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Sequences

Sequence DPH1.cAug05

CTGCGCTCTCCGCGTTCTTCCAGCGCTGTCTTTTTAGTACCACATGCGCAGGCAGGTGATGGCGGCGCTGGTCGTATCCGGGGCAGCGGAGCAGGGCGGC CGAGACGGCCCTGGCAGAGGTCGGGCCCCTCGGGGCCGCGTGGCCAATCAGATCCCCCCTGAGATCCTGAAGAACCCTCAGCTGCAGGCAGCAATCCGGG TCCTGCCTTCCAACTACAACTTTGAGATCCCCAAGACCATCTGGAGGATCCAACAAGCCCAGGCCAAGAAGGTGGCCTTGCAAATGCCGGAAGGCCTCCT CCTCTTTGCCTGTACCATTGTGGATATCTTGGAAAGTTCCCATGGACACCTCGGCCCAAGACTTCCGGGTGCTGTACGTCTTTGTGGACATCCGGATAGA CACTACACACCTCCTGGACTCTCTCCGCCTCACCTTTCCCCCAGCCACTGCCCTTGCCCTGGTCAGCACCATTCAGTTTGTGTCGACCTTGCAGGCAGCC GCCCAGGAGCTGAAAGCCGAGTATCGTGTGAGTGTCCCACAGTGCAAGCCCCTGTCCCCTGGAGAGATCCTGGGCTGCACATCCCCCCGACTGTCCAAAG AGGTGGAGGCCGTTGTGTATCTTGGAGATGGCCGCTTCCATCTGGAGTCTGTCATGATTGCCAACCCCAATGTCCCCGCTTACCGGTATGACCCATATAG CAAAGTCCTATCCAGAGAACACTATGACCACCAGCGCATGCAGGCTGCTCGCCAAGAAGCCATAGCCACTGCCCGCTCAGCTAAGTCCTGGGGCCTTATT CTGGGCACTTTGGGCCGCCAGGGCAGTCCTAAGATCCTGGAGCACCTGGAATCTCGACTCCGAGCCTTGGGCCTTTCCTTTGTGAGGCTGCTGCTCTCTG AGATCTTCCCCAGCAAGCTTAGCCTACTTCCTGAGGTGGATGTGTGGGTGCAGGTGGCATGTCCACGTCTCTCCATTGACTGGGGCACAGCCTTCCCCAA GCCGCTGCTGACACCCTATGAGGCGGCCGTGGCTCTGAGGGACATTTCCTGGCAGCAGCCCTACCCGATGGACTTCTACGCTGGCAGCTCCTTGGGGCCC TGGACGGTGAACCACGGCCAGGACCGCCGTCCCCACGCCCCGGGCCGGCCCGCGCGGGGGAAGGTGCAGGAGGGGTCCGCGCGTCCCCCTTCGGCCGTGG CTTGCGAGGACTGCAGCTGCAGGGACGAGAAGGTGGCGCCGCTGGCTCCTTGACGCGCTCCCGGGCCTCAGGGTCCTGCCCTCCGGAGGAGCAGCCTCGA GGCTGGTGGTTTTCAGAGCAGGAGGCCGACGTTTTCTCCGCATTGGAAGAGCCCGCCGTCTGCAGGGGCCTGGAGGAATCACTGGGGATGGTGGCACAGG CACTGAACAGGCTGGGGCCTTTTGACGGCCTTCTTGGTTTCAGCCAAGGGGCTGCGCTAGCAGCCCTTGTGTGTGCCCTGGGCCAGGCAGGCGATCCCCG CTTCCCCTTGCCACGGTTTATCCTCTTGGTGTCTGGTTTCTGTCCCCGGGGCATTGGGTTCAAGGAATCCATCCTGCAAAGGCCCTTGTCATTGCCTTCG CTCCATGTTTTTGGGGACACTGACAAAGTCATCCCCTCTCAGGAGAGTGTGCAACTGGCCAGCCAATTTCCCGGAGCCATCACCCTCACCCACTCTGGTG GCCACTTCATTCCAGCAGCTGCACCCCAGCGTCAGGCCTACCTCAAGTTCTTGGACCAGTTTGCAGAGTGAAAGATCAAGAAATGTCTCTGCTCCTACAT CCAGCTCCTCTAGGGGCAGCCTCCGTCATCCATGCCCTCCCAGGACCCTCCACTCACTGCTGTGAGTGCGCCTCACCAGAACCAGTTAAGAGACAACTAT CAATTCTTGAGACCCAAATTATAAGGGCCCTGCCCTGTACTGAAGAAAAGGGGAGCACAAGGCCTTAATGGACATTGACTTGTGAAAACGCAAACATGAA TATGGTTGGAGAGCCCTGGATTAGGAGGGTGACATGGGGAAGGCAGAGGCTGGCACCATGGTGACTGCCACATAATAAAGTGGTGATTTGGATTTTGAGC ATCTTTTTCCTGGTACACACAGAAAAACATTTTATAATGGAAGTCGGTTTCTTGGCCATCTACATAGTTTTCTGGGCAGCGCCAAGCAGGGAGGTGTCTC CAGTTGTGAGTCCTCGGACAGGCTGCTGCATGGGTGCACATACTCACGTTATTGGTGGAAGTTTTAAGTCCCAAACTGAAGGGAAGGAGGCCTAGGTGGC ACAATCAGGGAGGAATATACATCTGAGAAGTTTTGGGAAGACATCACCTGGCAAGGCTGCCTGAACCACAGTAATTTAGTCTTCCTCTATCCAGATCACT GAGAGTTGTGTGCTGGTCTTCTCTCAAACCCTGGATGTGTTACCTGCTTCTCCCTAAGTGCTCTAACCTCGCTGAACTATGAGCCTGAAGGGTGGGTCGA TGCCAGACCTTAGGTGGAGGCCAAAGACAGTACAGAATAAACAGCTTCTTCCTAAATTGACCCCA

