCACAATCAGGGAGGAATATACATCTGAGA
AGTTTTGGGAAGACATCACCTGGCAAGGCTGCCTGAACCACAGTAATTTAGTCTTCCTCTATCCAGATCACTGAGAGTTGTGTGCTGGTCTTCTCTCAAA
CCCTGGATGTGTTACCTGCTTCTCCCTAAGTGCTCTAACCTCGCTGAACTATGAGCCTGAAGGGTGGGTCGATGCCAGACCTTAGGTGGAGGCCAAAGAC
AGTACAGAATAAACAGCTTCTTCCTAAATTGACCCCA
  • DPH1.F2 (forward primer)
  • DPH1.R2 (reverse primer)
  • Intron retention

Frame 0

LRSPRSSSAVFLVPHAQAGDGGAGRIRGSGAGR
PRRPWQRSGPSGPRGQSDPP*DPEEPSAAGSNPG
PAFQLQL*DPQDHLEDPTSPGQEGGLANAGRPP
PLCLYHCGYLGKVHGGRSDGDG*RDLRGLLCG*
LHSEGPGS*LLGALRPQLPDSHGHLGPRLPGAVR
LCGHPDRHYTPPGLSPPHLSPSHCPCPGQHHSV
CVDLAGSRPGAESRVSCECPTVQAPVPWRDPGL
HIPPTVQRGGGRCVSWRWPLPSGVCHDCQPQCPR
LPV*PI*QSPIQRTL*PPAHAGCSPRSHSHCPL
S*VLGPYSGHFGPPGQS*DPGAPGISTPSLGPF
LCEAAAL*DLPQQA*PTS*GGCAAVALRDISWQQ
PYPMDFYAGSSLGPWTVNHGQDRRPHAPGRPAR
GKVQEGSARPPSAVACEDCSCRDEKVAPLAP*R
A
PGPQESVQLASQFPGAITLTHSGGHFIPAAAPQ
RQAYLKFLDQFAE*KIKKCLCSYIQLL*GQPPS
SMPSQDPPLTAVSAPHQNQLRDNYQFLRPKL*G
PCPVLKKRGAQGLNGH*LVKTQT*IWLESPGLGG
*HGEGRGWHHGDCHIIKW*FGF*ASFSWYTQKN
IL*WKSVSWPST*FSGQRQAGRCLQL*VLGQAA
AWVHILTLLVEVLSPKLKGRRPRWHNQGGIYI*E
VLGRHHLARLPEPQ*FSLPLSRSLRVVCWSSLK
PWMCYLLLPKCSNLAEL*A*RVGRCQTLGGGQR
QYRINSFFLN*P

Frame 1

CALRVLPALSF*YHMRRQVMAALVVSGAAEQGG
RDGPGRGRAPRGRVANQIPPEILKNPQLQAAIR
VLPSNYNFEIPKTIWRIQQAQAKKVALQMPEGLL
LFACTIVDILERFTEAEVMVMGDVTYGACCVDD
FTARALGADFLVHYGHSCLIPMDTSAQDFRVLY
VFVDIRIDTTHLLDSLRLTFPPATALALVSTIQF
VSTLQAAAQELKAEYRVSVPQCKPLSPGEILGC
TSPRLSKEVEAVVYLGDGRFHLESVMIANPNVP
AYRYDPYSKVLSREHYDHQRMQAARQEAIATARS
AKSWGLILGTLGRQGSPKILEHLESRLRALGLS
FVRLLLSEIFPSKLSLLPEVDVRPWL*GTFPGS
SPTRWTSTLAAPWGPGR*TTARTAVPTPRAGPRG
GRCRRGPRVPLRPWLARTAAAGTRRWRRWLLDA
L
PGLRRVCNWPANFPEPSPSPTLVATSFQQLHP
SVRPTSSSWTSLQSERSRNVSAPTSSSSRGSLRH
PCPPRTLHSLL*VRLTRTS*ETTINS*DPNYKG
PALY*RKGEHKALMDIDL*KRKHEYGWRALD*E
GDMGKAEAGTMVTAT**SGDLDFEHLFPGTHRKT
FYNGSRFLGHLHSFLGSAKQGGVSSCESSDRLL
HGCTYSRYWWKF*VPN*REGGLGGTIREEYTSE
KFWEDITWQGCLNHSNLVFLYPDH*ELCAGLLSN
PGCVTCFSLSALTSLNYEPEGWVDARP*VEAKD
STE*TASS*IDP

