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Sequences

Sequence C11ORF4.iAug05

CAAGGCTCCTCGTCCGCATCCTTTTTCCTCCCTCCTTCGGCCCCGGGGCTCACATCCTCGCTGCCTCACACCTTGGGCGTGTGTGGGAGCAGGAGAGGGA
TTCTCTGGGGTCCCCATTTGGAACCTGGAGACCCACTTCTGCCAACAAGTCCTTCAGCCCCTCTGGGCCTTAGTTTCCCCCCAGTGAAGTGGGGATAGTG
ACAGCTCCCCCGGGAGCCAGTGAAAACTTTGTGAAGGGAGTGATTACTGCGGGCGAAGGCGCTTGGCACAGCCACAACTGAAGCTCAGCCGTCGGATGTG
ATTATTGTTGCTATTGTTACCGCTCCGCCTGGACTGGGTGCCCGGTCGGAAAGTCCCGCTCCCCGCTCCTCCTCCCAGGCGCGGAAGCTTCGCGCCGCCC
GCCTCGGGGGACACCTCCCGCGCCATCTCGGGGGCACTGGAGATAAGGAAAGGAACCTCCTCCCTGGCTGGGATGGCTGCCCGGGCGCGGGAGGAGGGCC
GGGGACCCGGTGAGGGAGGACCGTAGGGCCCGTGGGGGCTTCACGCCTGGCAGGCGGCCGGCCAGGCCTCCCTCCCTGACATGGAGAGTAACCTGTCTGG
CCTGGTGCCTGCTGCCGGGCTGGTGCCTGCGCTGCCACCTGCTGTGACCCTGGGGCTGACAGCTGCCTACACCACCCTGTATGCCCTGCTCTTCTTCTCC
GTCTATGCCCAGCTCTGGCTGGTGCTTCTGTATGGGCACAAGCGTCTCAGCTATCAGACGGTGTTCCTGGCCCTCTGTCTGCTCTGGGCCGCCTTGCGTA
CCACCCTCTTCTCCTTCTACTTCCGAGATACTCCCCGCGCCAACCGCCTGGGGCCCTTGCCCTTCTGGCTTCTCTACTGCTGCCCCGTCTGCCTGCAGTT
CTTCACCTTGACGCTTATGAACCTCTACTTTGCCCAGGTGGTGTTCAAGGCCAAGGTGAAGCGTCGGCCGGAGATGAGCCGAGGCTTGCGGACCTGGTGA
ATGACCTGGGGAACAAAGGCTACCTGGTATTTGGCCTCATCCTCTTCGTGTGGGAGCTACTGCCCACCACCCTGCTGGTGGGCTTCTTCCGGGTGCACCG
GCCCCCACAGGACCTGAGCACCAGCCACATCCTCAATGGGCAGGTCTTTGCCTCTCGGTCCTACTTCTTTGACCGGGCTGGGCACTGTGAAGATGAGGGC
TGCTCCTGGGAGCACAGCCGGGGTGAGA
  • C11ORF4.F1 (forward primer)
  • C11ORF4.R14 (reverse primer)
  • Multiple exon skipping

Frame 0

QGSSSASFFLPPSAPGLTSSLPHTLGVCGSRRG
ILWGPHLEPGDPLLPTSPSAPLGLSFPPVKWG**
QLPREPVKTL*RE*LLRAKALGTATTEAQPSDV
IIVAIVTAPPGLGARSESPAPRSSSQARKLRAA
RLGGHLPRHLGGTGDKERNLLPGWDGCPGAGGGP
GTR*GRTVGPVGASRLAGGRPGLPP*HGE*PVW
PGACCRAGACAATCCDPGADSCLHHPVCPALLL
RLCPALAGASVWAQASQLSDGVPGPLSALGRLAY
HPLLLLLPRYSPRQPPGALALLASLLLPRLPAV
LHLDAYEPLLCPGGVQGQGEASAGDEPRLADLV
NDLGNKGYLVFGLILFVWELLPTTLLVGFFRVHR
PPQDLSTSHILNGQVFASRSYFFDRAGHCEDEG
CSWEHSRGE

Frame 1

KAPRPHPFSSLLRPRGSHPRCLTPWACVGAGEG
FSGVPIWNLETHFCQQVLQPLWALVSPQ*SGDS
DSSPGSQ*KLCEGSDYCGRRRLAQPQLKLSRRM*
LLLLLLPLRLDWVPGRKVPLPAPPPRRGSFAPP
ASGDTSRAISGALEIRKGTSSLAGMAARAREEG
RGPGEGGP*GPWGLHAWQAAGQASLPDMESNLSG
LVPAAGLVPALPPAVTLGLTAAYTTLYALLFFS
VYAQLWLVLLYGHKRLSYQTVFLALCLLWAALR
TTLFSFYFRDTPRANRLGPLPFWLLYCCPVCLQF
FTLTLMNLYFAQVVFKAKVKRRPEMSRGLRTW*
MTWGTKATWYLASSSSCGSYCPPPCWWASSGCT
GPHRT*APATSSMGRSLPLGPTSLTGLGTVKMRA
APGSTAGVR

