Sequences - Rnomics 📊 Palace

        ☰
    
        Rnomics 📊 Palace
    
                       Back to Rnomics Platform
            
                       Open Session

1 warning:

Access restricted to public data.
Please sign in at Rnomics Platform to access your data.

Navigation

Home

Sequences

Sequence NM_001001887

GTAACTGAAAATCCACAAGACAGAATAGCCAGATCTCAGAGGAGCCTGGCTAAGCAAAACCCTGCAGAACGGCTGCCTAATTTACAGCAACCATGAGTAC AAATGGTGATGATCATCAGGTCAAGGATAGTCTGGAGCAATTGAGATGTCACTTTACATGGGAGTTATCCATTGATGACGATGAAATGCCTGATTTAGAA AACAGAGTCTTGGATCAGATTGAATTCCTAGACACCAAATACAGTGTGGGAATACACAACCTACTAGCCTATGTGAAACACCTGAAAGGCCAGAATGAGG AAGCCCTGAAGAGCTTAAAAGAAGCTGAAAACTTAATGCAGGAAGAACATGACAACCAAGCAAATGTGAGGAGTCTGGTGACCTGGGGCAACTTTGCCTG GATGTATTACCACATGGGCAGACTGGCAGAAGCCCAGACTTACCTGGACAAGGTGGAGAACATTTGCAAGAAGCTTTCAAATCCCTTCCGCTATAGAATG GAGTGTCCAGAAATAGACTGTGAGGAAGGATGGGCCTTGCTGAAGTGTGGAGGAAAAAATTATGAACGGGCCAAGGCCTGCTTTGAAAAGGTGCTTGAAG TGGACCCTGAAAACCCTGAATCCAGCGCTGGGTATGCGATCTCTGCCTATCGCCTGGATGGCTTTAAATTAGCCACAAAAAATCACAAGCCATTTTCTTT GCTTCCCCTAAGGCAGGCTGTCCGCTTAAATCCAGACAATGGATATATTAAGGTTCTCCTTGCCCTGAAGCTTCAGGATGAAGGACAGGAAGCTGAAGGA GAAAAGTACATTGAAGAAGCTCTAGCCAACATGTCCTCACAGACCTATGTCTTTCGATATGCAGCCAAGTTTTACCGAAGAAAAGGCTCTGTGGATAAAG CTCTTGAGTTATTAAAAAAGGCCTTGCAGGAAACACCCACTTCTGTCTTACTGCATCACCAGATAGGGCTTTGCTACAAGGCACAAATGATCCAAATCAA GGAGGCTACAAAAGGGCAGCCTAGAGGGCAGAACAGAGAAAAGCTAGACAAAATGATAAGATCAGCCATATTTCATTTTGAATCTGCAGTGGAAAAAAAG CCCACATTTGAGGTGGCTCATCTAGACCTGGCAAGAATGTATATAGAAGCAGGCAATCACAGAAAAGCTGAAGAGAATTTTCAAAAATTGTTATGCATGA AACCAGTGGTAGAAGAAACAATGCAAGACATACATTTCCACTATGGTCGGTTTCAGGAATTTCAAAAGAAATCTGACGTCAATGCAATTATCCATTATTT AAAAGCTATAAAAATAGAACAGGCATCATTAACAAGGGATAAAAGTATCAATTCTTTGAAGAAATTGGTTTTAAGGAAACTTCGGAGAAAGGCATTAGAT CTGGAAAGCTTGAGCCTCCTTGGGTTCGTCTACAAATTGGAAGGAAATATGAATGAAGCCCTGGAGTACTATGAGCGGGCCCTGAGACTGGCTGCTGACT TTGAGAACTCTGTGAGACAAGGTCCTTAGGCACCCAGATATCAGCCACTTTCACATTTCATTTCATTTTATGCTAACATTTACTAATCATCTTTTCTGCT TACTGTTTTCAGAAACATTATAATTCACTGTAATGATGTAATTCTTGAATAATAAATCTGACAAAA

refseq_IFIT1.F2 (forward primer)
refseq_IFIT1.R2 (reverse primer)
Single exon skipping