Frame 2

ALSAFFQRCLFSTTCAGR*WRRWSYPGQRSRAA
ETALAEVGPLGAAWPIRSPLRS*RTLSCRQQSG
SCLPTTTLRSPRPSGGSNKPRPRRWPCKCRKAS
SSLPVPLWISWKGSRRPK*W*WVT*PTGLAVWMT
SQRGPWELTSWCTTATVA*FPWTPRPKTSGCCT
SLWTSG*TLHTSWTLSASPFPQPLPLPWSAPFS
LCRPCRQPPRS*KPSIV*VSHSASPCPLERSWAA
HPPDCPKRWRPLCILEMAASIWSLS*LPTPMSP
LTGMTHIAKSYPENTMTTSACRLLAKKP*PLPA
QLSPGALFWALWAARAVLRSWSTWNLDSEPWAFP
L*GCCSLRSSPASLAYFLRWMCGRGSEGHFLAA
ALPDGLLRWQLLGALDGEPRPGPPSPRPGPARA
GEGAGGVRASPFGRGLRGLQLQGREGGAAGSLTR
S
RASGECATGQPISRSHHPHPLWWPLHSSSCTP
ASGLPQVLGPVCRVKDQEMSLLLHPAPLGAASV
IHALPGPSTHCCECASPEPVKRQLSILETQIIRA
LPCTEEKGSTRP*WTLTCENANMNMVGEPWIRR
VTWGRQRLAPW*LPHNKVVIWILSIFFLVHTEK
HFIMEVGFLAIYIVFWAAPSREVSPVVSPRTGCC
MGAHTHVIGGSFKSQTEGKEA*VAQSGRNIHLR
SFGKTSPGKAA*TTVI*SSSIQITESCVLVFSQ
TLDVLPASP*VL*PR*TMSLKGGSMPDLRWRPKT
VQNKQLLPKLTP