Frame 2

RLLVRILFPPSFGPGAHILAASHLGRVWEQERD
SLGSPFGTWRPTSANKSFSPSGP*FPPSEVGIV
TAPPGASENFVKGVITAGEGAWHSHN*SSAVGC
DYCCYCYRSAWTGCPVGKSRSPLLLPGAEASRRP
PRGTPPAPSRGHWR*GKEPPPWLGWLPGRGRRA
GDPVREDRRARGGFTPGRRPARPPSLTWRVTCL
AWCLLPGWCLRCHLL*PWG*QLPTPPCMPCSSSP
SMPSSGWCFCMGTSVSAIRRCSWPSVCSGPPCV
PPSSPSTSEILPAPTAWGPCPSGFSTAAPSACS
SSP*RL*TSTLPRWCSRPR*SVGRR*AEACGPGE
*PGEQRLPGIWPHPLRVGATAHHPAGGLLPGAP
APTGPEHQPHPQWAGLCLSVLLL*PGWAL*R*G
LLLGAQPG*

Sequence C11ORF4.aAug05

GGCTATGGGCGGAAGTTTTCTTCAGAGACCGAGGGACGGGAATCCGTTGCCGCCCCCGGCCGGGCGGCACGACCCCGATTTGGGTATAGGAGAGAGGAGC
GTGGGAACTGGCGGACCCCCATACAAGTAAAGGCGGGCGGCACGGGGCACGGCCCACCCGGGGACCCCCTGGATGCGGCACGGCCCCCGCAACTCGGCCG
CCCTCCTGCCGCCTCCCGTAACCCCGGGCGCCCGCCAGCGGCGCAGCTCGCGCCAATTCTCGTACGGTTTCACGCCGGGTGCGGCGCTGGACTGCGGAGC
CAGCCGGGCCGCTGCGCAATTTGCGTAGCGAACGGCGCCCGCGCAGGCGCGGAGGGGGAGGGGGGCGGAGCAGCGGGAGCCGGGGAGCCGGAGCCCCGGG
TCCCCACGACCTGAGCCGGCTCTCCCATCAGCGGCCTGAGGACCTGGCGTCCGCCTCCTCCCTCCCCTTGAGGCTGGAGCGTGGACGCGGTGGGGGAGGG
TGGGGCGGGGGCAGCTTTCGAGAATTACGAGGACAGGAGGCAGAGGCCCTCCCCATCCGCATTATTGGAGGAGAGAGAGCCTCCCCCAGCTTGGGGAGGG
GGAGAGCGGGGCATTGGGCGCCCCTCGCAGCGGCCGCTGCCCTGACCCGACGGGTATCAGCCGGCTCTCCCCCTCCACCCAGGACGACATGAACGACCGA
GGCCAGGGAGTCCTCTCCTTGGGCCTCTGCATCCCCCCATCCTTGGCTCTGGGGTAGGCCCAGGGAGGAGACACCCCCAACCCCTATCCGGTCTGTCCTG
GAGAAAAGAGACTGCCCTTCCATGCCCCTGAGTGAGGGGCCTGGGGCCCAGGCTGCCTGTGTTCCCCAAGGGCAAGGGTCTCTCTGTTGAGGAGGAGGGG
CCTGTCAGCCACAACTTCTTTCCTCCTGAGCGCCCCATCTCCCTCTCTGCACCCTGCAATTCCCACCCCTCCGTATTTATTTCCCTGGTCCCGCCGACAG
TCCCTCCTTGTCTGTCTCCGGGATTCAGGCCTCCCTCCCTGACATGGAGAGTAACCTGTCTGGCCTGGTGCCTGCTGCCGGGCTGGTGCCTGCGCTGCCA
CCTGCTGTGACCCTGGGGCTGACAGCTGCCTACACCACCCTGTATGCCCTGCTCTTCTTCTCCGTCTATGCCCAGCTCTGGCTGGTGCTTCTGTATGGGC
ACAAGCGTCTCAGCTATCAGACGGTGTTCCTGGCCCTCTGTCTGCTCTGGGCCGCCTTGCGTACCACCCTCTTCTCCTTCTACTTCCGAGATACTCCCCG
CGCCAACCGCCTGGGGCCCTTGCCCTTCTGGCTTCTCTACTGCTGCCCCGTCTGCCTGCAGTTCTTCACCTTGACGCTTATGAACCTCTACTTTGCCCAG
GTGGTGTTCAAGGCCAAGGTGAAGCGTCGGCCGGAGATGAGCCGAGGCTTGCTCGCTGTCCGAGGGGCCTTTGTGGGGGCCTCGCTGCTCTTTCTGCTGG
TGAACGTGCTGTGTGCTGTGCTCTCCCATCGGCGCCGGGCACAGCCCTGGGCCCTGCTGCTTGTCCGCGTCCTGGTGAGCGACTCCCTGTTCGTCATCTG
CGCGCTGTCTCTTGCTGCCTGCCTCTGCCTCGTCGCCAGGCGGGCGCCCTCCACTAGCATCTACCTGGAGGCCAAGGGGACCAGTGTGTGCCAGGCGGCC
GCGATGGGTGGCGCCATGGTCCTGCTCTATGCCAGCCGGGCCTGCTACAACCTGACAGCACTGGCCTTGGCCCCCCAGAGCCGGCTGGACACCTTCGATT
ACGACTGGTACAATGTGTCTGACCAGGCGGACCTGGTGAATGACCTGGGGAACAAAGGCTACCTGGTATTTGGCCTCATCCTCTTCGTGTGGGAGCTACT
GCCCACCACCCTGCTGGTGGGCTTCTTCCGGGTGCACCGGCCCCCACAGGACCTGAGCACCAGCCACATCCTCAATGGGCAGGTCTTTGCCTCTCGGTCC
TACTTCTTTGACCGGGCTGGGCACTGTGAAGATGAGGGCTGCTCCTGGGAGCACAGCCGGGGTGAGAGCACCAGTATGTCGGGCAGTCTAGGCTCTGGGA
GCTGGTATGGTGCCATCGGGCGTGAGCCGGGCTGGTATGGGGGCAGCCAGACGAAGACCACTCCTCTGCTCTTCTCCCAGGTGCCAGGACCAGGCGGCCA
CCACCACAGTCTCTACTCCACCCCACAGACGTGATCCCCCTCCCTCCCCCACAGAATACCCAGGCCCCAGTCCCCCTCACCCTAGGCCCCTGTGCCAAGT
TTGTCTGCCGCTTCTTGCCCAGGATCCTGGGGGTCGTGGCTACCCCCTCCTCTGGCCGGCTCCTTGCTGCTCCTGTCATAGTGAGCTTGTGCCGTCCCCC
TAGGATGGGGGGCATGGCCCTGGCTGCCAGATGCCCACAGCACCCTGGCATGACCTGCCACCTCTGCTTCCACACCGGAGCCAGCTACCTCTCCTGTGCC
TGCCACTCAATAAACAGTGTCTGCGCCCCACAGTTGTG
  • C11ORF4.F1 (forward primer)
  • C11ORF4.R14 (reverse primer)
  • Multiple exon skipping

