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Sequence NM_016082
CGGAAGTCGCTTGTGTATGAACGCAGCGGCGGACCTGTGAGGGGATCCGACTTGCCGGCAGAACTTACGCTGCGGGACCCCGGGCACTGTTGCTGCTGCGGGAGTCCAGAGAGGCAGGAGGATGGAGCTCGGAAGGATTTCAGCTCCAGGCTGGCTGCTGGACCGACTTTTCAACATTTTTTAAAAAGTGCCTCAGCTCC
TCAGGAGAAGCTGTCTTCAGAAGTGGAAGACCCACCTCCCTATCTCATGATGGATGAACTTCTTGGAAGGCAGAGAAAAGTCTACCTCGAGACCTATGGC
TGCCAGATGAATGTGAATGACACAGAGATAGCCTGGTCCATCTTACAGAAGAGTGGCTACCTGCGGACCAGTAACCTCCAAGAGGCAGATGTGATTCTCC
TTGTCACATGCTCTATCAGGGAGAAGGCTGAGCAGACCATCTGGAACCGTTTACATCAGCTTAAAGCCTTGAAGACAAGGCGGCCCCGCTCCCGGGTTCC
TCTGAGGATTGGAATTCTAGGCTGCATGGCTGAGAGGTTGAAGGAGGAGATTCTCAACAGAGAGAAAATGGTAGATATTTTGGCTGGTCCTGATGCCTAC
CGGGACCTTCCCCGGCTGCTGGCTGTTGCTGAGTCGGGCCAGCAAGCTGCCAACGTGCTGCTCTCTCTGGACGAGACCTATGCTGATGTCATGCCAGTCC
AGACAAGCGCCAGTGCCACGTCTGCCTTTGTGTCAATCATGCGAGGCTGTGACAACATGTGTAGCTACTGCATTGTTCCTTTCACCCGGGGCAGGGAGAG
GAGTCGGCCTATTGCCTCCATTCTAGAGGAAGTGAAGAAGCTTTCTGAGCAGGGGCTGAAAGAAGTGACACTTCTTGGTCAGAATGTTAATAGTTTTCGG
GACAATTCGGAGGTCCAGTTCAACAGTGCAGTGCCTACCAATCTCAGTCGTGGCTTTACCACCAACTATAAAACCAAGCAAGGAGGACTTCGTTTTGCTC
ATCTTCTGGATCAGGTCTCCAGAGTAGATCCTGAAATGAGGATCCGTTTTACCTCTCCCCACCCCAAGGATTTTCCTGATGAGGTTCTGCAGCTGATTCA
TGAGAGAGATAACATCTGTAAACAGATCCACCTGCCAGCCCAGAGTGGAAGCAGCCGTGTGTTGGAGGCCATGCGGAGGGGATATTCAAGAGAAGCTTAT
GTGGAGTTAGTTCACCATATTAGAGAATCTATTCCAGGTGTGAGCCTCAGCAGCGATTTCATTGCTGGCTTTTGTGGTGAGACGGAGGAAGATCACGTCC
AGACAGTCTCTTTGCTCCGGGAAGTTCAGTACAACATGGGCTTCCTCTTTGCCTACAGCATGAGACAGAAGACACGGGCATATCATAGGCTGAAGGATGA
TGTCCCGGAAGAGGTAAAATTAAGGCGTTTGGAGGAACTCATCACTATCTTCCGAGAAGAAGCAACAAAAGCCAATCAGACCTCTGTGGGCTGTACCCAG
TTGGTGCTAGTGGAAGGGCTCAGTAAACGCTCTGCCACTGACCTGTGTGGCAGGAATGATGGAAACCTTAAGGTGATCTTCCCTGATGCAGAGATGGAGG
ATGTCAATAACCCTGGGCTCAGGGTCAGAGCCCAGCCTGGGGACTATGTGCTGGTGAAGATCACCTCAGCCAGTTCTCAGACACTTAGGGGACATGTTCT
CTGCAGGACCACTCTGAGGGACTCTTCTGCATATTGCTGACCTGAGAGGATGGCCTCAGAGCTGACTTGGGCAATCCTCCCCAACAGGAAGGGGAGACAT
TGCCTGCCACTGAGGAAACAGGTCATGAAGGTGGAGATAAGCTGCAAGGGGCGAAGCAACTTTATGTCAGTGGAAAACGTGTCTCTTTAAAGCTGCTATG
TGAACAGCTTTTACAGTCATTAAATTTACCTAAACTAAGGTTAA
- refseq_CDK5RAP1.F2 (forward primer)
- refseq_CDK5RAP1.R2 (reverse primer)
- Alternative acceptor
Frame 0
RKSLVYERSGGPVRGSDLPAELTLRDPGHCCCCGSPERQEDGARKDFSSRLAAGPTFQHFLKSASAP
