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Sequences

Sequence C11ORF4.iAug05

CAAGGCTCCTCGTCCGCATCCTTTTTCCTCCCTCCTTCGGCCCCGGGGCTCACATCCTCGCTGCCTCACACCTTGGGCGTGTGTGGGAGCAGGAGAGGGA
TTCTCTGGGGTCCCCATTTGGAACCTGGAGACCCACTTCTGCCAACAAGTCCTTCAGCCCCTCTGGGCCTTAGTTTCCCCCCAGTGAAGTGGGGATAGTG
ACAGCTCCCCCGGGAGCCAGTGAAAACTTTGTGAAGGGAGTGATTACTGCGGGCGAAGGCGCTTGGCACAGCCACAACTGAAGCTCAGCCGTCGGATGTG
ATTATTGTTGCTATTGTTACCGCTCCGCCTGGACTGGGTGCCCGGTCGGAAAGTCCCGCTCCCCGCTCCTCCTCCCAGGCGCGGAAGCTTCGCGCCGCCC
GCCTCGGGGGACACCTCCCGCGCCATCTCGGGGGCACTGGAGATAAGGAAAGGAACCTCCTCCCTGGCTGGGATGGCTGCCCGGGCGCGGGAGGAGGGCC
GGGGACCCGGTGAGGGAGGACCGTAGGGCCCGTGGGGGCTTCACGCCTGGCAGGCGGCCGGCCAGGCCTCCCTCCCTGACATGGAGAGTAACCTGTCTGG
CCTGGTGCCTGCTGCCGGGCTGGTGCCTGCGCTGCCACCTGCTGTGACCCTGGGGCTGACAGCTGCCTACACCACCCTGTATGCCCTGCTCTTCTTCTCC
GTCTATGCCCAGCTCTGGCTGGTGCTTCTGTATGGGCACAAGCGTCTCAGCTATCAGACGGTGTTCCTGGCCCTCTGTCTGCTCTGGGCCGCCTTGCGTA
CCACCCTCTTCTCCTTCTACTTCCGAGATACTCCCCGCGCCAACCGCCTGGGGCCCTTGCCCTTCTGGCTTCTCTACTGCTGCCCCGTCTGCCTGCAGTT
CTTCACCTTGACGCTTATGAACCTCTACTTTGCCCAGGTGGTGTTCAAGGCCAAGGTGAAGCGTCGGCCGGAGATGAGCCGAGGCTTGCGGACCTGGTGA
ATGACCTGGGGAACAAAGGCTACCTGGTATTTGGCCTCATCCTCTTCGTGTGGGAGCTACTGCCCACCACCCTGCTGGTGGGCTTCTTCCGGGTGCACCG
GCCCCCACAGGACCTGAGCACCAGCCACATCCTCAATGGGCAGGTCTTTGCCTCTCGGTCCTACTTCTTTGACCGGGCTGGGCACTGTGAAGATGAGGGC
TGCTCCTGGGAGCACAGCCGGGGTGAGA
  • C11ORF4.F1 (forward primer)
  • C11ORF4.R14 (reverse primer)
  • Single exon skipping

Frame 0

QGSSSASFFLPPSAPGLTSSLPHTLGVCGSRRG
ILWGPHLEPGDPLLPTSPSAPLGLSFPPVKWG**
QLPREPVKTL*RE*LLRAKALGTATTEAQPSDV
IIVAIVTAPPGLGARSESPAPRSSSQARKLRAA
RLGGHLPRHLGGTGDKERNLLPGWDGCPGAGGGP
GTR*GRTVGPVGASRLAGGRPGLPP*HGE*PVW
PGACCRAGACAATCCDPGADSCLHHPVCPALLL
RLCPALAGASVWAQASQLSDGVPGPLSALGRLAY
HPLLLLLPRYSPRQPPGALALLASLLLPRLPAV
LHLDAYEPLLCPGGVQGQGEASAGDEPRLADLV
NDLGNKGYLVFGLILFVWELLPTTLLVGFFRVHR
PPQDLSTSHILNGQVFASRSYFFDRAGHCEDEG
CSWEHSRGE