Sequence DPH1.eAug05

CTTTGGGCCGCCAGGGCAGTCCTAAGATCCTGGAGCACCTGGAATCTCGACTCCGAGCCTTGGGCCTTTCCTTTGTGAGGCTGCTGCTCTCTGAGATCTT
CCCCAGCAAGCTTAGCCTACTTCCTGAGGTGGATGTGTGGGTGCAGGTGGCATGTCCACGTCTCTCCATTGACTGGGGCACAGCCTTCCCCAAGCCGCTG
CTGACACCCTATGAGGCGGCCGTGGCTCTGAGGGACATTTCCTGGCAGCAGCCCTACCCGATGGACTTCTACGCTGGCAGCTCCTTGGGGCCCTGGACGG
TGAACCACGGCCAGGACCGCCGTCCCCACGCCCCGGGCCGGCCCGCGCGGGGGAAGGTGCAGGAGGGGTCCGCGCGTCCCCCTTCGGCCGTGGCTTGCGA
GGACTGCAGCTGCAGGGACGAGAAGGTGGCGCCGCTGGCTCCTTGACGCGCTCCCGGGCCTCAGGTATCAGCCCCCGCTCTGGGTGCGCCCCGCCTTTTG
CCGTTGTCATGGGAACGCCTTGGCGCTCCGAGGCCCGCCCTCGGGGCGGTGCTGACGTTCGGTTCCGCCCCGTGCATTGTGCTTCCGCTCGGGGAAAGAC
CGCTTCCGGTGCTTCCGTCGCTCCTTGCCGGGCATAATGGCCGCGCAGCGACCCCTGCGGGTCCTGTGCCTGGCGGGCTTCCGGCAGAGCGAGCGGGGCT
TCCGTGAGAAGACCGGGGCGCTGAGGAAGGCGCTGCGGGGTCGCGCCGAGCTCGTGTGCCTCAGCGGCCCGCACCCGGTCCCCGACCCCCCGGGCCCCGA
GGGCGCCAGATCAGACTTCGGTGAGACAAGCCCCGCTCCGGAAACGCACTCAGTTTCCTCCATCTTGTTTCGTCCCCCTCGACACCCTTCAGCATCCCCC
ACCCTGCGTCCACCCGCATTCCTCCCACCCAGTCCACACCCTTCATTTCTCGCGACCCATACCCTCTTTGCTCAAACTGCAGCCTGTCCTCCCAGGCTTC
CGCCTTCACCGTCTTCCTCCGCTGTCTCCTGTTCAGGCCAATCCACTCATTTCCCCCCTCTCATTTCCCCCAGACTTTTGCCTCGATTCCCTTTTTCTCT
CTGTCATCTCGAACCCTCCTGCCCTTTCTCATTTCTTTCCTTCCTGGAGCCTCCCATGCCCTAATCCCATCCTTTTTCCTCATATCGCTGTAGGGTCCTG
CCCTCCGGAGGAGCAGCCTCGAGGCTGGTGGTTTTCAGAGCAGGAGGCCGACGTTTTCTCCGCATTGGAAGAGCCCGCCGTCTGCAGGGGCCTGGAGGAA
TCACTGGGGATGGTGGCACAGGCACTGAACAGGCTGGGGCCTTTTGACGGCCTTCTTGGTTTCAGCCAAGGGGCTGCGCTAGCAGCCCTTGTGTGTGCCC
TGGGCCAGGCAGGCGATCCCCGCTTCCCCTTGCCACGGTTTATCCTCTTGGTGTCTGGTTTCTGTCCCCGGGGCATTGGGTTCAAGGAATCCATCCTGCA
AAGGCCCTTGTCATTGCCTTCGCTCCATGTTTTTGGGGACACTGACAAAGTCATCCCCTCTCAG
GAGAGTGTGCAACTGGCCAGCCAATTTCCCGGAGCC
ATCACCCTCACCCACTCTGGTGGCCACTTCATTCCAGCAGCTGCACCCCAGCGTCAGGCCTACCTCAAGTTCTTGGACCAGTTTGCAGAGTGAAAGATCA
AGAAATGTCTCTGCTCCTACATCCAGCTCCTCTAGGGGCAGCCTCCGTCATCCATGCCCTCCCAGGACCCTCCACTCACTGCTGTGAGTGCGCCTCACCA
GAACCAGTTAAGAGACAACTATCAATTCTTGAGACCCAAATTATAAGGGCCCTGCCCTGTACTGAAGAAAAGGGGAGCACAAGGCCTTAATGGACATTGA
CTTGTGAAAACGCAAACATGAATATGGTTGGAGAGCCCTGGATTAGGAGGGTGACATGGGGAAGGCAGAGGCTGGCACCATGGTGACTGCCACATAATAA
AGTGGTGATTTGG
  • DPH1.F2 (forward primer)
  • DPH1.R2 (reverse primer)
  • Intron retention

Frame 0

LWAARAVLRSWSTWNLDSEPWAFPL*GCCSLRS
SPASLAYFLRWMCGCRWHVHVSPLTGAQPSPSRC
*HPMRRPWL*GTFPGSSPTRWTSTLAAPWGPGR
*TTARTAVPTPRAGPRGGRCRRGPRVPLRPWLA
RTAAAGTRRWRRWLLDALPGLRYQPPLWVRPAFC
RCHGNALALRGPPSGRC*RSVPPRALCFRSGKD
RFRCFRRSLPGIMAAQRPLRVLCLAGFRQSERG
FREKTGALRKALRGRAELVCLSGPHPVPDPPGPE
GARSDFGETSPAPETHSVSSILFRPPRHPSASP
TLRPPAFLPPSPHPSFLATHTLFAQTAACPPRL
PPSPSSSAVSCSGQSTHFPPLISPRLLPRFPFSL
CHLEPSCPFSFLSFLEPPMP*SHPFSSYRCRVL
PSGGAASRLVVFRAGGRRFLRIGRARRLQGPGG
ITGDGGTGTEQAGAF*RPSWFQPRGCASSPCVCP
GPGRRSPLPLATVYPLGVWFLSPGHWVQGIHPA
KALVIAFAPCFWGH*QSHPLS
GECATGQPISRS
HHPHPLWWPLHSSSCTPASGLPQVLGPVCRVKDQ
EMSLLLHPAPLGAASVIHALPGPSTHCCECASP
EPVKRQLSILETQIIRALPCTEEKGSTRP*WTL
TCENANMNMVGEPWIRRVTWGRQRLAPW*LPHNK
VVIW

