Back to Rnomics Platform
 Open Session
×
1 warning:
  • Access restricted to public data.
    Please sign in at Rnomics Platform to access your data.
Navigation
Home
Sequences

Sequence CCL4.cAug05

GAACATTTCATCTTTTCCTCTGGGGTTTGCAACTCTCTCCCCAGTCTCGGTCACTGCCTTTGGCTGTACCACTTCCCTTTTCTTCTCGCCTGCACCTCCC
TCATCTTTCCTCTATGATGACATCGCCCTGGGGAAGAGAAGCTGAGAGGAACTCCTCACTCAGCTAGCTTCAGGAGCATGACGTCATCTCTACCATGGAA
ATTCCACTCACTCTCCTGTGCCCCCACATTTGTCCTAGGCCTCAGAGTCCCTATAAAGAGAGATTCCCAAGTCAGTATCAGCACAGGACACAGCTGGGTT
CTGAAGCTTCTGAGTTCTGCAGCCTCACCTCTGAGAAAACCTCTTTGCCACCAATACCATGAAGCTCTGCGTGACTGTCCTGTCTCTCCTCATGCTAGTA
GCTGCCTTCTGCTCTCCAGCGCTCTCAGCACCAATGGGCTCAGACCCTCCCACCGCCTGCTGCTTTTCTTACACTGCGAGGAAGCTTCCTCGCAACTTTG
TGGTAGATTACTATGAGACCAGCAGCCTCTGCTCCCAGCCAGCTGTGATTCCAAACCAAAAGAAGCAAGCAAGTCTGTGCTGATCCCAGTGAATCCTGGG
TCCAGGAGTACGTGTATGACCTGGAACTGAACTGAGCTGCTCAGAGACAGGAAGTCTTCAGGGAAGGTCACCTGAGCCCGGATGCTTCTCCATGAGACAC
ATCTCCTCCATACTCAGGACTCCTCTCCGCAGTTCCTGTCCCTTCTCTTAATTTAATCTTTTTTATGTGCCGTGTTATTGTATTAGGTGTCATTTCCATT
ATTTATATTAGTTTAGCCAAAGGATAAGTGTCCCCTATGGGGATGGTCCACTGTCACTGTTTCTCTGCTGTTGCAAATACATGGATAACACATTTGATTC
TGTGTGTTTTCATAATAAAACTTTAAAATAAAATGCAGACAGTTTC
  • CCL4.F1 (forward primer)
  • CCL4.R1 (reverse primer)
  • Intron retention

Frame 0

EHFIFSSGVCNSLPSLGHCLWLYHFPFLLACTS
LIFPL**HRPGEEKLRGTPHSASFRSMTSSLPWK
FHSLSCAPTFVLGLRVPIKRDSQVSISTGHSWV
LKLLSSAASPLRKPLCHQYHEALRDCPVSPHAS
SCLLLSSALSTNGLRPSHRLLLFLHCEEASSQLC
GRLL*DQQPLLPASCDSKPKEASKSVLIPVNPG
SRSTCMTWN*TELLRDRKSSGKVT*ARMLLHET
HLLHTQDSSPQFLSLLLI*SFLCAVLLY*VSFPL
FILV*PKDKCPLWGWSTVTVSLLLQIHG*HI*F
CVFS**NFKIKCRQF

Frame 1

NISSFPLGFATLSPVSVTAFGCTTSLFFSPAPP
SSFLYDDIALGKRS*EELLTQLASGA*RHLYHG
NSTHSPVPPHLS*ASESL*REIPKSVSAQDTAGF
*SF*VLQPHL*ENLFATNTMKLCVTVLSLLMLV
AAFCSPALSAPMGSDPPTACCFSYTARKLPRNF
VVDYYETSSLCSQPAVIPNQKKQASLC*SQ*ILG
PGVRV*PGTELSCSETGSLQGRSPEPGCFSMRH
ISSILRTPLRSSCPFS*FNLFYVPCYCIRCHFH
YLY*FSQRISVPYGDGPLSLFLCCCKYMDNTFDS
VCFHNKTLK*NADSF

Frame 2

TFHLFLWGLQLSPQSRSLPLAVPLPFSSRLHLP
HLSSMMTSPWGREAERNSSLS*LQEHDVISTME
IPLTLLCPHICPRPQSPYKERFPSQYQHRTQLG
SEASEFCSLTSEKTSLPPIP*SSA*LSCLSSC**
LPSALQRSQHQWAQTLPPPAAFLTLRGSFLATL
W*ITMRPAASAPSQL*FQTKRSKQVCADPSESW
VQEYVYDLELN*AAQRQEVFREGHLSPDASP*DT
SPPYSGLLSAVPVPSLNLIFFMCRVIVLGVISI
IYISLAKG*VSPMGMVHCHCFSAVANTWITHLI
LCVFIIKL*NKMQTV

