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Sequences

Sequence NM_001024631

GGGGCGGAGCTGGAGGGGGTGGTTCGGCGTGGGGGCCGTTGGCTCCAGACAAATAAACATGGAGTCCATCTTCCACGAGAAACAAGAAGGCTCACTTTGT
GCTCAACATTGCCTGAATAACTTATTGCAAGGAGAATATTTTAGCCCTGTGGAATTATCCTCAATTGCACATCAGCTGGATGAGGAGGAGAGGATGAGAA
TGGCAGAAGGAGGAGTTACTAGTGAAGATTATCGCACGTTTTTACAGCAGCCTTCTGGAAATATGGATGACAGTGGTTTTTTCTCTATTCAGAAATGAAA
GATCATTTATATGCAATTATAAGGAACACTGGTTTACAGTTAGAAAATTAGGAAAACAGTGGTTTAACTTGAATTCTCTCTTGACGGGTCCAGAATTAAT
ATCAGATACATATCTTGCACTTTTCTTGGCTCAATTACAACAGGAAGGTTATTCTATATTTGTCGTTAAGGGTGATCTGCCAGATTGCGAAGCTGACCAA
CTCCTGCAGATGATTAGGGTCCAACAGATGCATCGACCAAAACTTATTGGAGAAGAATTAGCACAACTAAAAGAGCAAAGAGTCCATAAAACAGACCTGG
AACGAGTGTTAGAAGCAAATGATGGCTCAGGAATGTTAGACGAAGATGAGGAGGATTTGCAGAGGGCTCTGGCACTAAGTCGCCAAGAAATTGACATGGA
AGATGAGGAAGCAGATCTCCGCAGGGCTATTCAGCTAAGTATGCAAGGTAGTTCCAGAAACATATCTCAAGATATGACACAGACATCAGGTACAAATCTT
ACTTCAGAAGAGCTTCGGAAGAGACGAGAAGCCTACTTTGAAAAACAGCAGCAAAAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGGGGGACCTATCAG
GACAGAGTTCACATCCATGTGAAAGGCCAGCCACCAGTTCAGGAGCACTTGGGAGTGATCTAGGTGATGCTATGAGTGAAGAAGACATGCTTCAGGCAGC
TGTGACCATGTCTTTAGAAACTGTCAGAAATGATTTGAAAACAGAAGGAAAAAAATAATACCTTTAAAAAATAATTTAGATATTCATACTTTCCAACATT
ATCCTGTGTGATTACAGCATAGGGTCCACTTTGGTAATGTGTCAAAGAGATGAGGAAATAAGACTTTTAGCGGTTTGCAAACAAAATGATGGGAAAGTGG
AACAATGCGTCGGTTGTAGGACTAAATAATGATCTTCCAAATATTAGCCAAAGAGGCATTCAGCAATTAAAGACATTTAAAATAGTTTTCTAAATGTTTC
TTTTTCTTTTTTGAGTGTGCAATATGTAACATGTCTAAAGTTAGGGCATTTTTCTTGGATCTTTTTGCAGACTAGCTAATTAGCTCTCGCCTCAGGCTTT
TTCCATATAGTTTGTTTTCTTTTTCTGTCTTGTAGGTAAGTTGGCTCACATCATGTAATAGTGGCTTTCATTTCTTATTAACCAAATTAACCTTTCAGGA
AAGTATCTCTACTTTCCTGATGTTGATAATAGTAATGGTTCTAGAAGGATGAACAGTTCTCCCTTCAACTGTATACCGTGTGCTCCAGTGTTTTCTTGTG
TTGTTTTCTCTGATCACAACTTTTCTGCTACCTGGTTTTCATTATTTTCCCACAATTCTTTTGAAAGATGGTAATCTTTTCTGAGGTTTAGCGTTTTAAG
CCCTACGATGGGATCATTATTTCATGACTGGTGCGTTCCTAAACTCTGAAATCAGCCTTGCACAAGTACTTGAGAATAAATGAGCATTTTTTAAAATGTG
TGAGCATGTGCTTTCCCAGATGCTTTATGAATGTCTTTTCACTTATATCAAAACCTTACAGCTTTGTTGCAACCCCTTCTTCCTGCGCCTTATTTTTTCC
TTTCTTCTCCAATTGAGAAAACTAGGAGAAGCATAGTATGCAGGCAAGTCTCCTTCTGTTAGAAGACTAAACATACGTACCCACCATGAATGTATGATAC
ATGAAATTTGGCCTTCAATTTTAATAGCAGTTTTATTTTATTTTTTCTCCTATGACTGGAGCTTTGTGTTCTCTTTACAGTTGAGTCATGGAATGTAGGT
GTCTGCTTCACATCTTTTAGTAGGTATAGCTTGTCAAAGATGGTGATCTGGAACATGAAAATAATTTACTAATGAAAATATGTTTAAATTTATACTGTGA
TTTGACACTTGCATCATGTTTAGATAGCTTAAGAACAATGGAAGTCACAGTACTTAGTGGATCTATAAATAAGAAAGTCCATAGTTTTGATAAATATTCT
CTTTAATTGAGATGTACAGAGAGTTTCTTGCTGGGTCAATAGGATAGTATCATTTTGGTGAAAACCATGTCTCTGAAATTGATGTTTTAGTTTCAGTGTT
CCCTATCCCTCATTCTCCATCTCCTTTTGAAGCTCTTTTGAATGTTGAATTGTTCATAAGCTAAAATCCAAGAAATTTCAGCTGACAACTTCGAAAATTA
TAATATGGTATATTGCCCTCCTGGTGTGTGGCTGCACACATTTTATCAGGGAAAGTTTTTTGATCTAGGATTTATTGCTAACTAACTGAAAA
  • refseq_ATXN3.F1 (forward primer)
  • refseq_ATXN3.R1 (reverse primer)
  • Single exon skipping

