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Sequences

Sequence CCL4.bAug05

AGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGCCTCACCTCTGAGAAAACCTCTTTGCCACCAATACCATGAAGCTCTGCGTGACTGTCCTGTCTCTCCTC
ATGCTAGTAGCTGCCTTCTGCTCTCCAGCGCTCTCAGCACCAAGTAAGTCTACTTTTGCAGCTGCTATTTCGAGTCAAGGTGTAGGCAGAGTCCTTTTTT
CTAGTCATGGCTGGCAAACAGTGGGATCTGGGGATGGGACAAAAGGCAGCTAGGAAGATTGCCATGTAGTCTGCTGCTAAATGTAGAGTCTAGTAGATAT
TCAATAACATTCAAGTTCCTATTTTCTTAAGAATTAGCAACCAGCAGAGGAAAACGATGGGCTGGAAGTCAGACTGTTGAATTGGCTCTGCCTTTAATTA
TTTGTTCAAGCAAGCCCCTGTCCCTCTCTGTGCCTTGGTTTCCCCATCTGTCATATGAAGGGAGTGCGATGTGTTCTGAGACTGAATCCAGTTCCAATCT
TCTAGATTTCTTTCTCGTTCTTCTCTGAAGATCCACTATTCAAAATAAGACTCCTGCTCATGTTAGGTGGGAATGGATATTTGGGGTTCTGGTAGCTCCA
CAGGGATGCTCAATGAAGATACAAAATTAGAAGTCAAAATAAACAGCTCCCATGGGCAGTGTTGATCTCACCCTGGCCTTTCCTTTCAGTGGGCTCAGAC
CCTCCCACCGCCTGCTGCTTTTCTTACACTGCGAGGAAGCTTCCTCGCAACTTTGTGGTAGATTACTATGAGACCAGCAGCCTCTGCTCCCAGCCAGCTG
TGGTATTCCAAACCAAAAGAAGCAAGCAAGTCTGTGCTGATCCCAGTGAATCCTGGGTCCAGGAGTACGTGTATGACCTGGAACTGAACTGAGCTGCTCA
GAGACAGGAAGTCTTCAGGGAAGGTCACCTGAGCCCGGATGCTTCTCCATGAGACACATCTCCTCCATACTCAGGACTCCTCTCCGCAGTTCCTGTCCCT
TCTCTTAATTTAATCTTTTTTATGTGCCGTGTTATTGTATTAGGTGTCATTTCCATTATTTATATTAGTTTAGCCAAAGGATAAGTGTCCCCTATGGGGA
TGGTCCACTGTCACTGTTTCTCTGCTGTTGCAAATACATGGATAACACATTTGATTCTGTGTGTTTTCATAATAAAACTTTAAAATAAAATGCAGACAGT
TTC
  • CCL4.F1 (forward primer)
  • CCL4.R1 (reverse primer)
  • Intron retention

Frame 0

SWVLKLLSSAASPLRKPLCHQYHEALRDCPVSP
HASSCLLLSSALSTK*VYFCSCYFESRCRQSPFF
*SWLANSGIWGWDKRQLGRLPCSLLLNVESSRY
SITFKFLFS*ELATSRGKRWAGSQTVELALPLI
ICSSKPLSLSVPWFPHLSYEGSAMCSETESSSNL
LDFFLVLL*RSTIQNKTPAHVRWEWIFGVLVAP
QGCSMKIQN*KSK*TAPMGSVDLTLAFPFSGLR
PSHRLLLFLHCEEASSQLCGRLL*DQQPLLPASC
GIPNQKKQASLC*SQ*ILGPGVRV*PGTELSCS
ETGSLQGRSPEPGCFSMRHISSILRTPLRSSCP
FS*FNLFYVPCYCIRCHFHYLY*FSQRISVPYGD
GPLSLFLCCCKYMDNTFDSVCFHNKTLK*NADS
F

Frame 1

AGF*SF*VLQPHL*ENLFATNTMKLCVTVLSLL
MLVAAFCSPALSAPSKSTFAAAISSQGVGRVLF
SSHGWQTVGSGDGTKGS*EDCHVVCC*M*SLVDI
Q*HSSSYFLKN*QPAEENDGLEVRLLNWLCL*L
FVQASPCPSLCLGFPICHMKGVRCVLRLNPVPI
F*ISFSFFSEDPLFKIRLLLMLGGNGYLGFW*LH
RDAQ*RYKIRSQNKQLPWAVLISPWPFLSVGSD
PPTACCFSYTARKLPRNFVVDYYETSSLCSQPA
VVFQTKRSKQVCADPSESWVQEYVYDLELN*AAQ
RQEVFREGHLSPDASP*DTSPPYSGLLSAVPVP
SLNLIFFMCRVIVLGVISIIYISLAKG*VSPMG
MVHCHCFSAVANTWITHLILCVFIIKL*NKMQTV