Frame 0

VTENPQDRIARSQRSLAKQNPAERLPNLQQP*V QMVMIIRSRIVWSN*DVTLHGSYPLMTMKCLI*K TESWIRLNS*TPNTVWEYTTY*PM*NT*KARMR KP*RA*KKLKT*CRKNMTTKQM*GVW*PGATLP GCITTWADWQKPRLTWTRWRTFARSFQIPSAIEW SVQK*TVRKDGPC*SVEEKIMNGPRPALKRCLK WTLKTLNPALGMRSLPIAWMALN*PQKITSHFL CFP*GRLSA*IQTMDILRFSLP*SFRMKDRKLKE KSTLKKL*PTCPHRPMSFDMQPSFTEEKALWIK LLSY*KRPCRKHPLLSYCITR*GFATRHK*SKS RRLQKGSLEGRTEKS*TK**DQPYFILNLQWKKS PHLRWLI*TWQECI*KQAITEKLKRIFKNCYA* NQW*KKQCKTYISTMVGFRNFKRNLTSMQLSII *KL*K*NRHH*QGIKVSIL*RNWF*GNFGERH*I WKA*ASLGSSTNWKEI*MKPWSTMSGP*DWLLT LRTL*DKVLRHPDISHFHISFHFMLTFTNHLFC LLFSETL*FTVMM*FLNNKSDK

Frame 1

*LKIHKTE*PDLRGAWLSKTLQNGCLIYSNHEY KW**SSGQG*SGAIEMSLYMGVIH**R*NA*FR KQSLGSD*IPRHQIQCGNTQPTSLCETPERPE*G SPEELKRS*KLNAGRT*QPSKCEESGDLGQLCL DVLPHGQTGRSPDLPGQGGEHLQEAFKSLPL*N GVSRNRL*GRMGLAEVWRKKL*TGQGLL*KGA*S GP*KP*IQRWVCDLCLSPGWL*ISHKKSQAIFF ASPKAGCPLKSRQWIY*GSPCPEASG*RTGS*R RKVH*RSSSQHVLTDLCLSICSQVLPKKRLCG*S S*VIKKGLAGNTHFCLTASPDRALLQGTNDPNQ GGYKRAA*RAEQRKARQNDKISHISF*ICSGKK AHI*GGSSRPGKNVYRSRQSQKS*REFSKIVMHE TSGRRNNARHTFPLWSVSGISKEI*RQCNYPLF KSYKNRTGIINKG*KYQFFEEIGFKETSEKGIR SGKLEPPWVRLQIGRKYE*SPGVL*AGPETGC*L *ELCETRSLGTQISATFTFHFILC*HLLIIFSA YCFQKHYNSL**CNS*IINLTK

Frame 2

N*KSTRQNSQISEEPG*AKPCRTAA*FTATMST NGDDHQVKDSLEQLRCHFTWELSIDDDEMPDLE NRVLDQIEFLDTKYSVGIHNLLAYVKHLKGQNE EALKSLKEAENLMQEEHDNQANVRSLVTWGNFAW MYYHMGRLAEAQTYLDKVENICKKLSNPFRYRM ECPEIDCEEGWALLKCGGKNYERAKACFEKVLE VDPENPESSAGYAISAYRLDGFKLATKNHKPFSL LPLRQAVRLNPDNGYIKVLLALKLQDEGQEAEG EKYIEEALANMSSQTYVFRYAAKFYRRKGSVDK ALELLKKALQETPTSVLLHHQIGLCYKAQMIQIK EATKGQPRGQNREKLDKMIRSAIFHFESAVEKK PTFEVAHLDLARMYIEAGNHRKAEENFQKLLCM KPVVEETMQDIHFHYGRFQEFQKKSDVNAIIHYL KAIKIEQASLTRDKSINSLKKLVLRKLRRKALD LESLSLLGFVYKLEGNMNEALEYYERALRLAAD FENSVRQGP*APRYQPLSHFISFYANIY*SSFLL TVFRNIIIHCNDVILE**I*Q