Sequence CCL4.shed1.aAug05

AGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGCCTCACCTCTGAGAAAACCTCTTTGCCACCAATACCATGAAGCTCTGCGTGACTGTCCTGTCTCTCCTC
ATGCTAGTAGCTGCCTTCTGCTCTCCAGCGCTCTCAGCACCAAGTAAGTCTACTTTTGCAGCTGCTATTTCGAGTCAAGGTGTAGGCAGAGTCCTTTTTT
CTAGTCATGGCTGGCAAACAGTGGGATCTGGGGATGGGACAAAAGGCAGCTAGGAAGATTGCCATGTAGTCTGCTGCTAAATGTAGAGTCTAGTAGATAT
TCAATAACATTCAAGTTCCTATTTTCTTAAGAATTAGCAACCAGCAGAGGAAAACGATGGGCTGGAAGTCAGACTGTTGAATTGGCTCTGCCTTTAATTA
TTTGTTCAAGCAAGCCCCTGTCCCTCTCTGTGCCTTGGTTTCCCCATCTGTCATATGAAGGGAGTGCGATGTGTTCTGAGACTGAATCCAGTTCCAATCT
TCTAGATTTCTTTCTCGTTCTTCTCTGAAGATCCACTATTCAAAATAAGACTCCTGCTCATGTTAGGTGGGAATGGATATTTGGGGTTCTGGTAGCTCCA
CAGGGATGCTCAATGAAGATACAAAATTAGAAGTCAAAATAAACAGCTCCCATGGGCAGTGTTGATCTCACCCTGGCCTTTCCTTTCAGTGGGCTCAGAC
CCTCCCACCGCCTGCTGCTTTTCTTACACTGCGAGGAAGCTTCCTCGCAACTTTGTGGTAGATTACTATGAGACCAGCAGCCTCTGCTCCCAGCCAGCTG
TGGTGTGAGTATCAACCCCTGGGCTGCCCTGGGAGGCAAGGGTGAGGGCTGGATTTTAAAAGAGGGCCTGTTTTGGGGAGGGGGTGATTGAGCATTGGGG
AGGCAGCTCCCAGGGCTGAAGCCTTCCCTGAGAGCAGTGAGGACACAGGTCATGAACTCACTTTTCAAGTGCTGAAGGCGGCAGAGTGGGAGCCGAGAGA
GAAGGGGGTTGCTGGGGAGGAAGTTATTCAGAGGACAGGGAAGCAGGGGAAGGCAGACAGGTCCCATGAGATATGGACCGATTCCTTAAACCGTGCTAGA
AAGACATGTGGAAAAGTCACTGCCAGGCTGGCAGGGAATGGGGAGATCTATTCATATTGATTGCAATGCCCCTTGGTTCCTAATCTGGGCAACTCCTGGG
GCCCACAGCTAAATCCAGTGGGTGGAAGTTACAGGGAGTCTGCTTCCAGTGCTGCTCCAGGAAGGATCCCATCCACCAGAGCTGCCCCACATGGACCATG
GTCAGGCAGAGGAAGATGCAAAGGATAAAGCCAGATGACCTCAAAGGTCTCATGAGATTCTAATCTGTCCGCTCCTTGTTCTACAGATTCCAAACCAAAA
GAAGCAAGCAAGTCTGTGCTGATCCCAGTGAATCCTGGGTCCAGGAGTACGTGTATGACCTGGAACTGAACTGAGCTGCTCAGAGACAGGAAGTCTTCAG
GGAAGGTCACCTGAGCCCGGATGCTTCTCCATGAGACACATCTCCTCCATACTCAGGACTCCTCTCCGCAGTTCCTGTCCCTTCTCTTAATTTAATCTTT
TTTATGTGCCGTGTTATTGTATTAGGTGTCATTTCCATTATTTATATTAGTTTAGCCAAAGGATAAGTGTCCCCTATGGGGATGGTCCACTGTCACTGTT
TCTCTGCTGTTGCAAATACATGGATAACACATTTGATTCTGTGTGTTTTCATAATAAAACTTTAAAATAAAATGCAGACAG
  • CCL4.F1 (forward primer)
  • CCL4.R1 (reverse primer)
  • Intron retention