Frame 2

LGSEASEFCSLTSEKTSLPPIP*SSA*LSCLSS
C**LPSALQRSQHQVSLLLQLLFRVKV*AESFF
LVMAGKQWDLGMGQKAARKIAM*SAAKCRV**I
FNNIQVPIFLRISNQQRKTMGWKSDC*IGSAFNY
LFKQAPVPLCALVSPSVI*RECDVF*D*IQFQS
SRFLSRSSLKIHYSK*DSCSC*VGMDIWGSGSS
TGMLNEDTKLEVKINSSHGQC*SHPGLSFQWAQT
LPPPAAFLTLRGSFLATLW*ITMRPAASAPSQL
WYSKPKEASKSVLIPVNPGSRSTCMTWN*TELL
RDRKSSGKVT*ARMLLHETHLLHTQDSSPQFLSL
LLI*SFLCAVLLY*VSFPLFILV*PKDKCPLWG
WSTVTVSLLLQIHG*HI*FCVFS**NFKIKCRQ
F

Sequence CCL4.aAug05

GAACATTTCATCTTTTCCTCTGGGGTTTGCAACTCTCTCCCCAGTCTCGGTCACTGCCTTTGGCTGTACCACTTCCCTTTTCTTCTCGCCTGCACCTCCC
TCATCTTTCCTCTATGATGACATCGCCCTGGGGAAGAGAAGCTGAGAGGAACTCCTCACTCAGCTAGCTTCAGGAGCATGACGTCATCTCTACCATGGAA
ATTCCACTCACTCTCCTGTGCCCCCACATTTGTCCTAGGCCTCAGAGTCCCTATAAAGAGAGATTCCCAAGTCAGTATCAGCACAGGACACAGCTGGGTT
CTGAAGCTTCTGAGTTCTGCAGCCTCACCTCTGAGAAAACCTCTTTGCCACCAATACCATGAAGCTCTGCGTGACTGTCCTGTCTCTCCTCATGCTAGTA
GCTGCCTTCTGCTCTCCAGCGCTCTCAGCACCAATGGGCTCAGACCCTCCCACCGCCTGCTGCTTTTCTTACACTGCGAGGAAGCTTCCTCGCAACTTTG
TGGTAGATTACTATGAGACCAGCAGCCTCTGCTCCCAGCCAGCTGTGGTATTCCAAACCAAAAGAAGCAAGCAAGTCTGTGCTGATCCCAGTGAATCCTG
GGTCCAGGAGTACGTGTATGACCTGGAACTGAACTGAGCTGCTCAGAGACAGGAAGTCTTCAGGGAAGGTCACCTGAGCCCGGATGCTTCTCCATGAGAC
ACATCTCCTCCATACTCAGGACTCCTCTCCGCAGTTCCTGTCCCTTCTCTTAATTTAATCTTTTTTATGTGCCGTGTTATTGTATTAGGTGTCATTTCCA
TTATTTATATTAGTTTAGCCAAAGGATAAGTGTCCCCTATGGGGATGGTCCACTGTCACTGTTTCTCTGCTGTTGCAAATACATGGATAACACATTTGAT
TCTGTGTGTTTTCATAATAAAACTTTAAAATAAAATGCAGACAGTTTC
  • CCL4.F1 (forward primer)
  • CCL4.R1 (reverse primer)
  • Intron retention

Frame 0

EHFIFSSGVCNSLPSLGHCLWLYHFPFLLACTS
LIFPL**HRPGEEKLRGTPHSASFRSMTSSLPWK
FHSLSCAPTFVLGLRVPIKRDSQVSISTGHSWV
LKLLSSAASPLRKPLCHQYHEALRDCPVSPHAS
SCLLLSSALSTNGLRPSHRLLLFLHCEEASSQLC
GRLL*DQQPLLPASCGIPNQKKQASLC*SQ*IL
GPGVRV*PGTELSCSETGSLQGRSPEPGCFSMR
HISSILRTPLRSSCPFS*FNLFYVPCYCIRCHFH
YLY*FSQRISVPYGDGPLSLFLCCCKYMDNTFD
SVCFHNKTLK*NADSF

Frame 1

NISSFPLGFATLSPVSVTAFGCTTSLFFSPAPP
SSFLYDDIALGKRS*EELLTQLASGA*RHLYHG
NSTHSPVPPHLS*ASESL*REIPKSVSAQDTAGF
*SF*VLQPHL*ENLFATNTMKLCVTVLSLLMLV
AAFCSPALSAPMGSDPPTACCFSYTARKLPRNF
VVDYYETSSLCSQPAVVFQTKRSKQVCADPSESW
VQEYVYDLELN*AAQRQEVFREGHLSPDASP*D
TSPPYSGLLSAVPVPSLNLIFFMCRVIVLGVIS
IIYISLAKG*VSPMGMVHCHCFSAVANTWITHLI
LCVFIIKL*NKMQTV