Sequence NM_001548

GTAACTGAAAATCCACAAGACAGAATAGCCAGATCTCAGAGGAGCCTGGCTAAGCAAAACCCTGCAGAACGGCTGCCTAATTTACAGCAACCATGAGGCC ACTTAAGGATGCAGCAAGAAGGAGCCATCTGCAATCCAGGAAGAAATTCCTTGCCAGGAACCAAATTGGTTGTCACCTTCATCTAGGACTTCTAGCCTCG AGAACTTACAAATGGTGATGATCATCAGGTCAAGGATAGTCTGGAGCAATTGAGATGTCACTTTACATGGGAGTTATCCATTGATGACGATGAAATGCCT GATTTAGAAAACAGAGTCTTGGATCAGATTGAATTCCTAGACACCAAATACAGTGTGGGAATACACAACCTACTAGCCTATGTGAAACACCTGAAAGGCC AGAATGAGGAAGCCCTGAAGAGCTTAAAAGAAGCTGAAAACTTAATGCAGGAAGAACATGACAACCAAGCAAATGTGAGGAGTCTGGTGACCTGGGGCAA CTTTGCCTGGATGTATTACCACATGGGCAGACTGGCAGAAGCCCAGACTTACCTGGACAAGGTGGAGAACATTTGCAAGAAGCTTTCAAATCCCTTCCGC TATAGAATGGAGTGTCCAGAAATAGACTGTGAGGAAGGATGGGCCTTGCTGAAGTGTGGAGGAAAAAATTATGAACGGGCCAAGGCCTGCTTTGAAAAGG TGCTTGAAGTGGACCCTGAAAACCCTGAATCCAGCGCTGGGTATGCGATCTCTGCCTATCGCCTGGATGGCTTTAAATTAGCCACAAAAAATCACAAGCC ATTTTCTTTGCTTCCCCTAAGGCAGGCTGTCCGCTTAAATCCAGACAATGGATATATTAAGGTTCTCCTTGCCCTGAAGCTTCAGGATGAAGGACAGGAA GCTGAAGGAGAAAAGTACATTGAAGAAGCTCTAGCCAACATGTCCTCACAGACCTATGTCTTTCGATATGCAGCCAAGTTTTACCGAAGAAAAGGCTCTG TGGATAAAGCTCTTGAGTTATTAAAAAAGGCCTTGCAGGAAACACCCACTTCTGTCTTACTGCATCACCAGATAGGGCTTTGCTACAAGGCACAAATGAT CCAAATCAAGGAGGCTACAAAAGGGCAGCCTAGAGGGCAGAACAGAGAAAAGCTAGACAAAATGATAAGATCAGCCATATTTCATTTTGAATCTGCAGTG GAAAAAAAGCCCACATTTGAGGTGGCTCATCTAGACCTGGCAAGAATGTATATAGAAGCAGGCAATCACAGAAAAGCTGAAGAGAATTTTCAAAAATTGT TATGCATGAAACCAGTGGTAGAAGAAACAATGCAAGACATACATTTCCACTATGGTCGGTTTCAGGAATTTCAAAAGAAATCTGACGTCAATGCAATTAT CCATTATTTAAAAGCTATAAAAATAGAACAGGCATCATTAACAAGGGATAAAAGTATCAATTCTTTGAAGAAATTGGTTTTAAGGAAACTTCGGAGAAAG GCATTAGATCTGGAAAGCTTGAGCCTCCTTGGGTTCGTCTACAAATTGGAAGGAAATATGAATGAAGCCCTGGAGTACTATGAGCGGGCCCTGAGACTGG CTGCTGACTTTGAGAACTCTGTGAGACAAGGTCCTTAGGCACCCAGATATCAGCCACTTTCACATTTCATTTCATTTTATGCTAACATTTACTAATCATC TTTTCTGCTTACTGTTTTCAGAAACATTATAATTCACTGTAATGATGTAATTCTTGAATAATAAATCTGACAAAA

refseq_IFIT1.F2 (forward primer)
refseq_IFIT1.R2 (reverse primer)
Single exon skipping