Frame 0

GYGRKFSSETEGRESVAAPGRAARPRFGYRREE
RGNWRTPIQVKAGGTGHGPPGDPLDAARPPQLGR
PPAASRNPGRPPAAQLAPILVRFHAGCGAGLRS
QPGRCAICVANGARAGAEGEGGGAAGAGEPEPR
VPTT*AGSPISGLRTWRPPPPSP*GWSVDAVGEG
GAGAAFENYEDRRQRPSPSALLEEREPPPAWGG
GERGIGRPSQRPLP*PDGYQPALPLHPGRHERP
RPGSPLLGPLHPPILGSGVGPGRRHPQPLSGLSW
RKETALPCP*VRGLGPRLPVFPKGKGLSVEEEG
PVSHNFFPPERPISLSAPCNSHPSVFISLVPPT
VPPCLSPGFRPPSLTWRVTCLAWCLLPGWCLRCH
LL*PWG*QLPTPPCMPCSSSPSMPSSGWCFCMG
TSVSAIRRCSWPSVCSGPPCVPPSSPSTSEILP
APTAWGPCPSGFSTAAPSACSSSP*RL*TSTLPR
WCSRPR*SVGRR*AEACSLSEGPLWGPRCSFCW
*TCCVLCSPIGAGHSPGPCCLSASW*ATPCSSS
ARCLLLPASASSPGGRPPLASTWRPRGPVCARRP
RWVAPWSCSMPAGPATT*QHWPWPPRAGWTPSI
TTGTMCLTRRTW*MTWGTKATWYLASSSSCGSY
CPPPCWWASSGCTGPHRT*APATSSMGRSLPLGP
TSLTGLGTVKMRAAPGSTAGVRAPVCRAV*ALG
AGMVPSGVSRAGMGAARRRPLLCSSPRCQDQAA
TTTVSTPPHRRDPPPSPTEYPGPSPPHPRPLCQV
CLPLLAQDPGGRGYPLLWPAPCCSCHSELVPSP
*DGGHGPGCQMPTAPWHDLPPLLPHRSQLPLLC
LPLNKQCLRPTVV