Frame 0

GAELEGVVRRGGRWLQTNKHGVHLPRETRRLTL
CSTLPE*LIARRIF*PCGIILNCTSAG*GGEDEN
GRRRSY**RLSHVFTAAFWKYG*QWFFLYSEMK
DHLYAIIRNTGLQLEN*ENSGLT*ILS*RVQN*
YQIHILHFSWLNYNRKVILYLSLRVICQIAKLTN
SCR*LGSNRCIDQNLLEKN*HN*KSKESIKQTW
NEC*KQMMAQEC*TKMRRICRGLWH*VAKKLTW
KMRKQISAGLFS*VCKVVPETYLKI*HRHQVQIL
LQKSFGRDEKPTLKNSSKSSNSSSSSSSRGTYQ
DRVHIHVKGQPPVQEHLGVI*VML*VKKTCFRQ
L*PCL*KLSEMI*KQKEKNNTFKK*FRYSYFPTL
SCVITA*GPLW*CVKEMRK*DF*RFANKMMGKW
NNASVVGLNNDLPNISQRGIQQLKTFKIVF*MF
LFLF*VCNM*HV*S*GIFLGSFCRLAN*LSPQAF
SI*FVFFFCLVGKLAHIM**WLSFLINQINLSG
KYLYFPDVDNSNGSRRMNSSPFNCIPCAPVFSC
VVFSDHNFSATWFSLFSHNSFERW*SFLRFSVLS
PTMGSLFHDWCVPKL*NQPCTST*E*MSIF*NV
*ACAFPDAL*MSFHLYQNLTALLQPLLPAPYFF
LSSPIEKTRRSIVCRQVSFC*KTKHTYPP*MYDT
*NLAFNFNSSFILFFLL*LELCVLFTVESWNVG
VCFTSFSRYSLSKMVIWNMKIIY**KYV*IYTV
I*HLHHV*IA*EQWKSQYLVDL*IRKSIVLINIL
FN*DVQRVSCWVNRIVSFW*KPCL*N*CFSFSV
PYPSFSISF*SSFEC*IVHKLKSKKFQLTTSKI
IIWYIALLVCGCTHFIRESFLI*DLLLTN*K