Frame 0

VTENPQDRIARSQRSLAKQNPAERLPNLQQP*G HLRMQQEGAICNPGRNSLPGTKLVVTFI*DF*PR ELTNGDDHQVKDSLEQLRCHFTWELSIDDDEMP DLENRVLDQIEFLDTKYSVGIHNLLAYVKHLKG QNEEALKSLKEAENLMQEEHDNQANVRSLVTWGN FAWMYYHMGRLAEAQTYLDKVENICKKLSNPFR YRMECPEIDCEEGWALLKCGGKNYERAKACFEK VLEVDPENPESSAGYAISAYRLDGFKLATKNHKP FSLLPLRQAVRLNPDNGYIKVLLALKLQDEGQE AEGEKYIEEALANMSSQTYVFRYAAKFYRRKGS VDKALELLKKALQETPTSVLLHHQIGLCYKAQMI QIKEATKGQPRGQNREKLDKMIRSAIFHFESAV EKKPTFEVAHLDLARMYIEAGNHRKAEENFQKL LCMKPVVEETMQDIHFHYGRFQEFQKKSDVNAII HYLKAIKIEQASLTRDKSINSLKKLVLRKLRRK ALDLESLSLLGFVYKLEGNMNEALEYYERALRL AADFENSVRQGP*APRYQPLSHFISFYANIY*SS FLLTVFRNIIIHCNDVILE**I*Q

Frame 1

*LKIHKTE*PDLRGAWLSKTLQNGCLIYSNHEA T*GCSKKEPSAIQEEIPCQEPNWLSPSSRTSSL ENLQMVMIIRSRIVWSN*DVTLHGSYPLMTMKCL I*KTESWIRLNS*TPNTVWEYTTY*PM*NT*KA RMRKP*RA*KKLKT*CRKNMTTKQM*GVW*PGA TLPGCITTWADWQKPRLTWTRWRTFARSFQIPSA IEWSVQK*TVRKDGPC*SVEEKIMNGPRPALKR CLKWTLKTLNPALGMRSLPIAWMALN*PQKITS HFLCFP*GRLSA*IQTMDILRFSLP*SFRMKDRK LKEKSTLKKL*PTCPHRPMSFDMQPSFTEEKAL WIKLLSY*KRPCRKHPLLSYCITR*GFATRHK* SKSRRLQKGSLEGRTEKS*TK**DQPYFILNLQW KKSPHLRWLI*TWQECI*KQAITEKLKRIFKNC YA*NQW*KKQCKTYISTMVGFRNFKRNLTSMQL SII*KL*K*NRHH*QGIKVSIL*RNWF*GNFGER H*IWKA*ASLGSSTNWKEI*MKPWSTMSGP*DW LLTLRTL*DKVLRHPDISHFHISFHFMLTFTNH LFCLLFSETL*FTVMM*FLNNKSDK

Frame 2

N*KSTRQNSQISEEPG*AKPCRTAA*FTATMRP LKDAARRSHLQSRKKFLARNQIGCHLHLGLLAS RTYKW**SSGQG*SGAIEMSLYMGVIH**R*NA *FRKQSLGSD*IPRHQIQCGNTQPTSLCETPERP E*GSPEELKRS*KLNAGRT*QPSKCEESGDLGQ LCLDVLPHGQTGRSPDLPGQGGEHLQEAFKSLP L*NGVSRNRL*GRMGLAEVWRKKL*TGQGLL*KG A*SGP*KP*IQRWVCDLCLSPGWL*ISHKKSQA IFFASPKAGCPLKSRQWIY*GSPCPEASG*RTG S*RRKVH*RSSSQHVLTDLCLSICSQVLPKKRLC G*SS*VIKKGLAGNTHFCLTASPDRALLQGTND PNQGGYKRAA*RAEQRKARQNDKISHISF*ICS GKKAHI*GGSSRPGKNVYRSRQSQKS*REFSKIV MHETSGRRNNARHTFPLWSVSGISKEI*RQCNY PLFKSYKNRTGIINKG*KYQFFEEIGFKETSEK GIRSGKLEPPWVRLQIGRKYE*SPGVL*AGPETG C*L*ELCETRSLGTQISATFTFHFILC*HLLII FSAYCFQKHYNSL**CNS*IINLTK