Frame 1

FGPPGQS*DPGAPGISTPSLGPFLCEAAAL*DL
PQQA*PTS*GGCVGAGGMSTSLH*LGHSLPQAA
ADTL*GGRGSEGHFLAAALPDGLLRWQLLGALDG
EPRPGPPSPRPGPARAGEGAGGVRASPFGRGLR
GLQLQGREGGAAGSLTRSRASGISPRSGCAPPF
AVVMGTPWRSEARPRGGADVRFRPVHCASARGKT
ASGASVAPCRA*WPRSDPCGSCAWRASGRASGA
SVRRPGR*GRRCGVAPSSCASAARTRSPTPRAP
RAPDQTSVRQAPLRKRTQFPPSCFVPLDTLQHPP
PCVHPHSSHPVHTLHFSRPIPSLLKLQPVLPGF
RLHRLPPLSPVQANPLISPLSFPPDFCLDSLFL
SVISNPPALSHFFPSWSLPCPNPILFPHIAVGSC
PPEEQPRGWWFSEQEADVFSALEEPAVCRGLEE
SLGMVAQALNRLGPFDGLLGFSQGAALAALVCA
LGQAGDPRFPLPRFILLVSGFCPRGIGFKESILQ
RPLSLPSLHVFGDTDKVIPSQ
ESVQLASQFPGA
ITLTHSGGHFIPAAAPQRQAYLKFLDQFAE*KI
KKCLCSYIQLL*GQPPSSMPSQDPPLTAVSAPHQ
NQLRDNYQFLRPKL*GPCPVLKKRGAQGLNGH*
LVKTQT*IWLESPGLGG*HGEGRGWHHGDCHII
KW*F

Frame 2

LGRQGSPKILEHLESRLRALGLSFVRLLLSEIF
PSKLSLLPEVDVWVQVACPRLSIDWGTAFPKPL
LTPYEAAVALRDISWQQPYPMDFYAGSSLGPWT
VNHGQDRRPHAPGRPARGKVQEGSARPPSAVACE
DCSCRDEKVAPLAP*RAPGPQVSAPALGAPRLL
PLSWERLGAPRPALGAVLTFGSAPCIVLPLGER
PLPVLPSLLAGHNGRAATPAGPVPGGLPAERAGL
P*EDRGAEEGAAGSRRARVPQRPAPGPRPPGPR
GRQIRLR*DKPRSGNALSFLHLVSSPSTPFSIP
HPASTRIPPTQSTPFISRDPYPLCSNCSLSSQAS
AFTVFLRCLLFRPIHSFPPSHFPQTFASIPFFS
LSSRTLLPFLISFLPGASHALIPSFFLISL*GP
ALRRSSLEAGGFQSRRPTFSPHWKSPPSAGAWRN
HWGWWHRH*TGWGLLTAFLVSAKGLR*QPLCVP
WARQAIPASPCHGLSSWCLVSVPGALGSRNPSC
KGPCHCLRSMFLGTLTKSSPLR
RVCNWPANFPEP
SPSPTLVATSFQQLHPSVRPTSSSWTSLQSERS
RNVSAPTSSSSRGSLRHPCPPRTLHSLL*VRLT
RTS*ETTINS*DPNYKGPALY*RKGEHKALMDID
L*KRKHEYGWRALD*EGDMGKAEAGTMVTAT**
SGDL