DPH1.F14 (forward primer)
DPH1.R13 (reverse primer)
Alternative acceptor

Frame 0

LRSPRSSSAVFLVPHAQAGDGGAGRIRGSGAGR PRRPWQRSGPSGPRGQSDPP*DPEEPSAAGSNPG PAFQLQL*DPQDHLEDPTSPGQEGGLANAGRPP PLCLYHCGYLGKFPWTPRPKTSGCCTSLWTSG* TLHTSWTLSASPFPQPLPLPWSAPFSLCRPCRQP PRS*KPSIV*VSHSASPCPLERSWAAHPPDCPK RWRPLCILEMAASIWSLS*LPTPMSPLTGMTHI AKSYPENTMTTSACRLLAKKP*PLPAQLSPGALF WALWAARAVLRSWSTWNLDSEPWAFPL*GCCSL RSSPASLAYFLRWMCGCRWHVHVSPLTGAQPSP SRC*HPMRRPWL*GTFPGSSPTRWTSTLAAPWGP GR*TTARTAVPTPRAGPRGGRCRRGPRVPLRPW LARTAAAGTRRWRRWLLDALPGLRVLPSGGAAS RLVVFRAGGRRFLRIGRARRLQGPGGITGDGGTG TEQAGAF*RPSWFQPRGCASSPCVCPGPGRRSP LPLATVYPLGVWFLSPGHWVQGIHPAKALVIAF APCFWGH*QSHPLSGECATGQPISRSHHPHPLWW PLHSSSCTPASGLPQVLGPVCRVKDQEMSLLLH PAPLGAASVIHALPGPSTHCCECASPEPVKRQL SILETQIIRALPCTEEKGSTRP*WTLTCENANMN MVGEPWIRRVTWGRQRLAPW*LPHNKVVIWILS IFFLVHTEKHFIMEVGFLAIYIVFWAAPSREVS PVVSPRTGCCMGAHTHVIGGSFKSQTEGKEA*VA QSGRNIHLRSFGKTSPGKAA*TTVI*SSSIQIT ESCVLVFSQTLDVLPASP*VL*PR*TMSLKGGS MPDLRWRPKTVQNKQLLPKLTP