Frame 0

SWVLKLLSSAASPLRKPLCHQYHEALRDCPVSP
HASSCLLLSSALSTK*VYFCSCYFESRCRQSPFF
*SWLANSGIWGWDKRQLGRLPCSLLLNVESSRY
SITFKFLFS*ELATSRGKRWAGSQTVELALPLI
ICSSKPLSLSVPWFPHLSYEGSAMCSETESSSNL
LDFFLVLL*RSTIQNKTPAHVRWEWIFGVLVAP
QGCSMKIQN*KSK*TAPMGSVDLTLAFPFSGLR
PSHRLLLFLHCEEASSQLCGRLL*DQQPLLPASC
GVSINPWAALGGKGEGWILKEGLFWGGGD*ALG
RQLPGLKPSLRAVRTQVMNSLFKC*RRQSGSRE
RRGLLGRKLFRGQGSRGRQTGPMRYGPIP*TVLE
RHVEKSLPGWQGMGRSIHIDCNAPWFLIWATPG
AHS*IQWVEVTGSLLPVLLQEGSHPPELPHMDH
GQAEEDAKDKAR*PQRSHEILICPLLVLQIPNQK
KQASLC*SQ*ILGPGVRV*PGTELSCSETGSLQ
GRSPEPGCFSMRHISSILRTPLRSSCPFS*FNL
FYVPCYCIRCHFHYLY*FSQRISVPYGDGPLSLF
LCCCKYMDNTFDSVCFHNKTLK*NAD

Frame 1

AGF*SF*VLQPHL*ENLFATNTMKLCVTVLSLL
MLVAAFCSPALSAPSKSTFAAAISSQGVGRVLF
SSHGWQTVGSGDGTKGS*EDCHVVCC*M*SLVDI
Q*HSSSYFLKN*QPAEENDGLEVRLLNWLCL*L
FVQASPCPSLCLGFPICHMKGVRCVLRLNPVPI
F*ISFSFFSEDPLFKIRLLLMLGGNGYLGFW*LH
RDAQ*RYKIRSQNKQLPWAVLISPWPFLSVGSD
PPTACCFSYTARKLPRNFVVDYYETSSLCSQPA
VV*VSTPGLPWEARVRAGF*KRACFGEGVIEHWG
GSSQG*SLP*EQ*GHRS*THFSSAEGGRVGAER
EGGCWGGSYSEDREAGEGRQVP*DMDRFLKPC*
KDMWKSHCQAGREWGDLFILIAMPLGS*SGQLLG
PTAKSSGWKLQGVCFQCCSRKDPIHQSCPTWTM
VRQRKMQRIKPDDLKGLMRF*SVRSLFYRFQTK
RSKQVCADPSESWVQEYVYDLELN*AAQRQEVFR
EGHLSPDASP*DTSPPYSGLLSAVPVPSLNLIF
FMCRVIVLGVISIIYISLAKG*VSPMGMVHCHC
FSAVANTWITHLILCVFIIKL*NKMQT

Frame 2

LGSEASEFCSLTSEKTSLPPIP*SSA*LSCLSS
C**LPSALQRSQHQVSLLLQLLFRVKV*AESFF
LVMAGKQWDLGMGQKAARKIAM*SAAKCRV**I
FNNIQVPIFLRISNQQRKTMGWKSDC*IGSAFNY
LFKQAPVPLCALVSPSVI*RECDVF*D*IQFQS
SRFLSRSSLKIHYSK*DSCSC*VGMDIWGSGSS
TGMLNEDTKLEVKINSSHGQC*SHPGLSFQWAQT
LPPPAAFLTLRGSFLATLW*ITMRPAASAPSQL
WCEYQPLGCPGRQG*GLDFKRGPVLGRG*LSIG
EAAPRAEAFPESSEDTGHELTFQVLKAAEWEPRE
KGVAGEEVIQRTGKQGKADRSHEIWTDSLNRAR
KTCGKVTARLAGNGEIYSY*LQCPLVPNLGNSW
GPQLNPVGGSYRESASSAAPGRIPSTRAAPHGPW
SGRGRCKG*SQMTSKVS*DSNLSAPCSTDSKPK
EASKSVLIPVNPGSRSTCMTWN*TELLRDRKSS
GKVT*ARMLLHETHLLHTQDSSPQFLSLLLI*SF
LCAVLLY*VSFPLFILV*PKDKCPLWGWSTVTV
SLLLQIHG*HI*FCVFS**NFKIKCRQ

Copyright ©2008,2017, all rights reserved.