Frame 1

GRSWRGWFGVGAVGSRQINMESIFHEKQEGSLC
AQHCLNNLLQGEYFSPVELSSIAHQLDEEERMR
MAEGGVTSEDYRTFLQQPSGNMDDSGFFSIQK*K
IIYMQL*GTLVYS*KIRKTVV*LEFSLDGSRIN
IRYISCTFLGSITTGRLFYICR*G*SARLRS*P
TPADD*GPTDASTKTYWRRISTTKRAKSP*NRPG
TSVRSK*WLRNVRRR*GGFAEGSGTKSPRN*HG
R*GSRSPQGYSAKYAR*FQKHISRYDTDIRYKS
YFRRASEETRSLL*KTAAKAATAAAAAAAGGPIR
TEFTSM*KASHQFRSTWE*SR*CYE*RRHASGS
CDHVFRNCQK*FENRRKKIIPLKNNLDIHTFQH
YPV*LQHRVHFGNVSKR*GNKTFSGLQTK*WESG
TMRRL*D*IMIFQILAKEAFSN*RHLK*FSKCF
FFFFECAICNMSKVRAFFLDLFAD*LISSRLRL
FPYSLFSFSVL*VSWLTSCNSGFHFLLTKLTFQE
SISTFLMLIIVMVLEG*TVLPSTVYRVLQCFLV
LFSLITTFLLPGFHYFPTILLKDGNLF*GLAF*
ALRWDHYFMTGAFLNSEISLAQVLENK*AFFKMC
EHVLSQMLYECLFTYIKTLQLCCNPFFLRLIFS
FLLQLRKLGEA*YAGKSPSVRRLNIRTHHECMI
HEIWPSILIAVLFYFFSYDWSFVFSLQLSHGM*V
SASHLLVGIACQRW*SGT*K*FTNENMFKFIL*
FDTCIMFR*LKNNGSHST*WIYK*ESP*F**IF
SLIEMYREFLAGSIG*YHFGENHVSEIDVLVSVF
PIPHSPSPFEALLNVELFIS*NPRNFS*QLRKL
*YGILPSWCVAAHILSGKVF*SRIYC*LTE

Frame 2

GGAGGGGSAWGPLAPDK*TWSPSSTRNKKAHFV
LNIA*ITYCKENILALWNYPQLHISWMRRRG*E
WQKEELLVKIIARFYSSLLEIWMTVVFSLFRNE
RSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELI
SDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQ
LLQMIRVQQMHRPKLIGEELAQLKEQRVHKTDL
ERVLEANDGSGMLDEDEEDLQRALALSRQEIDME
DEEADLRRAIQLSMQGSSRNISQDMTQTSGTNL
TSEELRKRREAYFEKQQQKQQQQQQQQQQGDLS
GQSSHPCERPATSSGALGSDLGDAMSEEDMLQAA
VTMSLETVRNDLKTEGKK*YL*KII*IFILSNI
ILCDYSIGSTLVMCQRDEEIRLLAVCKQNDGKV
EQCVGCRTK**SSKY*PKRHSAIKDI*NSFLNVS
FSFLSVQYVTCLKLGHFSWIFLQTS*LALASGF
FHIVCFLFLSCR*VGSHHVIVAFISY*PN*PFR
KVSLLS*C****WF*KDEQFSLQLYTVCSSVFLC
CFL*SQLFCYLVFIIFPQFF*KMVIFSEV*RFK
PYDGIIIS*LVRS*TLKSALHKYLRINEHFLKC
VSMCFPRCFMNVFSLISKPYSFVATPSSCALFFP
FFSN*EN*EKHSMQASLLLLED*TYVPTMNV*Y
MKFGLQF**QFYFIFSPMTGALCSLYS*VMECR
CLLHIF**V*LVKDGDLEHENNLLMKICLNLYCD
LTLASCLDSLRTMEVTVLSGSINKKVHSFDKYS
L*LRCTESFLLGQ*DSIILVKTMSLKLMF*FQC
SLSLILHLLLKLF*MLNCS*AKIQEISADNFENY
NMVYCPPGVWLHTFYQGKFFDLGFIAN*LK