Frame 1

KAPRPHPFSSLLRPRGSHPRCLTPWACVGAGEG
FSGVPIWNLETHFCQQVLQPLWALVSPQ*SGDS
DSSPGSQ*KLCEGSDYCGRRRLAQPQLKLSRRM*
LLLLLLPLRLDWVPGRKVPLPAPPPRRGSFAPP
ASGDTSRAISGALEIRKGTSSLAGMAARAREEG
RGPGEGGP*GPWGLHAWQAAGQASLPDMESNLSG
LVPAAGLVPALPPAVTLGLTAAYTTLYALLFFS
VYAQLWLVLLYGHKRLSYQTVFLALCLLWAALR
TTLFSFYFRDTPRANRLGPLPFWLLYCCPVCLQF
FTLTLMNLYFAQVVFKAKVKRRPEMSRGLRTW*
MTWGTKATWYLASSSSCGSYCPPPCWWASSGCT
GPHRT*APATSSMGRSLPLGPTSLTGLGTVKMRA
APGSTAGVR

Frame 2

RLLVRILFPPSFGPGAHILAASHLGRVWEQERD
SLGSPFGTWRPTSANKSFSPSGP*FPPSEVGIV
TAPPGASENFVKGVITAGEGAWHSHN*SSAVGC
DYCCYCYRSAWTGCPVGKSRSPLLLPGAEASRRP
PRGTPPAPSRGHWR*GKEPPPWLGWLPGRGRRA
GDPVREDRRARGGFTPGRRPARPPSLTWRVTCL
AWCLLPGWCLRCHLL*PWG*QLPTPPCMPCSSSP
SMPSSGWCFCMGTSVSAIRRCSWPSVCSGPPCV
PPSSPSTSEILPAPTAWGPCPSGFSTAAPSACS
SSP*RL*TSTLPRWCSRPR*SVGRR*AEACGPGE
*PGEQRLPGIWPHPLRVGATAHHPAGGLLPGAP
APTGPEHQPHPQWAGLCLSVLLL*PGWAL*R*G
LLLGAQPG*

