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Sequence C11ORF4.jAug05
GGCTATGGGCGGAAGTTTTCTTCAGAGACCGAGGGACGGGAATCCGTTGCCGCCCCCGGCCGGGCGGCACGACCCCGATTTGGGTATAGGAGAGAGGAGCGTGGGAACTGGCGGACCCCCATACAAGTAAAGGCGGGCGGCACGGGGCACGGCCCACCCGGGGACCCCCTGGATGCGGCACGGCCCCCGCAACTCGGCCG
CCCTCCTGCCGCCTCCCGTAACCCCGGGCGCCCGCCAGCGGCGCAGCTCGCGCCAATTCTCGTACGGTTTCACGCCGGGTGCGGCGCTGGACTGCGGAGC
CAGCCGGGCCGCTGCGCAATTTGCGTAGCGAACGGCGCCCGCGCAGGCGCGGAGGGGGAGGGGGGCGGAGCAGCGGGAGCCGGGGAGCCGGAGCCCCGGG
TCCCCACGACCTGAGCCGGCTCTCCCATCAGCGGCCTGAGGACCTGGCGTCCGCCTCCTCCCTCCCCTTGAGGCTGGAGCGTGGACGCGGTGGGGGAGGG
TGGGGCGGGGGCAGCTTTCGAGAATTACGAGGACAGGAGGCAGAGGCCCTCCCCATCCGCATTATTGGAGGAGAGAGAGCCTCCCCCAGCTTGGGGAGGG
GGAGAGCGGGGCATTGGGCGCCCCTCGCAGCGGCCGCTGCCCTGACCCGACGGGTATCAGCCGGCTCTCCCCCTCCACCCAGGACGACATGAACGACCGA
GGCCAGGGAGTCCTCTCCTTGGGCCTCTGCATCCCCCCATCCTTGGCTCTGGGGTAGGCCCAGGGAGGAGACACCCCCAACCCCTATCCGGTCTGTCCTG
GAGAAAAGAGACTGCCCTTCCATGCCCCTGAGTGAGGGGCCTGGGGCCCAGGCTGCCTGTGTTCCCCAAGGGCAAGGGTCTCTCTGTTGAGGAGGAGGGG
CCTGTCAGCCACAACTTCTTTCCTCCTGAGCGCCCCATCTCCCTCTCTGCACCCTGCAATTCCCACCCCTCCGTATTTATTTCCCTGGTCCCGCCGACAG
TCCCTCCTTGTCTGTCTCCGGGATTCAGGCCTCCCTCCCTGACATGGAGAGTAACCTGTCTGGCCTGGTGCCTGCTGCCGGGCTGGTGCCTGCGCTGCCA
CCTGCTGTGACCCTGGGGCTGACAGCTGCCTACACCACCCTGTATGCCCTGCTCTTCTTCTCCGTCTATGCCCAGCTCTGGCTGGTGCTTCTGTATGGGC
ACAAGCGTCTCAGCTATCAGACGGTGTTCCTGGCCCTCTGTCTGCTCTGGGCCGCCTTGCGTACCACCCTCTTCTCCTTCTACTTCCGAGATACTCCCCG
CGCCAACCGCCTGGGGCCCTTGCCCTTCTGGCTTCTCTACTGCTGCCCCGTCTGCCTGCAGTTCTTCACCTTGACGCTTATGAACCTCTACTTTGCCCAG
GTGGTGTTCAAGGCCAAGGTGAAGCGTCGGCCGGAGATGAGCCGAGGCTTGCGGGCGCCCTCCACTAGCATCTACCTGGAGGCCAAGGGGACCAGTGTGT
GCCAGGCGGCCGC
- C11ORF4.F1 (forward primer)
- C11ORF4.R1 (reverse primer)
- Exon skipping and alternative donor or acceptor
Frame 0
GYGRKFSSETEGRESVAAPGRAARPRFGYRREERGNWRTPIQVKAGGTGHGPPGDPLDAARPPQLGR
PPAASRNPGRPPAAQLAPILVRFHAGCGAGLRS
QPGRCAICVANGARAGAEGEGGGAAGAGEPEPR
VPTT*AGSPISGLRTWRPPPPSP*GWSVDAVGEG
GAGAAFENYEDRRQRPSPSALLEEREPPPAWGG
GERGIGRPSQRPLP*PDGYQPALPLHPGRHERP
RPGSPLLGPLHPPILGSGVGPGRRHPQPLSGLSW
RKETALPCP*VRGLGPRLPVFPKGKGLSVEEEG
PVSHNFFPPERPISLSAPCNSHPSVFISLVPPT
VPPCLSPGFRPPSLTWRVTCLAWCLLPGWCLRCH
LL*PWG*QLPTPPCMPCSSSPSMPSSGWCFCMG
TSVSAIRRCSWPSVCSGPPCVPPSSPSTSEILP
APTAWGPCPSGFSTAAPSACSSSP*RL*TSTLPR
WCSRPR*SVGRR*AEACGRPPLASTWRPRGPVC
ARRP
Frame 1
AMGGSFLQRPRDGNPLPPPAGRHDPDLGIGERSVGTGGPPYK*RRAARGTAHPGTPWMRHGPRNSA
ALLPPPVTPGARQRRSSRQFSYGFTPGAALDCGA
SRAAAQFA*RTAPAQARRGRGAEQREPGSRSPG
SPRPEPALPSAA*GPGVRLLPPLEAGAWTRWGR