Frame 1

CALRVLPALSF*YHMRRQVMAALVVSGAAEQGG RDGPGRGRAPRGRVANQIPPEILKNPQLQAAIR VLPSNYNFEIPKTIWRIQQAQAKKVALQMPEGLL LFACTIVDILESSHGHLGPRLPGAVRLCGHPDR HYTPPGLSPPHLSPSHCPCPGQHHSVCVDLAGS RPGAESRVSCECPTVQAPVPWRDPGLHIPPTVQR GGGRCVSWRWPLPSGVCHDCQPQCPRLPV*PI* QSPIQRTL*PPAHAGCSPRSHSHCPLS*VLGPY SGHFGPPGQS*DPGAPGISTPSLGPFLCEAAAL* DLPQQA*PTS*GGCVGAGGMSTSLH*LGHSLPQ AAADTL*GGRGSEGHFLAAALPDGLLRWQLLGA LDGEPRPGPPSPRPGPARAGEGAGGVRASPFGRG LRGLQLQGREGGAAGSLTRSRASGSCPPEEQPR GWWFSEQEADVFSALEEPAVCRGLEESLGMVAQ ALNRLGPFDGLLGFSQGAALAALVCALGQAGDPR FPLPRFILLVSGFCPRGIGFKESILQRPLSLPS LHVFGDTDKVIPSQESVQLASQFPGAITLTHSG GHFIPAAAPQRQAYLKFLDQFAE*KIKKCLCSYI QLL*GQPPSSMPSQDPPLTAVSAPHQNQLRDNY QFLRPKL*GPCPVLKKRGAQGLNGH*LVKTQT* IWLESPGLGG*HGEGRGWHHGDCHIIKW*FGF*A SFSWYTQKNIL*WKSVSWPST*FSGQRQAGRCL QL*VLGQAAAWVHILTLLVEVLSPKLKGRRPRW HNQGGIYI*EVLGRHHLARLPEPQ*FSLPLSRSL RVVCWSSLKPWMCYLLLPKCSNLAEL*A*RVGR CQTLGGGQRQYRINSFFLN*P

Frame 2

ALSAFFQRCLFSTTCAGR*WRRWSYPGQRSRAA ETALAEVGPLGAAWPIRSPLRS*RTLSCRQQSG SCLPTTTLRSPRPSGGSNKPRPRRWPCKCRKAS SSLPVPLWISWKVPMDTSAQDFRVLYVFVDIRID TTHLLDSLRLTFPPATALALVSTIQFVSTLQAA AQELKAEYRVSVPQCKPLSPGEILGCTSPRLSK EVEAVVYLGDGRFHLESVMIANPNVPAYRYDPYS KVLSREHYDHQRMQAARQEAIATARSAKSWGLI LGTLGRQGSPKILEHLESRLRALGLSFVRLLLS EIFPSKLSLLPEVDVWVQVACPRLSIDWGTAFPK PLLTPYEAAVALRDISWQQPYPMDFYAGSSLGP WTVNHGQDRRPHAPGRPARGKVQEGSARPPSAV ACEDCSCRDEKVAPLAP*RAPGPQGPALRRSSLE AGGFQSRRPTFSPHWKSPPSAGAWRNHWGWWHR H*TGWGLLTAFLVSAKGLR*QPLCVPWARQAIP ASPCHGLSSWCLVSVPGALGSRNPSCKGPCHCLR SMFLGTLTKSSPLRRVCNWPANFPEPSPSPTLV ATSFQQLHPSVRPTSSSWTSLQSERSRNVSAPT SSSSRGSLRHPCPPRTLHSLL*VRLTRTS*ETTI NS*DPNYKGPALY*RKGEHKALMDIDL*KRKHE YGWRALD*EGDMGKAEAGTMVTAT**SGDLDFE HLFPGTHRKTFYNGSRFLGHLHSFLGSAKQGGVS SCESSDRLLHGCTYSRYWWKF*VPN*REGGLGG TIREEYTSEKFWEDITWQGCLNHSNLVFLYPDH *ELCAGLLSNPGCVTCFSLSALTSLNYEPEGWVD ARP*VEAKDSTE*TASS*IDP

