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Sequences

Sequence C11ORF4.iAug05

CAAGGCTCCTCGTCCGCATCCTTTTTCCTCCCTCCTTCGGCCCCGGGGCTCACATCCTCGCTGCCTCACACCTTGGGCGTGTGTGGGAGCAGGAGAGGGA
TTCTCTGGGGTCCCCATTTGGAACCTGGAGACCCACTTCTGCCAACAAGTCCTTCAGCCCCTCTGGGCCTTAGTTTCCCCCCAGTGAAGTGGGGATAGTG
ACAGCTCCCCCGGGAGCCAGTGAAAACTTTGTGAAGGGAGTGATTACTGCGGGCGAAGGCGCTTGGCACAGCCACAACTGAAGCTCAGCCGTCGGATGTG
ATTATTGTTGCTATTGTTACCGCTCCGCCTGGACTGGGTGCCCGGTCGGAAAGTCCCGCTCCCCGCTCCTCCTCCCAGGCGCGGAAGCTTCGCGCCGCCC
GCCTCGGGGGACACCTCCCGCGCCATCTCGGGGGCACTGGAGATAAGGAAAGGAACCTCCTCCCTGGCTGGGATGGCTGCCCGGGCGCGGGAGGAGGGCC
GGGGACCCGGTGAGGGAGGACCGTAGGGCCCGTGGGGGCTTCACGCCTGGCAGGCGGCCGGCCAGGCCTCCCTCCCTGACATGGAGAGTAACCTGTCTGG
CCTGGTGCCTGCTGCCGGGCTGGTGCCTGCGCTGCCACCTGCTGTGACCCTGGGGCTGACAGCTGCCTACACCACCCTGTATGCCCTGCTCTTCTTCTCC
GTCTATGCCCAGCTCTGGCTGGTGCTTCTGTATGGGCACAAGCGTCTCAGCTATCAGACGGTGTTCCTGGCCCTCTGTCTGCTCTGGGCCGCCTTGCGTA
CCACCCTCTTCTCCTTCTACTTCCGAGATACTCCCCGCGCCAACCGCCTGGGGCCCTTGCCCTTCTGGCTTCTCTACTGCTGCCCCGTCTGCCTGCAGTT
CTTCACCTTGACGCTTATGAACCTCTACTTTGCCCAGGTGGTGTTCAAGGCCAAGGTGAAGCGTCGGCCGGAGATGAGCCGAGGCTTGCGGACCTGGTGA
ATGACCTGGGGAACAAAGGCTACCTGGTATTTGGCCTCATCCTCTTCGTGTGGGAGCTACTGCCCACCACCCTGCTGGTGGGCTTCTTCCGGGTGCACCG
GCCCCCACAGGACCTGAGCACCAGCCACATCCTCAATGGGCAGGTCTTTGCCTCTCGGTCCTACTTCTTTGACCGGGCTGGGCACTGTGAAGATGAGGGC
TGCTCCTGGGAGCACAGCCGGGGTGAGA
  • C11ORF4.F1 (forward primer)
  • C11ORF4.R14 (reverse primer)
  • Exon skipping and alternative donor or acceptor

Frame 0

QGSSSASFFLPPSAPGLTSSLPHTLGVCGSRRG
ILWGPHLEPGDPLLPTSPSAPLGLSFPPVKWG**
QLPREPVKTL*RE*LLRAKALGTATTEAQPSDV
IIVAIVTAPPGLGARSESPAPRSSSQARKLRAA
RLGGHLPRHLGGTGDKERNLLPGWDGCPGAGGGP
GTR*GRTVGPVGASRLAGGRPGLPP*HGE*PVW
PGACCRAGACAATCCDPGADSCLHHPVCPALLL
RLCPALAGASVWAQASQLSDGVPGPLSALGRLAY
HPLLLLLPRYSPRQPPGALALLASLLLPRLPAV
LHLDAYEPLLCPGGVQGQGEASAGDEPRLADLV
NDLGNKGYLVFGLILFVWELLPTTLLVGFFRVHR
PPQDLSTSHILNGQVFASRSYFFDRAGHCEDEG
CSWEHSRGE