QEKLSSEVEDPPPYLMMDELLGRQRKVYLETYG
CQMNVNDTEIAWSILQKSGYLRTSNLQEADVIL
LVTCSIREKAEQTIWNRLHQLKALKTRRPRSRVP
LRIGILGCMAERLKEEILNREKMVDILAGPDAY
RDLPRLLAVAESGQQAANVLLSLDETYADVMPV
QTSASATSAFVSIMRGCDNMCSYCIVPFTRGRER
SRPIASILEEVKKLSEQGLKEVTLLGQNVNSFR
DNSEVQFNSAVPTNLSRGFTTNYKTKQGGLRFA
HLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIH
ERDNICKQIHLPAQSGSSRVLEAMRRGYSREAY
VELVHHIRESIPGVSLSSDFIAGFCGETEEDHV
QTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDD
VPEEVKLRRLEELITIFREEATKANQTSVGCTQ
LVLVEGLSKRSATDLCGRNDGNLKVIFPDAEME
DVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVL
CRTTLRDSSAYC*PERMASELTWAILPNRKGRH
CLPLRKQVMKVEISCKGRSNFMSVENVSL*SCY
VNSFYSH*IYLN*G*
Frame 1
GSRLCMNAAADL*GDPTCRQNLRCGTPGTVAAAGVQRGRRMELGRISAPGWLLDRLFNIF*KVPQL
LRRSCLQKWKTHLPIS*WMNFLEGREKSTSRPMA
AR*M*MTQR*PGPSYRRVATCGPVTSKRQM*FS
LSHALSGRRLSRPSGTVYISLKP*RQGGPAPGF
L*GLEF*AAWLRG*RRRFSTERKW*IFWLVLMPT
GTFPGCWLLLSRASKLPTCCSLWTRPMLMSCQS
RQAPVPRLPLCQSCEAVTTCVATALFLSPGAGR
GVGLLPPF*RK*RSFLSRG*KK*HFLVRMLIVFG
TIRRSSSTVQCLPISVVALPPTIKPSKEDFVLL
IFWIRSPE*ILK*GSVLPLPTPRIFLMRFCS*F
MREITSVNRSTCQPRVEAAVCWRPCGGDIQEKLM
WS*FTILENLFQV*ASAAISLLAFVVRRRKITS
RQSLCSGKFSTTWASSLPTA*DRRHGHIIG*RM
MSRKR*N*GVWRNSSLSSEKKQQKPIRPLWAVPS
WC*WKGSVNALPLTCVAGMMETLR*SSLMQRWR
MSITLGSGSEPSLGTMCW*RSPQPVLRHLGDMF
SAGPL*GTLLHIADLRGWPQS*LGQSSPTGRGDI
ACH*GNRS*RWR*AARGEATLCQWKTCLFKAAM
*TAFTVIKFT*TKV
Frame 2
EVACV*TQRRTCEGIRLAGRTYAAGPRALLLLRESREAGGWSSEGFQLQAGCWTDFSTFFKKCLSS
SGEAVFRSGRPTSLSHDG*TSWKAEKSLPRDLW
LPDECE*HRDSLVHLTEEWLPADQ*PPRGRCDSP
CHMLYQGEG*ADHLEPFTSA*SLEDKAAPLPGS
SEDWNSRLHG*EVEGGDSQQRENGRYFGWS*CL
PGPSPAAGCC*VGPASCQRAALSGRDLC*CHASP
DKRQCHVCLCVNHARL*QHV*LLHCSFHPGQGE
ESAYCLHSRGSEEAF*AGAERSDTSWSEC**FS
GQFGGPVQQCSAYQSQSWLYHQL*NQARRTSFCS
SSGSGLQSRS*NEDPFYLSPPQGFS**GSAADS
*ER*HL*TDPPASPEWKQPCVGGHAEGIFKRSL
CGVSSPY*RIYSRCEPQQRFHCWLLW*DGGRSRP
DSLFAPGSSVQHGLPLCLQHETEDTGIS*AEG*
CPGRGKIKAFGGTHHYLPRRSNKSQSDLCGLYP
VGASGRAQ*TLCH*PVWQE*WKP*GDLP*CRDGG
CQ*PWAQGQSPAWGLCAGEDHLSQFSDT*GTCS
LQDHSEGLFCILLT*EDGLRADLGNPPQQEGET
LPATEETGHEGGDKLQGAKQLYVSGKRVSLKLLC
EQLLQSLNLPKLRL
Sequence NM_016408
CGGAAGTCGCTTGTGTATGAACGCAGCGGCGGACCTGTGAGGGGATCCGACTTGCCGGCAGAACTTACGCTGCGGGACCCCGGGCACTGTTGCTGCTGCGGGAGACTGTGGGCTGTTTAGTGCCATGCACCCTTTACAGTGTGTCCTCCAAGTGCAGAGGTCTCTGGGGTGGGGACCATTGGCCTCTGTGTCTTGGCTGT