Frame 1

AMGGSFLQRPRDGNPLPPPAGRHDPDLGIGERS
VGTGGPPYK*RRAARGTAHPGTPWMRHGPRNSA
ALLPPPVTPGARQRRSSRQFSYGFTPGAALDCGA
SRAAAQFA*RTAPAQARRGRGAEQREPGSRSPG
SPRPEPALPSAA*GPGVRLLPPLEAGAWTRWGR
VGRGQLSRITRTGGRGPPHPHYWRRESLPQLGEG
ESGALGAPRSGRCPDPTGISRLSPSTQDDMNDR
GQGVLSLGLCIPPSLALG*AQGGDTPNPYPVCP
GEKRLPFHAPE*GAWGPGCLCSPRARVSLLRRRG
LSATTSFLLSAPSPSLHPAIPTPPYLFPWSRRQ
SLLVCLRDSGLPP*HGE*PVWPGACCRAGACAA
TCCDPGADSCLHHPVCPALLLRLCPALAGASVWA
QASQLSDGVPGPLSALGRLAYHPLLLLLPRYSP
RQPPGALALLASLLLPRLPAVLHLDAYEPLLCP
GGVQGQGEASAGDEPRLARCPRGLCGGLAALSAG
ERAVCCALPSAPGTALGPAACPRPGERLPVRHL
RAVSCCLPLPRRQAGALH*HLPGGQGDQCVPGG
RDGWRHGPALCQPGLLQPDSTGLGPPEPAGHLRL
RLVQCV*PGGPGE*PGEQRLPGIWPHPLRVGAT
AHHPAGGLLPGAPAPTGPEHQPHPQWAGLCLSV
LLL*PGWAL*R*GLLLGAQPG*EHQYVGQSRLWE
LVWCHRA*AGLVWGQPDEDHSSALLPGARTRRP
PPQSLLHPTDVIPLPPPQNTQAPVPLTLGPCAK
FVCRFLPRILGVVATPSSGRLLAAPVIVSLCRPP
RMGGMALAARCPQHPGMTCHLCFHTGASYLSCA
CHSINSVCAPQL

Frame 2

LWAEVFFRDRGTGIRCRPRPGGTTPIWV*ERGA
WELADPHTSKGGRHGARPTRGPPGCGTAPATRP
PSCRLP*PRAPASGAARANSRTVSRRVRRWTAE
PAGPLRNLRSERRPRRRGGGGGRSSGSRGAGAPG
PHDLSRLSHQRPEDLASASSLPLRLERGRGGGG
WGGGSFRELRGQEAEALPIRIIGGERASPSLGR
GRAGHWAPLAAAAALTRRVSAGSPPPPRTT*TTE
ARESSPWASASPHPWLWGRPREETPPTPIRSVL
EKRDCPSMPLSEGPGAQAACVPQGQGSLC*GGG
ACQPQLLSS*APHLPLCTLQFPPLRIYFPGPADS
PSLSVSGIQASLPDMESNLSGLVPAAGLVPALP
PAVTLGLTAAYTTLYALLFFSVYAQLWLVLLYG
HKRLSYQTVFLALCLLWAALRTTLFSFYFRDTPR
ANRLGPLPFWLLYCCPVCLQFFTLTLMNLYFAQ
VVFKAKVKRRPEMSRGLLAVRGAFVGASLLFLL
VNVLCAVLSHRRRAQPWALLLVRVLVSDSLFVIC
ALSLAACLCLVARRAPSTSIYLEAKGTSVCQAA
AMGGAMVLLYASRACYNLTALALAPQSRLDTFD
YDWYNVSDQADLVNDLGNKGYLVFGLILFVWELL
PTTLLVGFFRVHRPPQDLSTSHILNGQVFASRS
YFFDRAGHCEDEGCSWEHSRGESTSMSGSLGSG
SWYGAIGREPGWYGGSQTKTTPLLFSQVPGPGGH
HHSLYSTPQT*SPSLPHRIPRPQSPSP*APVPS
LSAASCPGSWGSWLPPPLAGSLLLLS**ACAVP
LGWGAWPWLPDAHSTLA*PATSASTPEPATSPVP
ATQ*TVSAPHSC

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