Frame 1

KAPRPHPFSSLLRPRGSHPRCLTPWACVGAGEG
FSGVPIWNLETHFCQQVLQPLWALVSPQ*SGDS
DSSPGSQ*KLCEGSDYCGRRRLAQPQLKLSRRM*
LLLLLLPLRLDWVPGRKVPLPAPPPRRGSFAPP
ASGDTSRAISGALEIRKGTSSLAGMAARAREEG
RGPGEGGP*GPWGLHAWQAAGQASLPDMESNLSG
LVPAAGLVPALPPAVTLGLTAAYTTLYALLFFS
VYAQLWLVLLYGHKRLSYQTVFLALCLLWAALR
TTLFSFYFRDTPRANRLGPLPFWLLYCCPVCLQF
FTLTLMNLYFAQVVFKAKVKRRPEMSRGLRTW*
MTWGTKATWYLASSSSCGSYCPPPCWWASSGCT
GPHRT*APATSSMGRSLPLGPTSLTGLGTVKMRA
APGSTAGVR

Frame 2

RLLVRILFPPSFGPGAHILAASHLGRVWEQERD
SLGSPFGTWRPTSANKSFSPSGP*FPPSEVGIV
TAPPGASENFVKGVITAGEGAWHSHN*SSAVGC
DYCCYCYRSAWTGCPVGKSRSPLLLPGAEASRRP
PRGTPPAPSRGHWR*GKEPPPWLGWLPGRGRRA
GDPVREDRRARGGFTPGRRPARPPSLTWRVTCL
AWCLLPGWCLRCHLL*PWG*QLPTPPCMPCSSSP
SMPSSGWCFCMGTSVSAIRRCSWPSVCSGPPCV
PPSSPSTSEILPAPTAWGPCPSGFSTAAPSACS
SSP*RL*TSTLPRWCSRPR*SVGRR*AEACGPGE
*PGEQRLPGIWPHPLRVGATAHHPAGGLLPGAP
APTGPEHQPHPQWAGLCLSVLLL*PGWAL*R*G
LLLGAQPG*