Sequence DPH1.fAug05

GCCAGGGCAGTCCTAAGATCCTGGAGGTCAGTGGGCTCAGGACAGCCTCTGGAGGAGGGAAGTGACTGGGAACACAGCTGGGAAAACCAGTAGGCCACAG
GTTCAGCTTTGGCTGCTTGACCAGGTGACCCCCACCCTGCCTCCCTCTCCCAACAGCACCTGGAATCTCGACTCCGAGCCTTGGGCCTTTCCTTTGTGAG
GCTGCTGCTCTCTGAGATCTTCCCCAGCAAGCTTAGCCTACTTCCTGAGGTGGATGTGTGAGTATCTGCCTGGCTATGACTGGCTAAAGAAGCTTAGAAG
CTGGGTCTTGCCCAGCTCGTCTTGAAGGCTGGAGCCAACAGGAATTGCTTCCATGGTCATGGAATTTTACTGTTTACAGAGACCTCCCTGGGAGGGCTAA
CTGGGTCATACCTGCTTTGGGACTTTGGGGCTCAGAGGCAATGGCAACATCACATTTGTCCTTGTGAGATGAGTTTGAGCGGTGGCTGACACCTGCCCTG
TACCAGGTACTAAATGTGGTTCTGGGGATACTATCACCAGTGAGCTGCCCTGGAAAGCTCATTGTCGGCAGAGGAAACAGGAGAAAACACGCAACAATAC
AGTATTCCAAACAGCAGTGGGTCACTGTCTTTACTTTAGGATTCATAAAGCCTGTTAATGAATGGGTGTGCTGGGGGCACTGTCATGTTCTTCAGCATGC
TGCCTGGGCGACGAGGAGGCCCTTCCTAGGGTCTGACCTGGCTTCCCTTCCCAGGTGGGTGCAGGTGGCATGTCCACGTCTCTCCATTGACTGGGGCACA
GCCTTCCCCAAGCCGCTGCTGACACCCTATGAGGTAACACCAAGCTCTGGGAGAGAGTGGGCTTTGGACGTGGTTCTCAAAGGTGAGGTCTGGAGTGGAG
TGGGGTGGGTGGGCAGCACTTCGTTATGTTCGTAGATTCCGGAGTCTGTCTCGATTTCTCCAGCGGAGTCACTTCCTAGCTGTGTAGCCTTAGGCAAGGC
CCTGAACCACACAGTTCCCTTCTGTGGCAGGGGACAGTGTGCCCTTCACAGGCCGTCGTGAGGACTGAATTCAGTAATCCAGGGGCAGAAAAACACTGGC
AGATGTTATTGTCCCTCCCTCCCCTCCCCTAGGCGGCCGTGGCTCTGAGGGACATTTCCTGGCAGCAGCCCTACCCGATGGACTTCTACGCTGGCAGCTC
CTTGGGGCCCTGGACGGTGAACCACGGCCAGGACCGCCGTCCCCACGCCCCGGGCCGGCCCGCGCGGGGGAAGGTGCAGGAGGGGTCCGCGCGTCCCCCT
TCGGCCGTGGCTTGCGAGGACTGCAGCTGCAGGGACGAGAAGGTGGCGCCGCTGGCTCCTTGACGCGCTCCCGGGCCTCAGGTATCAGCCCCCGCTCTGG
GTGCGCCCCGCCTTTTGCCGTTGTCATGGGAACGCCTTGGCGCTCCGAGGCCCGCCCTCGGGGCGGTGCTGACGTTCGGTTCCGCCCCGTGCATTGTGCT
TCCGCTCGGGGAAAGACCGCTTCCGGTGCTTCCGTCGCTCCTTGCCGGGCATAATGGCCGCGCAGCGACCCCTGCGGGTCCTGTGCCTGGCGGGCTTCCG
GCAGAGCGAGCGGGGCTTCCGTGAGAAGACCGGGGCGCTGAGGAAGGCGCTGCGGGGTCGCGCCGAGCTCGTGTGCCTCAGCGGCCCGCACCCGGTCCCC
GACCCCCCGGGCCCCGAGGGCGCCAGATCAGACTTCGGTGAGACAAGCCCCGCTCCGGAAACGCACTCAGTTTCCTCCATCTTGTTTCGTCCCCCTCGAC
ACCCTTCAGCATCCCCCACCCTGCGTCCACCCGCATTCCTCCCACCCAGTCCACACCCTTCATTTCTCGCGACCCATACCCTCTTTGCTCAAACTGCAGC
CTGTCCTCCCAGGCTTCCGCCTTCACCGTCTTCCTCCGCTGTCTCCTGTTCAGGCCAATCCACTCATTTCCCCCCTCTCATTTCCCCCAGACTTTTGCCT
CGATTCCCTTTTTCTCTCTGTCATCTCGAACCCTCCTGCCCTTTCTCATTTCTTTCCTTCCTGGAGCCTCCCATGCCCTAATCCCATCCTTTTTCCTCAT
ATCGCTGTAGGGTCCTGCCCTCCGGAGGAGCAGCCTCGAGGCTGGTGGTTTTCAGAGCAGGAGGCCGACGTTTTCTCCGCATTGGAAGAGCCCGCCGTCT
GCAGGGGCCTGGAGGAATCACTGGGGATGGTGGCACAGGCACTGAACAGGCTGGGGCCTTTTGACGGCCTTCTTGGTTTCAGCCAAGGGGCTGCGCTAGC
AGCCCTTGTGTGTGCCCTGGGCCAGGCAGGCGATCCCCGCTTCCCCTTGCCACGGTTTATCCTCTTGGTGTCTGGTTTCTGTCCCCGGGGCATTGGGTTC
AAGGAATCCATCCTGCAAAGGCCCTTGTCATTGCCTTCGCTCCATGTTTTTGGGGACACTGACAAAGTCATCCCCTCTCAG
GAGAGTGTGCAACTGGCCA
GCCAATTTCCCGGAGCCATCACCCTCACCCACTCTGGTGGCCACTTCATTCCAGCAGCTGCACCCCAGCGTCAGGCCTACCTCAAGTTCTTGGACCAGTT
TGCAGAGTGAAAGATCAAGAAATGTCTCTGCTCCTACATCCAGCTCCTCTAGGGGCAGCCTCCGTCATCCATGCCCTCCCAGGACCCTCCACTCACTGCT
GTGAGTGCGCCTCACCAGAACCAGTTAAGAGACAACTATCAATTCTTGAGACCCAAATTATAAGGGCCCTGCCCTGTACTGAAGAAAAGGGGAGCACAAG
GCCTTAATGGACATTGACTTGTGAAAACGCAAACATGAATATGGTTGGAGAGCCCTGGATTAGGAGGGTGACATGGGGAAGGCAGAGGCTGGCACCATGG
TGACTGCCACATAATAAAGTGGTGATTTGG
  • DPH1.F2 (forward primer)
  • DPH1.R2 (reverse primer)
  • Intron retention