Sequence C11ORF4.bAug05

CAAGGCTCCTCGTCCGCATCCTTTTTCCTCCCTCCTTCGGCCCCGGGGCTCACATCCTCGCTGCCTCACACCTTGGGCGTGTGTGGGAGCAGGAGAGGGA
TTCTCTGGGGTCCCCATTTGGAACCTGGAGACCCACTTCTGCCAACAAGTCCTTCAGCCCCTCTGGGCCTTAGTTTCCCCCCAGTGAAGTGGGGATAGTG
ACAGCTCCCCCGGGAGCCAGTGAAAACTTTGTGAAGGGAGTGATTACTGCGGGCGAAGGCGCTTGGCACAGCCACAACTGAAGCTCAGCCGTCGGATGTG
ATTATTGTTGCTATTGTTACCGCTCCGCCTGGACTGGGTGCCCGGTCGGAAAGTCCCGCTCCCCGCTCCTCCTCCCAGGCGCGGAAGCTTCGCGCCGCCC
GCCTCGGGGGACACCTCCCGCGCCATCTCGGGGGCACTGGAGATAAGGAAAGGAACCTCCTCCCTGGCTGGGATGGCTGCCCGGGCGCGGGAGGAGGGCC
GGGGACCCGGTGAGGGAGGACCGTAGGGCCCGTGGGGGCTTCACGCCTGGCAGGCGGCCGGCCAGGCCTCCCTCCCTGACATGGAGAGTAACCTGTCTGG
CCTGGTGCCTGCTGCCGGGCTGGTGCCTGCGCTGCCACCTGCTGTGACCCTGGGGCTGACAGCTGCCTACACCACCCTGTATGCCCTGCTCTTCTTCTCC
GTCTATGCCCAGCTCTGGCTGGTGCTTCTGTATGGGCACAAGCGTCTCAGCTATCAGACGGTGTTCCTGGCCCTCTGTCTGCTCTGGGCCGCCTTGCGTA
CCACCCTCTTCTCCTTCTACTTCCGAGATACTCCCCGCGCCAACCGCCTGGGGCCCTTGCCCTTCTGGCTTCTCTACTGCTGCCCCGTCTGCCTGCAGTT
CTTCACCTTGACGCTTATGAACCTCTACTTTGCCCAGGTGGTGTTCAAGGCCAAGGTGAAGCGTCGGCCGGAGATGAGCCGAGGCTTGCTCGCTGTCCGA
GGGGCCTTTGTGGGGGCCTCGCTGCTCTTTCTGCTGGTGAACGTGCTGTGTGCTGTGCTCTCCCATCGGCGCCGGGCACAGCCCTGGGCCCTGCTGCTTG
TCCGCGTCCTGGTGAGCGACTCCCTGTTCGTCATCTGCGCGCTGTCTCTTGCTGCCTGCCTCTGCCTCGTCGCCAGGCGGGCGCCCTCCACTAGCATCTA
CCTGGAGGCCAAG
GCGGACCTGGTGAATGACCTGGGGAACAAAGGCTACCTGGTATTTGGCCTCATCCTCTTCGTGTGGGAGCTACTGCCCACCACCCTG
CTGGTGGGCTTCTTCCGGGTGCACCGGCCCCCACAGGACCTGAGCACCAGCCACATCCTCAATGGGCAGGTCTTTGCCTCTCGGTCCTACTTCTTTGACC
GGGCTGGGCACTGTGAAGATGAGGGCTGCTCCTGGGAGCACAGCCGGGGTGAGAGCACCAGTATGTCGGGCAGTCTAGGCTCTGGGAGCTGGTATGGTGC
CATCGGGCGTGAGCCGGGCTGGTATGGGGGCAGCCAGACGAAGACCACTCCTCTGCTCTTCTCCCAGGTGCCAGGACCAGGCGGCCACCACCACAGTCTC
TACTCCACCCCACAGACGTGATCCCCCTCCCTCCCCCACAGAATACCCAGGCCCCAGTCCCCCTCACCCTAGGCCCCTGTGCCAAGTTTGTCTGCCGCTT
CTTGCCCAGGATCCTGGGGGTCGTGGCTACCCCCTCCTCTGGCCGGCTCCTTGCTGCTCCTGTCATAGTGAGCTTGTGCCGTCCCCCTAGGATGGGGGGC
ATGGCCCTGGCTGCCAGATGCCCACAGCACCCTGGCATGACCTGCCACCTCTGCTTCCACACCGGAGCCAGCTACCTCTCCTGTGCCTGCCACTCAATAA
ACAGTGTCTGCGCCCCACAGTTGTG
  • C11ORF4.F1 (forward primer)
  • C11ORF4.R14 (reverse primer)
  • Single exon skipping

Frame 0

QGSSSASFFLPPSAPGLTSSLPHTLGVCGSRRG
ILWGPHLEPGDPLLPTSPSAPLGLSFPPVKWG**
QLPREPVKTL*RE*LLRAKALGTATTEAQPSDV
IIVAIVTAPPGLGARSESPAPRSSSQARKLRAA
RLGGHLPRHLGGTGDKERNLLPGWDGCPGAGGGP
GTR*GRTVGPVGASRLAGGRPGLPP*HGE*PVW
PGACCRAGACAATCCDPGADSCLHHPVCPALLL
RLCPALAGASVWAQASQLSDGVPGPLSALGRLAY
HPLLLLLPRYSPRQPPGALALLASLLLPRLPAV
LHLDAYEPLLCPGGVQGQGEASAGDEPRLARCP
RGLCGGLAALSAGERAVCCALPSAPGTALGPAAC
PRPGERLPVRHLRAVSCCLPLPRRQAGALH*HL
PGGQ
GGPGE*PGEQRLPGIWPHPLRVGATAHHP
AGGLLPGAPAPTGPEHQPHPQWAGLCLSVLLL*P
GWAL*R*GLLLGAQPG*EHQYVGQSRLWELVWC
HRA*AGLVWGQPDEDHSSALLPGARTRRPPPQS
LLHPTDVIPLPPPQNTQAPVPLTLGPCAKFVCRF
LPRILGVVATPSSGRLLAAPVIVSLCRPPRMGG
MALAARCPQHPGMTCHLCFHTGASYLSCACHSI
NSVCAPQL