Sequence NM_004993

GGGGCGGAGCTGGAGGGGGTGGTTCGGCGTGGGGGCCGTTGGCTCCAGACAAATAAACATGGAGTCCATCTTCCACGAGAAACAAGAAGGCTCACTTTGT
GCTCAACATTGCCTGAATAACTTATTGCAAGGAGAATATTTTAGCCCTGTGGAATTATCCTCAATTGCACATCAGCTGGATGAGGAGGAGAGGATGAGAA
TGGCAGAAGGAGGAGTTACTAGTGAAGATTATCGCACGTTTTTACAGCAGCCTTCTGGAAATATGGATGACAGTGGTTTTTTCTCTATTCAGGTTATAAG
CAATGCCTTGAAAGTTTGGGGTTTAGAACTAATCCTGTTCAACAGTCCAGAGTATCAGAGGCTCAGGATCGATCCTATAAATGAAAGATCATTTATATGC
AATTATAAGGAACACTGGTTTACAGTTAGAAAATTAGGAAAACAGTGGTTTAACTTGAATTCTCTCTTGACGGGTCCAGAATTAATATCAGATACATATC
TTGCACTTTTCTTGGCTCAATTACAACAGGAAGGTTATTCTATATTTGTCGTTAAGGGTGATCTGCCAGATTGCGAAGCTGACCAACTCCTGCAGATGAT
TAGGGTCCAACAGATGCATCGACCAAAACTTATTGGAGAAGAATTAGCACAACTAAAAGAGCAAAGAGTCCATAAAACAGACCTGGAACGAGTGTTAGAA
GCAAATGATGGCTCAGGAATGTTAGACGAAGATGAGGAGGATTTGCAGAGGGCTCTGGCACTAAGTCGCCAAGAAATTGACATGGAAGATGAGGAAGCAG
ATCTCCGCAGGGCTATTCAGCTAAGTATGCAAGGTAGTTCCAGAAACATATCTCAAGATATGACACAGACATCAGGTACAAATCTTACTTCAGAAGAGCT
TCGGAAGAGACGAGAAGCCTACTTTGAAAAACAGCAGCAAAAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGGGGGACCTATCAGGACAGAGTTCACAT
CCATGTGAAAGGCCAGCCACCAGTTCAGGAGCACTTGGGAGTGATCTAGGTGATGCTATGAGTGAAGAAGACATGCTTCAGGCAGCTGTGACCATGTCTT
TAGAAACTGTCAGAAATGATTTGAAAACAGAAGGAAAAAAATAATACCTTTAAAAAATAATTTAGATATTCATACTTTCCAACATTATCCTGTGTGATTA
CAGCATAGGGTCCACTTTGGTAATGTGTCAAAGAGATGAGGAAATAAGACTTTTAGCGGTTTGCAAACAAAATGATGGGAAAGTGGAACAATGCGTCGGT
TGTAGGACTAAATAATGATCTTCCAAATATTAGCCAAAGAGGCATTCAGCAATTAAAGACATTTAAAATAGTTTTCTAAATGTTTCTTTTTCTTTTTTGA
GTGTGCAATATGTAACATGTCTAAAGTTAGGGCATTTTTCTTGGATCTTTTTGCAGACTAGCTAATTAGCTCTCGCCTCAGGCTTTTTCCATATAGTTTG
TTTTCTTTTTCTGTCTTGTAGGTAAGTTGGCTCACATCATGTAATAGTGGCTTTCATTTCTTATTAACCAAATTAACCTTTCAGGAAAGTATCTCTACTT
TCCTGATGTTGATAATAGTAATGGTTCTAGAAGGATGAACAGTTCTCCCTTCAACTGTATACCGTGTGCTCCAGTGTTTTCTTGTGTTGTTTTCTCTGAT
CACAACTTTTCTGCTACCTGGTTTTCATTATTTTCCCACAATTCTTTTGAAAGATGGTAATCTTTTCTGAGGTTTAGCGTTTTAAGCCCTACGATGGGAT
CATTATTTCATGACTGGTGCGTTCCTAAACTCTGAAATCAGCCTTGCACAAGTACTTGAGAATAAATGAGCATTTTTTAAAATGTGTGAGCATGTGCTTT
CCCAGATGCTTTATGAATGTCTTTTCACTTATATCAAAACCTTACAGCTTTGTTGCAACCCCTTCTTCCTGCGCCTTATTTTTTCCTTTCTTCTCCAATT
GAGAAAACTAGGAGAAGCATAGTATGCAGGCAAGTCTCCTTCTGTTAGAAGACTAAACATACGTACCCACCATGAATGTATGATACATGAAATTTGGCCT
TCAATTTTAATAGCAGTTTTATTTTATTTTTTCTCCTATGACTGGAGCTTTGTGTTCTCTTTACAGTTGAGTCATGGAATGTAGGTGTCTGCTTCACATC
TTTTAGTAGGTATAGCTTGTCAAAGATGGTGATCTGGAACATGAAAATAATTTACTAATGAAAATATGTTTAAATTTATACTGTGATTTGACACTTGCAT
CATGTTTAGATAGCTTAAGAACAATGGAAGTCACAGTACTTAGTGGATCTATAAATAAGAAAGTCCATAGTTTTGATAAATATTCTCTTTAATTGAGATG
TACAGAGAGTTTCTTGCTGGGTCAATAGGATAGTATCATTTTGGTGAAAACCATGTCTCTGAAATTGATGTTTTAGTTTCAGTGTTCCCTATCCCTCATT
CTCCATCTCCTTTTGAAGCTCTTTTGAATGTTGAATTGTTCATAAGCTAAAATCCAAGAAATTTCAGCTGACAACTTCGAAAATTATAATATGGTATATT
GCCCTCCTGGTGTGTGGCTGCACACATTTTATCAGGGAAAGTTTTTTGATCTAGGATTTATTGCTAACTAACTGAAAA
  • refseq_ATXN3.F1 (forward primer)
  • refseq_ATXN3.R1 (reverse primer)
  • Single exon skipping