Frame 2

TFHLFLWGLQLSPQSRSLPLAVPLPFSSRLHLP
HLSSMMTSPWGREAERNSSLS*LQEHDVISTME
IPLTLLCPHICPRPQSPYKERFPSQYQHRTQLG
SEASEFCSLTSEKTSLPPIP*SSA*LSCLSSC**
LPSALQRSQHQWAQTLPPPAAFLTLRGSFLATL
W*ITMRPAASAPSQLWYSKPKEASKSVLIPVNP
GSRSTCMTWN*TELLRDRKSSGKVT*ARMLLHET
HLLHTQDSSPQFLSLLLI*SFLCAVLLY*VSFP
LFILV*PKDKCPLWGWSTVTVSLLLQIHG*HI*
FCVFS**NFKIKCRQF

Sequence CCL4.shed1.aAug05

AGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGCCTCACCTCTGAGAAAACCTCTTTGCCACCAATACCATGAAGCTCTGCGTGACTGTCCTGTCTCTCCTC
ATGCTAGTAGCTGCCTTCTGCTCTCCAGCGCTCTCAGCACCAAGTAAGTCTACTTTTGCAGCTGCTATTTCGAGTCAAGGTGTAGGCAGAGTCCTTTTTT
CTAGTCATGGCTGGCAAACAGTGGGATCTGGGGATGGGACAAAAGGCAGCTAGGAAGATTGCCATGTAGTCTGCTGCTAAATGTAGAGTCTAGTAGATAT
TCAATAACATTCAAGTTCCTATTTTCTTAAGAATTAGCAACCAGCAGAGGAAAACGATGGGCTGGAAGTCAGACTGTTGAATTGGCTCTGCCTTTAATTA
TTTGTTCAAGCAAGCCCCTGTCCCTCTCTGTGCCTTGGTTTCCCCATCTGTCATATGAAGGGAGTGCGATGTGTTCTGAGACTGAATCCAGTTCCAATCT
TCTAGATTTCTTTCTCGTTCTTCTCTGAAGATCCACTATTCAAAATAAGACTCCTGCTCATGTTAGGTGGGAATGGATATTTGGGGTTCTGGTAGCTCCA
CAGGGATGCTCAATGAAGATACAAAATTAGAAGTCAAAATAAACAGCTCCCATGGGCAGTGTTGATCTCACCCTGGCCTTTCCTTTCAGTGGGCTCAGAC
CCTCCCACCGCCTGCTGCTTTTCTTACACTGCGAGGAAGCTTCCTCGCAACTTTGTGGTAGATTACTATGAGACCAGCAGCCTCTGCTCCCAGCCAGCTG
TGGTGTGAGTATCAACCCCTGGGCTGCCCTGGGAGGCAAGGGTGAGGGCTGGATTTTAAAAGAGGGCCTGTTTTGGGGAGGGGGTGATTGAGCATTGGGG
AGGCAGCTCCCAGGGCTGAAGCCTTCCCTGAGAGCAGTGAGGACACAGGTCATGAACTCACTTTTCAAGTGCTGAAGGCGGCAGAGTGGGAGCCGAGAGA
GAAGGGGGTTGCTGGGGAGGAAGTTATTCAGAGGACAGGGAAGCAGGGGAAGGCAGACAGGTCCCATGAGATATGGACCGATTCCTTAAACCGTGCTAGA
AAGACATGTGGAAAAGTCACTGCCAGGCTGGCAGGGAATGGGGAGATCTATTCATATTGATTGCAATGCCCCTTGGTTCCTAATCTGGGCAACTCCTGGG
GCCCACAGCTAAATCCAGTGGGTGGAAGTTACAGGGAGTCTGCTTCCAGTGCTGCTCCAGGAAGGATCCCATCCACCAGAGCTGCCCCACATGGACCATG
GTCAGGCAGAGGAAGATGCAAAGGATAAAGCCAGATGACCTCAAAGGTCTCATGAGATTCTAATCTGTCCGCTCCTTGTTCTACAGATTCCAAACCAAAA
GAAGCAAGCAAGTCTGTGCTGATCCCAGTGAATCCTGGGTCCAGGAGTACGTGTATGACCTGGAACTGAACTGAGCTGCTCAGAGACAGGAAGTCTTCAG
GGAAGGTCACCTGAGCCCGGATGCTTCTCCATGAGACACATCTCCTCCATACTCAGGACTCCTCTCCGCAGTTCCTGTCCCTTCTCTTAATTTAATCTTT
TTTATGTGCCGTGTTATTGTATTAGGTGTCATTTCCATTATTTATATTAGTTTAGCCAAAGGATAAGTGTCCCCTATGGGGATGGTCCACTGTCACTGTT
TCTCTGCTGTTGCAAATACATGGATAACACATTTGATTCTGTGTGTTTTCATAATAAAACTTTAAAATAAAATGCAGACAG
  • CCL4.F1 (forward primer)
  • CCL4.R1 (reverse primer)
  • Intron retention