Sequence DPH1.iAug05

CTGCGCTCTCCGCGTTCTTCCAGCGCTGTCTTTTTAGTACCACATGCGCAGGCAGGTGATGGCGGCGCTGGTCGTATCCGGGGCAGCGGAGCAGGGCGGC CGAGACGGCCCTGGCAGAGGTCGGGCCCCTCGGGGCCGCGTGGCCAATCAGATCCCCCCTGAGATCCTGAAGAACCCTCAGCTGCAGGCAGCAATCCGGG TCCTGCCTTCCAACTACAACTTTGAGATCCCCAAGACCATCTGGAGGATCCAACAAGCCCAGGCCAAGAAGGTGGCCTTGCAAATGCCGGAAGGCCTCCT CCTCTTTGCCTGTACCATTGTGGATATCTTGGAAAGGTTCACGGAGGCCGAAGTGATGGTGATGGGTGACGTGACCTACGGGGCTTGCTGTGTGGATGAC TTCACAGCGAGGGCCCTGGGAGCTGACTTCTTGGTGCACTACGGCCACAGTTGCCTGAGTATGGTGGGGCCAGGACACCTGGACGGTGGCGGGGCTGGCA GGGAGGCAGGCTGCACATTCATCTTCCCCATGGCAGTGCCTTCTTGTCCTGCTTGGAGACACAAGGTCCCTCCTGGTTTCTGGGGTGGCCTCTGCCTTCC CGCTCTGCAGGTAGATCTTTCCTTTGGATTTGGTTGCCTTGGCAACGGTGCTCTGTCCCAGATGCAGGTGTTTGAAAGGCTGTTGGTTGTAGAGCAGGCT GGGCCCCGGCCGGGTGACAGAGAAGTCTGATTGAGAAGGAGCTTCTAGGGGATCTGTGACCCCCCTCTTCTCCTACCCTGTCCTTTTACCCCCAGGCTGA AGCCACTGCGCCTGGCTGCTCAGAGACCTGAGCCTGGCCGGGCCCTCTGCTGCTCCTGCCTTCCCAAACAGCCCCTGAACTCCTCCCTCCCACAGTTCCC ATGGACACCTCGGCCCAAGACTTCCGGGTGCTGTACGTCTTTGTGGACATCCGGATAGACACTACACACCTCCTGGACTCTCTCCGCCTCACCTTTCCCC CAGCCACTGCCCTTGCCCTGGTCAGCACCATTCAGTTTGTGTCGACCTTGCAGGCAGCCGCCCAGGAGCTGAAAGCCGAGTATCGTGTGAGTGTCCCACA GTGCAAGCCCCTGTCCCCTGGAGAGATCCTGGGCTGCACATCCCCCCGACTGTCCAAAGAGGTGGAGGCCGTTGTGTAAGTTAAAAATGGGGGCCAAGTA AGTCCTAGAGACATGCGTGTACCCTGGGAGGGAGCCTGAGGTTCATCATCCAGGAAAGAAACCAAATCTAATGCTCCTTACCTGTGAGCCCGAGGTCACA CTGCAAGGTAGGGACCAAACAGGGAGCAGACCTCAGGTTTACTGTCGCTTTCTCCACTGCCCAGTCCATCATCCAGAAGGCTGTGCAGGGTGGGGGCAGG AATCAGAGGGCCTGATGGGGGTTGAGGGTGGGCTGGAAATGGTGGGAATATAATTGGAGAAGATGGATGGGCACGCCCAGGCTGCAGCCCCATTAATTTA CCATCCGGACAGCTAACAAGCAGAAGCAGCGTGTCTCCTGCCGCCTAATTATTTTAGGTAATGGAAATGCTTAATGTTGTGTGAATGCAGCCAGCCTGAG AGCCGACGGCTCCCCCGACTGGGACTAGGGAAGGGAGTCCCGTTCCGTACTAATGGCAGGGAGGGAGGGTCGCTCCCTGACTCAGTCCCACCTCTGGGGC TTTGGAGGCTGTTTCCACAGGCCTGACACCCCTGTCCCTAGACAGGCCCACATCAGGGCCTTCCCCAGCCCAGATCTGGCAGCCCTGCTCCCCGAGCAGC ACTGAGTGGCATTCCCCCTGTGCCCACGTCACTCAGTCTCTACCCTTGGGGTCTTCAAAGTGTATGTTGGAGGGAGGGACACCCTGAGTGTTAGCCATTC ATCAGAATGAAGTGTGGTCTCCAAGAGGGAGAGAAGGAGCTGCCACAGGCAGGTTATCTTCCACGCTCTGTAATCTTCATGGGCTGGGAAGCTACTGTCA GGGACAGCATGTCTGGGGGCACACTTGGTACAGCCTGGGTTGAGCCTCAGACACACTGCTTCCTAGCTGTTTAATACTAGGCGAGTTTCTTAACATCCCT GAGCCTCAGTTGTTACCTTCTGTAAAACAGGTATACTATACGTATCTGGGAGGATTAGGAGATAGGACTGCGTGAACTAATTCACAGCAGGTACTTAGTC TATGCCTGGTACACAGAAGGCACAAGTCCAATAAACAGTAGCTGTTGGCCGGGCACAGTGGCTCACGCCTGTAATCTCAACACTTTGGGAGGCCAAGGCA GGAGAATTGCATATGTCCAGGAGTTTGAGACCAGCTTGGGGAATATAATGAAACCCTGTTCTCTCC