Frame 0

GAELEGVVRRGGRWLQTNKHGVHLPRETRRLTL
CSTLPE*LIARRIF*PCGIILNCTSAG*GGEDEN
GRRRSY**RLSHVFTAAFWKYG*QWFFLYSGYK
QCLESLGFRTNPVQQSRVSEAQDRSYK*KIIYM
QL*GTLVYS*KIRKTVV*LEFSLDGSRINIRYIS
CTFLGSITTGRLFYICR*G*SARLRS*PTPADD
*GPTDASTKTYWRRISTTKRAKSP*NRPGTSVR
SK*WLRNVRRR*GGFAEGSGTKSPRN*HGR*GSR
SPQGYSAKYAR*FQKHISRYDTDIRYKSYFRRA
SEETRSLL*KTAAKAATAAAAAAAGGPIRTEFT
SM*KASHQFRSTWE*SR*CYE*RRHASGSCDHVF
RNCQK*FENRRKKIIPLKNNLDIHTFQHYPV*L
QHRVHFGNVSKR*GNKTFSGLQTK*WESGTMRR
L*D*IMIFQILAKEAFSN*RHLK*FSKCFFFFFE
CAICNMSKVRAFFLDLFAD*LISSRLRLFPYSL
FSFSVL*VSWLTSCNSGFHFLLTKLTFQESIST
FLMLIIVMVLEG*TVLPSTVYRVLQCFLVLFSLI
TTFLLPGFHYFPTILLKDGNLF*GLAF*ALRWD
HYFMTGAFLNSEISLAQVLENK*AFFKMCEHVL
SQMLYECLFTYIKTLQLCCNPFFLRLIFSFLLQL
RKLGEA*YAGKSPSVRRLNIRTHHECMIHEIWP
SILIAVLFYFFSYDWSFVFSLQLSHGM*VSASH
LLVGIACQRW*SGT*K*FTNENMFKFIL*FDTCI
MFR*LKNNGSHST*WIYK*ESP*F**IFSLIEM
YREFLAGSIG*YHFGENHVSEIDVLVSVFPIPH
SPSPFEALLNVELFIS*NPRNFS*QLRKL*YGIL
PSWCVAAHILSGKVF*SRIYC*LTE