Sequence C11ORF4.dAug05

GCTTTATTAACATTTGGTAGTGAGCACGGCCCCCAGGGCATCGCGGGGGCTCGGGTCCCGGTGACGCAACGGTTAAACCTGGCTCGCGACTTAGCGCAGG
CGCCTGGGGGAAAGCCCGGAGCCTGAGGGCGGGGCCACGGAGCCACTTCCGGCGGCTGTGGGCGGAAAACCCAAAACTTCCGATGGGACCAAGCCTTCCG
TGGCTTCACACGCACCGGAAGGGAATCTGGGTCAGCCCTCCCTCCAAAGGAGACAGCACGGATCCTCTTTTTGCATAGGCCTGAGGGAAGTACTTCCGCC
CATATTCAAGATGGCTGCCCAGGGCAGTGGGAACGGGTGGAGTTTCGGGATGTGGAGCGAAGGTCACTGGGAGGGGGCGGAGCTTCCCCTGCCCAAGTTC
CGATCCCACCAGGACTGGAAGACTCGCGTCCAGCTGGAGCTTTGCCGCATCTGCGTTGCTGTGCCCGCGCTCTTCGGGCGAGGAAGTCCCTTCTGGTGGA
GGGAGAAAAGGGTTACATGAGTTAGATTACCATGGCAGCTCGAGCCAGGCTCTCCACTTCCGTGAGCCTTCCTCTAAGTGAGATCGGGGGGGAGATAATG
AAGGCCACAACTCCCAGGAGGCTCCACGCCGGGCGGTCAGGGACGCTCGCGAGGACGCATGGGCCCCCAGGAATGGGAACTGGTTAGATCCCAGGAACTC
CGTGCCGGAGACGGGAAGAGAGGATGCCTAGGGCCCTAAATGGAAAGGCCAGAGCTGGAGACCTAGCACCCAGAAGATGAGACCGCAATTCGAGAATCAA
AGGGCCGGGAGCGATGGCCTCCCTCCCTGACATGGAGAGTAACCTGTCTGGCCTGGTGCCTGCTGCCGGGCTGGTGCCTGCGCTGCCACCTGCTGTGACC
CTGGGGCTGACAGCTGCCTACACCACCCTGTATGCCCTGCTCTTCTTCTCCGTCTATGCCCAGCTCTGGCTGGTGCTTCTGTATGGGCACAAGCGTCTCA
GCTATCAGACGGTGTTCCTGGCCCTCTGTCTGCTCTGGGCCGCCTTGCGTACCACCCTCTTCTCCTTCTACTTCCGAGATACTCCCCGCGCCAACCGCCT
GGGGCCCTTGCCCTTCTGGCTTCTCTACTGCTGCCCCGTCTGCCTGCAGTTCTTCACCTTGACGCTTATGAACCTCTACTTTGCCCAGGTGGTGTTCAAG
GCCAAGGTGAAGCGTCGGCCGGAGATGAGCCGAGGCTTGCTCGCTGTCCGAGGGGCCTTTGTGGGGGCCTCGCTGCTCTTTCTGCTGGTGAACGTGCTGT
GTGCTGTGCTCTCCCATCGGCGCCGGGCACAGCCCTGGGCCCTGCTGCTTGTCCGCGTCCTGGTGAGCGACTCCCTGTTCGTCATCTGCGCGCTGTCTCT
TGCTGCCTGCCTCTGCCTCGTCGCCAGGCGGGCGCCCTCCACTAGCATCTACCTGGAGGCCAAGGGGACCAGTGTGTGCCAGGCGGCCGCGATGGGTGGC
GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGCTACAACCTGACAGCACTGGCCTTGGCCCCCCAGAGCCGGCTGGACACCTTCGATTACGACTGGTACA
ATGTGTCTGACCAGGTGGGCATACGCATGTCTGCCACCTCCTTAGTAGCCGTGGCACCTTGGCCCCAGCTGGCCTGGGCCCTGTCCCACTACCCCTTTGG
CGTGACTGCAGACTGGCACCAGCCCCTGCCTTCCCACAGGCGGACCTGGTGAATGACCTGGGGAACAAAGGCTACCTGGTATTTGGCCTCATCCTCTTCG
TGTGGGAGCTACTGCCCACCACCCTGCTGGTGGGCTTCTTCCGGGTGCACCGGCCCCCACAGGACCTGAGCACCAGCCACATCCTCAATGGGCAGGTCTT
TGCCTCTCGGTCCTACTTCTTTGACCGGGCTGGGCACTGTGAAGATGAGGGCTGCTCCTGGGAGCACAGCCGGGGTGAGAGCACCAGTATGTCGGGCAGT
CTAGGCTCTGGGAGCTGGTATGGTGCCATCGGGCGTGAGCCGGGCTGGTATGGGGGCAGCCAGACGAAGACCACTCCTCTGCTCTTCTCCCAGGTGCCAG
GACCAGGCGGCCACCACCACAGTCTCTACTCCACCCCACAGACGTGATCCCCCTCCCTCCCCCACAGAATACCCAGGCCCCAGTCCCCCTCACCCTAGGC
CCCTGTGCCAAGTTTGTCTGCCGCTTCTTGCCCAGGATCCTGGGGGTCGTGGCTACCCCCTCCTCTGGCCGGCTCCTTGCTGCTCCTGTCATAGTGAGCT
TGTGCCGTCCCCCTAGGATGGGGGGCATGGCCCTGGCTGCCAGATGCCCACAGCACCCTGGCATGACCTGCCACCTCTGCTTCCACACCGGAGCCAGCTA
CCTCTCCTGTGCCTGCCACTCAATAAACAGTGTCTGCGCCCCACAGTTGTG
  • C11ORF4.F1 (forward primer)
  • C11ORF4.R14 (reverse primer)
  • Exon skipping and alternative donor or acceptor

Frame 0

ALLTFGSEHGPQGIAGARVPVTQRLNLARDLAQ
APGGKPGA*GRGHGATSGGCGRKTQNFRWDQAFR
GFTRTGRESGSALPPKETARILFLHRPEGSTSA
HIQDGCPGQWERVEFRDVERRSLGGGGASPAQV
PIPPGLEDSRPAGALPHLRCCARALRARKSLLVE
GEKGYMS*ITMAARARLSTSVSLPLSEIGGEIM
KATTPRRLHAGRSGTLARTHGPPGMGTG*IPGT
PCRRREERMPRALNGKARAGDLAPRR*DRNSRIK
GPGAMASLPDMESNLSGLVPAAGLVPALPPAVT
LGLTAAYTTLYALLFFSVYAQLWLVLLYGHKRL
SYQTVFLALCLLWAALRTTLFSFYFRDTPRANRL
GPLPFWLLYCCPVCLQFFTLTLMNLYFAQVVFK
AKVKRRPEMSRGLLAVRGAFVGASLLFLLVNVL
CAVLSHRRRAQPWALLLVRVLVSDSLFVICALSL
AACLCLVARRAPSTSIYLEAKGTSVCQAAAMGG
AMVLLYASRACYNLTALALAPQSRLDTFDYDWY
NVSDQVGIRMSATSLVAVAPWPQLAWALSHYPFG
VTADWHQPLPSHRRTW*MTWGTKATWYLASSSS
CGSYCPPPCWWASSGCTGPHRT*APATSSMGRS
LPLGPTSLTGLGTVKMRAAPGSTAGVRAPVCRAV
*ALGAGMVPSGVSRAGMGAARRRPLLCSSPRCQ
DQAATTTVSTPPHRRDPPPSPTEYPGPSPPHPR
PLCQVCLPLLAQDPGGRGYPLLWPAPCCSCHSEL
VPSP*DGGHGPGCQMPTAPWHDLPPLLPHRSQL
PLLCLPLNKQCLRPTVV