DPH1.F14 (forward primer)
DPH1.R13 (reverse primer)
Alternative acceptor

Frame 0

LRSPRSSSAVFLVPHAQAGDGGAGRIRGSGAGR PRRPWQRSGPSGPRGQSDPP*DPEEPSAAGSNPG PAFQLQL*DPQDHLEDPTSPGQEGGLANAGRPP PLCLYHCGYLGKVHGGRSDGDG*RDLRGLLCG* LHSEGPGS*LLGALRPQLPEYGGARTPGRWRGWQ GGRLHIHLPHGSAFLSCLETQGPSWFLGWPLPS RSAGRSFLWIWLPWQRCSVPDAGV*KAVGCRAG WAPAG*QRSLIEKELLGDL*PPSSPTLSFYPQAE ATAPGCSET*AWPGPLLLLPSQTAPELLPPTVP MDTSAQDFRVLYVFVDIRIDTTHLLDSLRLTFP PATALALVSTIQFVSTLQAAAQELKAEYRVSVPQ CKPLSPGEILGCTSPRLSKEVEAVV*VKNGGQV SPRDMRVPWEGA*GSSSRKETKSNAPYL*ARGH TAR*GPNREQTSGLLSLSPLPSPSSRRLCRVGAG IRGPDGG*GWAGNGGNIIGEDGWARPGCSPINL PSGQLTSRSSVSPAA*LF*VMEMLNVV*MQPA* EPTAPPTGTREGSPVPY*WQGGRVAP*LSPTSGA LEAVSTGLTPLSLDRPTSGPSPAQIWQPCSPSS TEWHSPCAHVTQSLPLGSSKCMLEGGTP*VLAI HQNEVWSPRGREGAATGRLSSTLCNLHGLGSYCQ GQHVWGHTWYSLG*ASDTLLPSCLILGEFLNIP EPQLLPSVKQVYYTYLGGLGDRTA*TNSQQVLS LCLVHRRHKSNKQ*LLAGHSGSRL*SQHFGRPRQ ENCICPGV*DQLGEYNETLFS