Frame 1

GRSWRGWFGVGAVGSRQINMESIFHEKQEGSLC
AQHCLNNLLQGEYFSPVELSSIAHQLDEEERMR
MAEGGVTSEDYRTFLQQPSGNMDDSGFFSIQVIS
NALKVWGLELILFNSPEYQRLRIDPINERSFIC
NYKEHWFTVRKLGKQWFNLNSLLTGPELISDTY
LALFLAQLQQEGYSIFVVKGDLPDCEADQLLQMI
RVQQMHRPKLIGEELAQLKEQRVHKTDLERVLE
ANDGSGMLDEDEEDLQRALALSRQEIDMEDEEA
DLRRAIQLSMQGSSRNISQDMTQTSGTNLTSEEL
RKRREAYFEKQQQKQQQQQQQQQQGDLSGQSSH
PCERPATSSGALGSDLGDAMSEEDMLQAAVTMS
LETVRNDLKTEGKK*YL*KII*IFILSNIILCDY
SIGSTLVMCQRDEEIRLLAVCKQNDGKVEQCVG
CRTK**SSKY*PKRHSAIKDI*NSFLNVSFSFL
SVQYVTCLKLGHFSWIFLQTS*LALASGFFHIVC
FLFLSCR*VGSHHVIVAFISY*PN*PFRKVSLL
S*C****WF*KDEQFSLQLYTVCSSVFLCCFL*
SQLFCYLVFIIFPQFF*KMVIFSEV*RFKPYDGI
IIS*LVRS*TLKSALHKYLRINEHFLKCVSMCF
PRCFMNVFSLISKPYSFVATPSSCALFFPFFSN
*EN*EKHSMQASLLLLED*TYVPTMNV*YMKFGL
QF**QFYFIFSPMTGALCSLYS*VMECRCLLHI
F**V*LVKDGDLEHENNLLMKICLNLYCDLTLA
SCLDSLRTMEVTVLSGSINKKVHSFDKYSL*LRC
TESFLLGQ*DSIILVKTMSLKLMF*FQCSLSLI
LHLLLKLF*MLNCS*AKIQEISADNFENYNMVY
CPPGVWLHTFYQGKFFDLGFIAN*LK

Frame 2

GGAGGGGSAWGPLAPDK*TWSPSSTRNKKAHFV
LNIA*ITYCKENILALWNYPQLHISWMRRRG*E
WQKEELLVKIIARFYSSLLEIWMTVVFSLFRL*
AMP*KFGV*N*SCSTVQSIRGSGSIL*MKDHLYA
IIRNTGLQLEN*ENSGLT*ILS*RVQN*YQIHI
LHFSWLNYNRKVILYLSLRVICQIAKLTNSCR*
LGSNRCIDQNLLEKN*HN*KSKESIKQTWNEC*K
QMMAQEC*TKMRRICRGLWH*VAKKLTWKMRKQ
ISAGLFS*VCKVVPETYLKI*HRHQVQILLQKS
FGRDEKPTLKNSSKSSNSSSSSSSRGTYQDRVHI
HVKGQPPVQEHLGVI*VML*VKKTCFRQL*PCL
*KLSEMI*KQKEKNNTFKK*FRYSYFPTLSCVI
TA*GPLW*CVKEMRK*DF*RFANKMMGKWNNASV
VGLNNDLPNISQRGIQQLKTFKIVF*MFLFLF*
VCNM*HV*S*GIFLGSFCRLAN*LSPQAFSI*F
VFFFCLVGKLAHIM**WLSFLINQINLSGKYLYF
PDVDNSNGSRRMNSSPFNCIPCAPVFSCVVFSD
HNFSATWFSLFSHNSFERW*SFLRFSVLSPTMG
SLFHDWCVPKL*NQPCTST*E*MSIF*NV*ACAF
PDAL*MSFHLYQNLTALLQPLLPAPYFFLSSPI
EKTRRSIVCRQVSFC*KTKHTYPP*MYDT*NLA
FNFNSSFILFFLL*LELCVLFTVESWNVGVCFTS
FSRYSLSKMVIWNMKIIY**KYV*IYTVI*HLH
HV*IA*EQWKSQYLVDL*IRKSIVLINILFN*D
VQRVSCWVNRIVSFW*KPCL*N*CFSFSVPYPSF
SISF*SSFEC*IVHKLKSKKFQLTTSKIIIWYI
ALLVCGCTHFIRESFLI*DLLLTN*K

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