Frame 1

KAPRPHPFSSLLRPRGSHPRCLTPWACVGAGEG
FSGVPIWNLETHFCQQVLQPLWALVSPQ*SGDS
DSSPGSQ*KLCEGSDYCGRRRLAQPQLKLSRRM*
LLLLLLPLRLDWVPGRKVPLPAPPPRRGSFAPP
ASGDTSRAISGALEIRKGTSSLAGMAARAREEG
RGPGEGGP*GPWGLHAWQAAGQASLPDMESNLSG
LVPAAGLVPALPPAVTLGLTAAYTTLYALLFFS
VYAQLWLVLLYGHKRLSYQTVFLALCLLWAALR
TTLFSFYFRDTPRANRLGPLPFWLLYCCPVCLQF
FTLTLMNLYFAQVVFKAKVKRRPEMSRGLLAVR
GAFVGASLLFLLVNVLCAVLSHRRRAQPWALLL
VRVLVSDSLFVICALSLAACLCLVARRAPSTSIY
LEAK
ADLVNDLGNKGYLVFGLILFVWELLPTTL
LVGFFRVHRPPQDLSTSHILNGQVFASRSYFFD
RAGHCEDEGCSWEHSRGESTSMSGSLGSGSWYGA
IGREPGWYGGSQTKTTPLLFSQVPGPGGHHHSL
YSTPQT*SPSLPHRIPRPQSPSP*APVPSLSAA
SCPGSWGSWLPPPLAGSLLLLS**ACAVPLGWGA
WPWLPDAHSTLA*PATSASTPEPATSPVPATQ*
TVSAPHSC

Frame 2

RLLVRILFPPSFGPGAHILAASHLGRVWEQERD
SLGSPFGTWRPTSANKSFSPSGP*FPPSEVGIV
TAPPGASENFVKGVITAGEGAWHSHN*SSAVGC
DYCCYCYRSAWTGCPVGKSRSPLLLPGAEASRRP
PRGTPPAPSRGHWR*GKEPPPWLGWLPGRGRRA
GDPVREDRRARGGFTPGRRPARPPSLTWRVTCL
AWCLLPGWCLRCHLL*PWG*QLPTPPCMPCSSSP
SMPSSGWCFCMGTSVSAIRRCSWPSVCSGPPCV
PPSSPSTSEILPAPTAWGPCPSGFSTAAPSACS
SSP*RL*TSTLPRWCSRPR*SVGRR*AEACSLSE
GPLWGPRCSFCW*TCCVLCSPIGAGHSPGPCCL
SASW*ATPCSSSARCLLLPASASSPGGRPPLAS
TWRPR
RTW*MTWGTKATWYLASSSSCGSYCPPPC
WWASSGCTGPHRT*APATSSMGRSLPLGPTSLT
GLGTVKMRAAPGSTAGVRAPVCRAV*ALGAGMV
PSGVSRAGMGAARRRPLLCSSPRCQDQAATTTVS
TPPHRRDPPPSPTEYPGPSPPHPRPLCQVCLPL
LAQDPGGRGYPLLWPAPCCSCHSELVPSP*DGG
HGPGCQMPTAPWHDLPPLLPHRSQLPLLCLPLNK
QCLRPTVV

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