CGCTGAGGATGTGCAGGGCACACAGCAGTCTCTCTAGTACCATGTGTCCCAGTCCAGAGAGGCAGGAGGATGGAGCTCGGAAGGATTTCAGCTCCAGGCT
GGCTGCTGGACCGACTTTTCAACATTTTTTAAAAAGTGCCTCAGCTCCTCAGGAGAAGCTGTCTTCAGAAGTGGAAGACCCACCTCCCTATCTCATGATG
GATGAACTTCTTGGAAGGCAGAGAAAAGTCTACCTCGAGACCTATGGCTGCCAGATGAATGTGAATGACACAGAGATAGCCTGGTCCATCTTACAGAAGA
GTGGCTACCTGCGGACCAGTAACCTCCAAGAGGCAGATGTGATTCTCCTTGTCACATGCTCTATCAGGGAGAAGGCTGAGCAGACCATCTGGAACCGTTT
ACATCAGCTTAAAGCCTTGAAGACAAGGCGGCCCCGCTCCCGGGTTCCTCTGAGGATTGGAATTCTAGGCTGCATGGCTGAGAGGTTGAAGGAGGAGATT
CTCAACAGAGAGAAAATGGTAGATATTTTGGCTGGTCCTGATGCCTACCGGGACCTTCCCCGGCTGCTGGCTGTTGCTGAGTCGGGCCAGCAAGCTGCCA
ACGTGCTGCTCTCTCTGGACGAGACCTATGCTGATGTCATGCCAGTCCAGACAAGCGCCAGTGCCACGTCTGCCTTTGTGTCAATCATGCGAGGCTGTGA
CAACATGTGTAGCTACTGCATTGTTCCTTTCACCCGGGGCAGGGAGAGGAGTCGGCCTATTGCCTCCATTCTAGAGGAAGTGAAGAAGCTTTCTGAGCAG
GGGCTGAAAGAAGTGACACTTCTTGGTCAGAATGTTAATAGTTTTCGGGACAATTCGGAGGTCCAGTTCAACAGTGCAGTGCCTACCAATCTCAGTCGTG
GCTTTACCACCAACTATAAAACCAAGCAAGGAGGACTTCGTTTTGCTCATCTTCTGGATCAGGTCTCCAGAGTAGATCCTGAAATGAGGATCCGTTTTAC
CTCTCCCCACCCCAAGGATTTTCCTGATGAGGTTCTGCAGCTGATTCATGAGAGAGATAACATCTGTAAACAGATCCACCTGCCAGCCCAGAGTGGAAGC
AGCCGTGTGTTGGAGGCCATGCGGAGGGGATATTCAAGAGAAGCTTATGTGGAGTTAGTTCACCATATTAGAGAATCTATTCCAGGTGTGAGCCTCAGCA
GCGATTTCATTGCTGGCTTTTGTGGTGAGACGGAGGAAGATCACGTCCAGACAGTCTCTTTGCTCCGGGAAGTTCAGTACAACATGGGCTTCCTCTTTGC
CTACAGCATGAGACAGAAGACACGGGCATATCATAGGCTGAAGGATGATGTCCCGGAAGAGGTAAAATTAAGGCGTTTGGAGGAACTCATCACTATCTTC
CGAGAAGAAGCAACAAAAGCCAATCAGACCTCTGTGGGCTGTACCCAGTTGGTGCTAGTGGAAGGGCTCAGTAAACGCTCTGCCACTGACCTGTGTGGCA
GGAATGATGGAAACCTTAAGGTGATCTTCCCTGATGCAGAGATGGAGGATGTCAATAACCCTGGGCTCAGGGTCAGAGCCCAGCCTGGGGACTATGTGCT
GGTGAAGATCACCTCAGCCAGTTCTCAGACACTTAGGGGACATGTTCTCTGCAGGACCACTCTGAGGGACTCTTCTGCATATTGCTGACCTGAGAGGATG
GCCTCAGAGCTGACTTGGGCAATCCTCCCCAACAGGAAGGGGAGACATTGCCTGCCACTGAGGAAACAGGTCATGAAGGTGGAGATAAGCTGCAAGGGGC
GAAGCAACTTTATGTCAGTGGAAAACGTGTCTCTTTAAAGCTGCTATGTGAACAGCTTTTACAGTCATTAAATTTACCTAAACTAAGGTTAA
- refseq_CDK5RAP1.F2 (forward primer)
- refseq_CDK5RAP1.R2 (reverse primer)
- Alternative acceptor
Frame 0
RKSLVYERSGGPVRGSDLPAELTLRDPGHCCCCGRLWAV*CHAPFTVCPPSAEVSGVGTIGLCVLAV
AEDVQGTQQSL*YHVSQSREAGGWSSEGFQLQA
GCWTDFSTFFKKCLSSSGEAVFRSGRPTSLSHD