Frame 0

SWVLKLLSSAASPLRKPLCHQYHEALRDCPVSP
HASSCLLLSSALSTK*VYFCSCYFESRCRQSPFF
*SWLANSGIWGWDKRQLGRLPCSLLLNVESSRY
SITFKFLFS*ELATSRGKRWAGSQTVELALPLI
ICSSKPLSLSVPWFPHLSYEGSAMCSETESSSNL
LDFFLVLL*RSTIQNKTPAHVRWEWIFGVLVAP
QGCSMKIQN*KSK*TAPMGSVDLTLAFPFSGLR
PSHRLLLFLHCEEASSQLCGRLL*DQQPLLPASC
GVSINPWAALGGKGEGWILKEGLFWGGGD*ALG
RQLPGLKPSLRAVRTQVMNSLFKC*RRQSGSRE
RRGLLGRKLFRGQGSRGRQTGPMRYGPIP*TVLE
RHVEKSLPGWQGMGRSIHIDCNAPWFLIWATPG
AHS*IQWVEVTGSLLPVLLQEGSHPPELPHMDH
GQAEEDAKDKAR*PQRSHEILICPLLVLQIPNQK
KQASLC*SQ*ILGPGVRV*PGTELSCSETGSLQ
GRSPEPGCFSMRHISSILRTPLRSSCPFS*FNL
FYVPCYCIRCHFHYLY*FSQRISVPYGDGPLSLF
LCCCKYMDNTFDSVCFHNKTLK*NAD

Frame 1

AGF*SF*VLQPHL*ENLFATNTMKLCVTVLSLL
MLVAAFCSPALSAPSKSTFAAAISSQGVGRVLF
SSHGWQTVGSGDGTKGS*EDCHVVCC*M*SLVDI
Q*HSSSYFLKN*QPAEENDGLEVRLLNWLCL*L
FVQASPCPSLCLGFPICHMKGVRCVLRLNPVPI
F*ISFSFFSEDPLFKIRLLLMLGGNGYLGFW*LH
RDAQ*RYKIRSQNKQLPWAVLISPWPFLSVGSD
PPTACCFSYTARKLPRNFVVDYYETSSLCSQPA
VV*VSTPGLPWEARVRAGF*KRACFGEGVIEHWG
GSSQG*SLP*EQ*GHRS*THFSSAEGGRVGAER
EGGCWGGSYSEDREAGEGRQVP*DMDRFLKPC*
KDMWKSHCQAGREWGDLFILIAMPLGS*SGQLLG
PTAKSSGWKLQGVCFQCCSRKDPIHQSCPTWTM
VRQRKMQRIKPDDLKGLMRF*SVRSLFYRFQTK
RSKQVCADPSESWVQEYVYDLELN*AAQRQEVFR
EGHLSPDASP*DTSPPYSGLLSAVPVPSLNLIF
FMCRVIVLGVISIIYISLAKG*VSPMGMVHCHC
FSAVANTWITHLILCVFIIKL*NKMQT

Frame 2

LGSEASEFCSLTSEKTSLPPIP*SSA*LSCLSS
C**LPSALQRSQHQVSLLLQLLFRVKV*AESFF
LVMAGKQWDLGMGQKAARKIAM*SAAKCRV**I
FNNIQVPIFLRISNQQRKTMGWKSDC*IGSAFNY
LFKQAPVPLCALVSPSVI*RECDVF*D*IQFQS
SRFLSRSSLKIHYSK*DSCSC*VGMDIWGSGSS
TGMLNEDTKLEVKINSSHGQC*SHPGLSFQWAQT
LPPPAAFLTLRGSFLATLW*ITMRPAASAPSQL
WCEYQPLGCPGRQG*GLDFKRGPVLGRG*LSIG
EAAPRAEAFPESSEDTGHELTFQVLKAAEWEPRE
KGVAGEEVIQRTGKQGKADRSHEIWTDSLNRAR
KTCGKVTARLAGNGEIYSY*LQCPLVPNLGNSW
GPQLNPVGGSYRESASSAAPGRIPSTRAAPHGPW
SGRGRCKG*SQMTSKVS*DSNLSAPCSTDSKPK
EASKSVLIPVNPGSRSTCMTWN*TELLRDRKSS
GKVT*ARMLLHETHLLHTQDSSPQFLSLLLI*SF
LCAVLLY*VSFPLFILV*PKDKCPLWGWSTVTV
SLLLQIHG*HI*FCVFS**NFKIKCRQ

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