Frame 1

LY*HLVVSTAPRASRGLGSR*RNG*TWLAT*RR
RLGESPEPEGGATEPLPAAVGGKPKTSDGTKPS
VASHAPEGNLGQPSLQRRQHGSSFCIGLREVLPP
IFKMAAQGSGNGWSFGMWSEGHWEGAELPLPKF
RSHQDWKTRVQLELCRICVAVPALFGRGSPFWW
REKRVT*VRLPWQLEPGSPLP*AFL*VRSGGR**
RPQLPGGSTPGGQGRSRGRMGPQEWELVRSQEL
RAGDGKRGCLGP*MERPELET*HPEDETAIRES
KGRERWPPSLTWRVTCLAWCLLPGWCLRCHLL*P
WG*QLPTPPCMPCSSSPSMPSSGWCFCMGTSVS
AIRRCSWPSVCSGPPCVPPSSPSTSEILPAPTA
WGPCPSGFSTAAPSACSSSP*RL*TSTLPRWCSR
PR*SVGRR*AEACSLSEGPLWGPRCSFCW*TCC
VLCSPIGAGHSPGPCCLSASW*ATPCSSSARCL
LLPASASSPGGRPPLASTWRPRGPVCARRPRWVA
PWSCSMPAGPATT*QHWPWPPRAGWTPSITTGT
MCLTRWAYACLPPP**PWHLGPSWPGPCPTTPL
A*LQTGTSPCLPTGGPGE*PGEQRLPGIWPHPLR
VGATAHHPAGGLLPGAPAPTGPEHQPHPQWAGL
CLSVLLL*PGWAL*R*GLLLGAQPG*EHQYVGQ
SRLWELVWCHRA*AGLVWGQPDEDHSSALLPGAR
TRRPPPQSLLHPTDVIPLPPPQNTQAPVPLTLG
PCAKFVCRFLPRILGVVATPSSGRLLAAPVIVS
LCRPPRMGGMALAARCPQHPGMTCHLCFHTGASY
LSCACHSINSVCAPQL

Frame 2

FINIW**ARPPGHRGGSGPGDATVKPGSRLSAG
AWGKARSLRAGPRSHFRRLWAENPKLPMGPSLP
WLHTHRKGIWVSPPSKGDSTDPLFA*A*GKYFR
PYSRWLPRAVGTGGVSGCGAKVTGRGRSFPCPSS
DPTRTGRLASSWSFAASALLCPRSSGEEVPSGG
GRKGLHELDYHGSSSQALHFREPSSK*DRGGDN
EGHNSQEAPRRAVRDAREDAWAPRNGNWLDPRNS
VPETGREDA*GPKWKGQSWRPSTQKMRPQFENQ
RAGSDGLPP*HGE*PVWPGACCRAGACAATCCD
PGADSCLHHPVCPALLLRLCPALAGASVWAQASQ
LSDGVPGPLSALGRLAYHPLLLLLPRYSPRQPP
GALALLASLLLPRLPAVLHLDAYEPLLCPGGVQ
GQGEASAGDEPRLARCPRGLCGGLAALSAGERAV
CCALPSAPGTALGPAACPRPGERLPVRHLRAVS
CCLPLPRRQAGALH*HLPGGQGDQCVPGGRDGW
RHGPALCQPGLLQPDSTGLGPPEPAGHLRLRLVQ
CV*PGGHTHVCHLLSSRGTLAPAGLGPVPLPLW
RDCRLAPAPAFPQADLVNDLGNKGYLVFGLILF
VWELLPTTLLVGFFRVHRPPQDLSTSHILNGQVF
ASRSYFFDRAGHCEDEGCSWEHSRGESTSMSGS
LGSGSWYGAIGREPGWYGGSQTKTTPLLFSQVP
GPGGHHHSLYSTPQT*SPSLPHRIPRPQSPSP*A
PVPSLSAASCPGSWGSWLPPPLAGSLLLLS**A
CAVPLGWGAWPWLPDAHSTLA*PATSASTPEPA
TSPVPATQ*TVSAPHSC

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