Frame 0

ARAVLRSWRSVGSGQPLEEGSDWEHSWENQ*AT
GSALAA*PGDPHPASLSQQHLESRLRALGLSFVR
LLLSEIFPSKLSLLPEVDV*VSAWL*LAKEA*K
LGLAQLVLKAGANRNCFHGHGILLFTETSLGGL
TGSYLLWDFGAQRQWQHHICPCEMSLSGG*HLPC
TRY*MWFWGYYHQ*AALESSLSAEETGENTQQY
SIPNSSGSLSLL*DS*SLLMNGCAGGTVMFFSM
LPGRRGGPS*GLTWLPFPGGCRWHVHVSPLTGAQ
PSPSRC*HPMR*HQALGESGLWTWFSKVRSGVE
WGGWAALRYVRRFRSLSRFLQRSHFLAV*P*AR
P*TTQFPSVAGDSVPFTGRRED*IQ*SRGRKTLA
DVIVPPSPPLGGRGSEGHFLAAALPDGLLRWQL
LGALDGEPRPGPPSPRPGPARAGEGAGGVRASP
FGRGLRGLQLQGREGGAAGSLTRSRASGISPRSG
CAPPFAVVMGTPWRSEARPRGGADVRFRPVHCA
SARGKTASGASVAPCRA*WPRSDPCGSCAWRAS
GRASGASVRRPGR*GRRCGVAPSSCASAARTRSP
TPRAPRAPDQTSVRQAPLRKRTQFPPSCFVPLD
TLQHPPPCVHPHSSHPVHTLHFSRPIPSLLKLQ
PVLPGFRLHRLPPLSPVQANPLISPLSFPPDFCL
DSLFLSVISNPPALSHFFPSWSLPCPNPILFPH
IAVGSCPPEEQPRGWWFSEQEADVFSALEEPAV
CRGLEESLGMVAQALNRLGPFDGLLGFSQGAALA
ALVCALGQAGDPRFPLPRFILLVSGFCPRGIGF
KESILQRPLSLPSLHVFGDTDKVIPSQ
ESVQLA
SQFPGAITLTHSGGHFIPAAAPQRQAYLKFLDQF
AE*KIKKCLCSYIQLL*GQPPSSMPSQDPPLTA
VSAPHQNQLRDNYQFLRPKL*GPCPVLKKRGAQ
GLNGH*LVKTQT*IWLESPGLGG*HGEGRGWHHG
DCHIIKW*F