G*TSWKAEKSLPRDLWLPDECE*HRDSLVHLTEE
WLPADQ*PPRGRCDSPCHMLYQGEG*ADHLEPF
TSA*SLEDKAAPLPGSSEDWNSRLHG*EVEGGD
SQQRENGRYFGWS*CLPGPSPAAGCC*VGPASCQ
RAALSGRDLC*CHASPDKRQCHVCLCVNHARL*
QHV*LLHCSFHPGQGEESAYCLHSRGSEEAF*A
GAERSDTSWSEC**FSGQFGGPVQQCSAYQSQSW
LYHQL*NQARRTSFCSSSGSGLQSRS*NEDPFY
LSPPQGFS**GSAADS*ER*HL*TDPPASPEWK
QPCVGGHAEGIFKRSLCGVSSPY*RIYSRCEPQQ
RFHCWLLW*DGGRSRPDSLFAPGSSVQHGLPLC
LQHETEDTGIS*AEG*CPGRGKIKAFGGTHHYL
PRRSNKSQSDLCGLYPVGASGRAQ*TLCH*PVWQ
E*WKP*GDLP*CRDGGCQ*PWAQGQSPAWGLCA
GEDHLSQFSDT*GTCSLQDHSEGLFCILLT*ED
GLRADLGNPPQQEGETLPATEETGHEGGDKLQGA
KQLYVSGKRVSLKLLCEQLLQSLNLPKLRL
Frame 1
GSRLCMNAAADL*GDPTCRQNLRCGTPGTVAAAGDCGLFSAMHPLQCVLQVQRSLGWGPLASVSWL
SLRMCRAHSSLSSTMCPSPERQEDGARKDFSSRL
AAGPTFQHFLKSASAPQEKLSSEVEDPPPYLMM
DELLGRQRKVYLETYGCQMNVNDTEIAWSILQK
SGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL
HQLKALKTRRPRSRVPLRIGILGCMAERLKEEI
LNREKMVDILAGPDAYRDLPRLLAVAESGQQAA
NVLLSLDETYADVMPVQTSASATSAFVSIMRGCD
NMCSYCIVPFTRGRERSRPIASILEEVKKLSEQ
GLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSR
GFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFT
SPHPKDFPDEVLQLIHERDNICKQIHLPAQSGS
SRVLEAMRRGYSREAYVELVHHIRESIPGVSLS
SDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFA
YSMRQKTRAYHRLKDDVPEEVKLRRLEELITIF
REEATKANQTSVGCTQLVLVEGLSKRSATDLCG
RNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVL
VKITSASSQTLRGHVLCRTTLRDSSAYC*PERM
ASELTWAILPNRKGRHCLPLRKQVMKVEISCKG
RSNFMSVENVSL*SCYVNSFYSH*IYLN*G*
Frame 2
EVACV*TQRRTCEGIRLAGRTYAAGPRALLLLRETVGCLVPCTLYSVSSKCRGLWGGDHWPLCLGC
R*GCAGHTAVSLVPCVPVQRGRRMELGRISAPG
WLLDRLFNIF*KVPQLLRRSCLQKWKTHLPIS*W
MNFLEGREKSTSRPMAAR*M*MTQR*PGPSYRR
VATCGPVTSKRQM*FSLSHALSGRRLSRPSGTV
YISLKP*RQGGPAPGFL*GLEF*AAWLRG*RRRF
STERKW*IFWLVLMPTGTFPGCWLLLSRASKLP
TCCSLWTRPMLMSCQSRQAPVPRLPLCQSCEAV
TTCVATALFLSPGAGRGVGLLPPF*RK*RSFLSR
G*KK*HFLVRMLIVFGTIRRSSSTVQCLPISVV
ALPPTIKPSKEDFVLLIFWIRSPE*ILK*GSVL
PLPTPRIFLMRFCS*FMREITSVNRSTCQPRVEA
AVCWRPCGGDIQEKLMWS*FTILENLFQV*ASA
AISLLAFVVRRRKITSRQSLCSGKFSTTWASSL
PTA*DRRHGHIIG*RMMSRKR*N*GVWRNSSLSS
EKKQQKPIRPLWAVPSWC*WKGSVNALPLTCVA
GMMETLR*SSLMQRWRMSITLGSGSEPSLGTMC
W*RSPQPVLRHLGDMFSAGPL*GTLLHIADLRGW
PQS*LGQSSPTGRGDIACH*GNRS*RWR*AARG
EATLCQWKTCLFKAAM*TAFTVIKFT*TKV
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