VGRGQLSRITRTGGRGPPHPHYWRRESLPQLGEG
ESGALGAPRSGRCPDPTGISRLSPSTQDDMNDR
GQGVLSLGLCIPPSLALG*AQGGDTPNPYPVCP
GEKRLPFHAPE*GAWGPGCLCSPRARVSLLRRRG
LSATTSFLLSAPSPSLHPAIPTPPYLFPWSRRQ
SLLVCLRDSGLPP*HGE*PVWPGACCRAGACAA
TCCDPGADSCLHHPVCPALLLRLCPALAGASVWA
QASQLSDGVPGPLSALGRLAYHPLLLLLPRYSP
RQPPGALALLASLLLPRLPAVLHLDAYEPLLCP
GGVQGQGEASAGDEPRLAGALH*HLPGGQGDQCV
PGGR
Frame 2
LWAEVFFRDRGTGIRCRPRPGGTTPIWV*ERGAWELADPHTSKGGRHGARPTRGPPGCGTAPATRP
PSCRLP*PRAPASGAARANSRTVSRRVRRWTAE
PAGPLRNLRSERRPRRRGGGGGRSSGSRGAGAPG
PHDLSRLSHQRPEDLASASSLPLRLERGRGGGG
WGGGSFRELRGQEAEALPIRIIGGERASPSLGR
GRAGHWAPLAAAAALTRRVSAGSPPPPRTT*TTE
ARESSPWASASPHPWLWGRPREETPPTPIRSVL
EKRDCPSMPLSEGPGAQAACVPQGQGSLC*GGG
ACQPQLLSS*APHLPLCTLQFPPLRIYFPGPADS
PSLSVSGIQASLPDMESNLSGLVPAAGLVPALP
PAVTLGLTAAYTTLYALLFFSVYAQLWLVLLYG
HKRLSYQTVFLALCLLWAALRTTLFSFYFRDTPR
ANRLGPLPFWLLYCCPVCLQFFTLTLMNLYFAQ
VVFKAKVKRRPEMSRGLRAPSTSIYLEAKGTSV
CQAA
Sequence C11ORF4.gAug05
TCTCCTCCACTAGCTCTGAGTGGGGCCACAGGACCACTACGCTTGCCGGACACAAGGCCCCACAGGTGGAAGAGGGAGTCTTGCTTTGTCACCCAGGCTGGAGTACAGTGATGTGATCTTGGCTCACTGCAACCTCTGCTCACCAGGCCTCCCTCCCTGACATGGAGAGTAACCTGTCTGGCCTGGTGCCTGCTGCCGGG
CTGGTGCCTGCGCTGCCACCTGCTGTGACCCTGGGGCTGACAGCTGCCTACACCACCCTGTATGCCCTGCTCTTCTTCTCCGTCTATGCCCAGCTCTGGC
TGGTGCTTCTGTATGGGCACAAGCGTCTCAGCTATCAGACGGTGTTCCTGGCCCTCTGTCTGCTCTGGGCCGCCTTGCGTACCACCCTCTTCTCCTTCTA
CTTCCGAGATACTCCCCGCGCCAACCGCCTGGGGCCCTTGCCCTTCTGGCTTCTCTACTGCTGCCCCGTCTGCCTGCAGTTCTTCACCTTGACGCTTATG
AACCTCTACTTTGCCCAGGTGGTGTTCAAGGCCAAGGTGAAGCGTCGGCCGGAGATGAGCCGAGGCTTCGGTTCTCAGGGTGTAGAGGAAGCTGGGAGCC
TTCTCTCCCTGAGGGTCCTCTGTTGTTACCTGTGCCAGGGGACCAGTGTGTGCCAGGCGGCCGC
- C11ORF4.F1 (forward primer)
- C11ORF4.R1 (reverse primer)
- Exon skipping and alternative donor or acceptor
Frame 0
SPPLALSGATGPLRLPDTRPHRWKRESCFVTQAGVQ*CDLGSLQPLLTRPPSLTWRVTCLAWCLLPG
WCLRCHLL*PWG*QLPTPPCMPCSSSPSMPSSG
WCFCMGTSVSAIRRCSWPSVCSGPPCVPPSSPS
TSEILPAPTAWGPCPSGFSTAAPSACSSSP*RL*
TSTLPRWCSRPR*SVGRR*AEASVLRV*RKLGA
FSP*GSSVVTCARGPVCARRP
Frame 1
LLH*L*VGPQDHYACRTQGPTGGRGSLALSPRLEYSDVILAHCNLCSPGLPP*HGE*PVWPGACCR
AGACAATCCDPGADSCLHHPVCPALLLRLCPALA
GASVWAQASQLSDGVPGPLSALGRLAYHPLLLL
LPRYSPRQPPGALALLASLLLPRLPAVLHLDAY
EPLLCPGGVQGQGEASAGDEPRLRFSGCRGSWEP
SLPEGPLLLPVPGDQCVPGGR
Frame 2
SSTSSEWGHRTTTLAGHKAPQVEEGVLLCHPGWSTVM*SWLTATSAHQASLPDMESNLSGLVPAAG
LVPALPPAVTLGLTAAYTTLYALLFFSVYAQLW
LVLLYGHKRLSYQTVFLALCLLWAALRTTLFSFY
FRDTPRANRLGPLPFWLLYCCPVCLQFFTLTLM
NLYFAQVVFKAKVKRRPEMSRGFGSQGVEEAGS
LLSLRVLCCYLCQGTSVCQAA
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