Frame 1

PGQS*DPGGQWAQDSLWRREVTGNTAGKTSRPQ
VQLWLLDQVTPTLPPSPNSTWNLDSEPWAFPL*
GCCSLRSSPASLAYFLRWMCEYLPGYDWLKKLRS
WVLPSSS*RLEPTGIASMVMEFYCLQRPPWEG*
LGHTCFGTLGLRGNGNITFVLVR*V*AVADTCP
VPGTKCGSGDTITSELPWKAHCRQRKQEKTRNNT
VFQTAVGHCLYFRIHKAC**MGVLGALSCSSAC
CLGDEEALPRV*PGFPSQVGAGGMSTSLH*LGH
SLPQAAADTL*GNTKLWERVGFGRGSQR*GLEWS
GVGGQHFVMFVDSGVCLDFSSGVTS*LCSLRQG
PEPHSSLLWQGTVCPSQAVVRTEFSNPGAEKHW
QMLLSLPPLP*AAVALRDISWQQPYPMDFYAGSS
LGPWTVNHGQDRRPHAPGRPARGKVQEGSARPP
SAVACEDCSCRDEKVAPLAP*RAPGPQVSAPAL
GAPRLLPLSWERLGAPRPALGAVLTFGSAPCIVL
PLGERPLPVLPSLLAGHNGRAATPAGPVPGGLP
AERAGLP*EDRGAEEGAAGSRRARVPQRPAPGP
RPPGPRGRQIRLR*DKPRSGNALSFLHLVSSPST
PFSIPHPASTRIPPTQSTPFISRDPYPLCSNCS
LSSQASAFTVFLRCLLFRPIHSFPPSHFPQTFA
SIPFFSLSSRTLLPFLISFLPGASHALIPSFFLI
SL*GPALRRSSLEAGGFQSRRPTFSPHWKSPPS
AGAWRNHWGWWHRH*TGWGLLTAFLVSAKGLR*
QPLCVPWARQAIPASPCHGLSSWCLVSVPGALGS
RNPSCKGPCHCLRSMFLGTLTKSSPLR
RVCNWP
ANFPEPSPSPTLVATSFQQLHPSVRPTSSSWTS
LQSERSRNVSAPTSSSSRGSLRHPCPPRTLHSLL
*VRLTRTS*ETTINS*DPNYKGPALY*RKGEHK
ALMDIDL*KRKHEYGWRALD*EGDMGKAEAGTM
VTAT**SGDL

Frame 2

QGSPKILEVSGLRTASGGGK*LGTQLGKPVGHR
FSFGCLTR*PPPCLPLPTAPGISTPSLGPFLCE
AAAL*DLPQQA*PTS*GGCVSICLAMTG*RSLE
AGSCPARLEGWSQQELLPWSWNFTVYRDLPGRAN
WVIPALGLWGSEAMATSHLSL*DEFERWLTPAL
YQVLNVVLGILSPVSCPGKLIVGRGNRRKHATI
QYSKQQWVTVFTLGFIKPVNEWVCWGHCHVLQHA
AWATRRPFLGSDLASLPRWVQVACPRLSIDWGT
AFPKPLLTPYEVTPSSGREWALDVVLKGEVWSG
VGWVGSTSLCS*IPESVSISPAESLPSCVALGKA
LNHTVPFCGRGQCALHRPS*GLNSVIQGQKNTG
RCYCPSLPSPRRPWL*GTFPGSSPTRWTSTLAA
PWGPGR*TTARTAVPTPRAGPRGGRCRRGPRVPL
RPWLARTAAAGTRRWRRWLLDALPGLRYQPPLW
VRPAFCRCHGNALALRGPPSGRC*RSVPPRALC
FRSGKDRFRCFRRSLPGIMAAQRPLRVLCLAGFR
QSERGFREKTGALRKALRGRAELVCLSGPHPVP
DPPGPEGARSDFGETSPAPETHSVSSILFRPPR
HPSASPTLRPPAFLPPSPHPSFLATHTLFAQTAA
CPPRLPPSPSSSAVSCSGQSTHFPPLISPRLLP
RFPFSLCHLEPSCPFSFLSFLEPPMP*SHPFSS
YRCRVLPSGGAASRLVVFRAGGRRFLRIGRARRL
QGPGGITGDGGTGTEQAGAF*RPSWFQPRGCAS
SPCVCPGPGRRSPLPLATVYPLGVWFLSPGHWV
QGIHPAKALVIAFAPCFWGH*QSHPLS
GECATGQ
PISRSHHPHPLWWPLHSSSCTPASGLPQVLGPV
CRVKDQEMSLLLHPAPLGAASVIHALPGPSTHC
CECASPEPVKRQLSILETQIIRALPCTEEKGSTR
P*WTLTCENANMNMVGEPWIRRVTWGRQRLAPW
*LPHNKVVIW

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