Frame 1

CALRVLPALSF*YHMRRQVMAALVVSGAAEQGG RDGPGRGRAPRGRVANQIPPEILKNPQLQAAIR VLPSNYNFEIPKTIWRIQQAQAKKVALQMPEGLL LFACTIVDILERFTEAEVMVMGDVTYGACCVDD FTARALGADFLVHYGHSCLSMVGPGHLDGGGAG REAGCTFIFPMAVPSCPAWRHKVPPGFWGGLCLP ALQVDLSFGFGCLGNGALSQMQVFERLLVVEQA GPRPGDREV*LRRSF*GICDPPLLLPCPFTPRL KPLRLAAQRPEPGRALCCSCLPKQPLNSSLPQFP WTPRPKTSGCCTSLWTSG*TLHTSWTLSASPFP QPLPLPWSAPFSLCRPCRQPPRS*KPSIV*VSH SASPCPLERSWAAHPPDCPKRWRPLCKLKMGAK* VLETCVYPGREPEVHHPGKKPNLMLLTCEPEVT LQGRDQTGSRPQVYCRFLHCPVHHPEGCAGWGQ ESEGLMGVEGGLEMVGI*LEKMDGHAQAAAPLIY HPDS*QAEAACLLPPNYFR*WKCLMLCECSQPE SRRLPRLGLGKGVPFRTNGREGGSLPDSVPPLG LWRLFPQA*HPCP*TGPHQGLPQPRSGSPAPRAA LSGIPPVPTSLSLYPWGLQSVCWREGHPEC*PF IRMKCGLQEGEKELPQAGYLPRSVIFMGWEATV RDSMSGGTLGTAWVEPQTHCFLAV*Y*ASFLTSL SLSCYLL*NRYTIRIWED*EIGLRELIHSRYLV YAWYTEGTSPINSSCWPGTVAHACNLNTLGGQG RRIAYVQEFETSLGNIMKPCSL

Frame 2

ALSAFFQRCLFSTTCAGR*WRRWSYPGQRSRAA ETALAEVGPLGAAWPIRSPLRS*RTLSCRQQSG SCLPTTTLRSPRPSGGSNKPRPRRWPCKCRKAS SSLPVPLWISWKGSRRPK*W*WVT*PTGLAVWMT SQRGPWELTSWCTTATVA*VWWGQDTWTVAGLA GRQAAHSSSPWQCLLVLLGDTRSLLVSGVASAF PLCR*IFPLDLVALATVLCPRCRCLKGCWL*SRL GPGRVTEKSD*EGASRGSVTPLFSYPVLLPPG* SHCAWLLRDLSLAGPSAAPAFPNSP*TPPSHSS HGHLGPRLPGAVRLCGHPDRHYTPPGLSPPHLSP SHCPCPGQHHSVCVDLAGSRPGAESRVSCECPT VQAPVPWRDPGLHIPPTVQRGGGRCVS*KWGPS KS*RHACTLGGSLRFIIQERNQI*CSLPVSPRSH CKVGTKQGADLRFTVAFSTAQSIIQKAVQGGGR NQRA*WGLRVGWKWWEYNWRRWMGTPRLQPH*F TIRTANKQKQRVSCRLIILGNGNA*CCVNAASLR ADGSPDWD*GRESRSVLMAGREGRSLTQSHLWG FGGCFHRPDTPVPRQAHIRAFPSPDLAALLPEQ H*VAFPLCPRHSVSTLGVFKVYVGGRDTLSVSHS SE*SVVSKRERRSCHRQVIFHAL*SSWAGKLLS GTACLGAHLVQPGLSLRHTAS*LFNTRRVS*HP *ASVVTFCKTGILYVSGRIRR*DCVN*FTAGT*S MPGTQKAQVQ*TVAVGRAQWLTPVISTLWEAKA GELHMSRSLRPAWGI**NPVLS