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Sequences

Sequence NM_187841

ATGAACTTCACAGTGGGTTTCAAGCCGCTGCTAGGGGATGCACACAGCATGGACAACCTGGAGAAGCAGCTCATCTGCCCCATCTGCCTGGAGATGTTCT
CCAAACCAGTGGTGATCCTGCCCTGCCAACACAACCTGTGCCGCAAATGTGCCAACGACGTCTTCCAGGCCTCGAATCCTCTATGGCAGTCCCGGGGCTC
CACCACTGTGTCTTCAGGAGGCCGTTTCCGCTGCCCATCGTGCAGGCATGAGGTTGTCCTGGACAGACACGGTGTCTACGGCCTGCAGCGAAACCTGCTA
GTGGAGAACATTATCGACATTTACAAGCAGGAGTCATCCAGGCCGCTGCACTCCAAGGCTGAGCAGCACCTCATGTGCGAGGAGCATGAAGAAGAGAAGA
TCAATATTTACTGCCTGAGCTGTGAGGTGCCCACCTGCTCTCTCTGCAAGGTCTTCGGTGCCCACAAGGACTGTGAGGTGGCCCCACTGCCCACCATTTA
CAAACGCCAGAAGAGTGAGCTCAGCGATGGCATCGCGATGCTGGTGGCAGGCAATGACCGCGTGCAAGCAGTGATCACACAGATGGAGGAGGTGTGCCAG
ACTATCGAGGACAATAGCCGGAGGCAGAAGCAGTTGTTAAACCAGAGGTTTGAGAGCCTGTGCGCAGTGCTGGAGGAGCGCAAGGGTGAGCTGCTGCAGG
CGCTGGCCCGGGAGCAAGAGGAGAAGCTGCAGCGCGTCCGCGGCCTCATCCGTCAGTATGGCGACCACCTGGAGGCCTCCTCTAAGCTGGTGGAGTCTGC
CATCCAGTCCATGGAAGAGCCACAAATGGCGCTGTATCTCCAGCAGGCCAAGGAGCTGATCAATAAGGTCGGGGCCATGTCGAAGGTGGAGCTGGCAGGG
CGGCCGGAGCCAGGCTATGAGAGCATGGAGCAATTCACCGTAAGGGTGGAGCACGTGGCCGAAATGCTGCGGACCATCGACTTCCAGCCAGGCGCTTCCG
GGGAGGAAGAGGAGGTGGCCCCAGACGGAGAGGAGGGCAGCGCGGGGCCGGAGGAAGAGCGGCCGGATGGGCCTTAAGGCCTGCGCCGACCCGACCCTGC
TCGAGAGCCCGCGCTAGAGTCGGGGAGGATCTGCGCAGAGACCGCAGCATCACCCAAATCGGCGCCGGCCCCGGGAGGATCTCAATAAAGAACTCGAGCG
TCCCAGACCCGTATCTCCTTTCGCTGCCCAACCCCGCAGCCTGGGCTTCGAAGGCGACCCGCCCACCATCCTGCCCTTCCCAGAACCTGAGACCGTCTGG
GGGGCGGAAGCCAAATGAACCCCTATTGGGCACCTCTGTGATGCCAGGAGCGAACTGGTGAGCCCAGCGCCCTGGGAAGAGGGCCGAGGGCGGGGCGGTG
GTGCCGGGACCTCTGAGGTCCTGGGGATTTGGGGACCCTTGGGGTCCACATGCACCTGGCTGACCTGGCTGAAAGCCGCTGTCTCGGAGCCCCCCACAGC
ATTTTGTTCCCCTCCCGCTGGCCCGGGGGCCCCACCTTCCCACGGGTTCCCACGCTGCTGTGACTGCCCTGCCTCTACGACAAAAGCCAACGGGTCTTCA
GTACTTTTATTAAAAAATAGTCACGCAGACA
  • refseq_TRIM54.F1 (forward primer)
  • refseq_TRIM54.R1 (reverse primer)
  • Single exon skipping

Frame 0

MNFTVGFKPLLGDAHSMDNLEKQLICPICLEMF
SKPVVILPCQHNLCRKCANDVFQASNPLWQSRGS
TTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLL
VENIIDIYKQESSRPLHSKAEQHLMCEEHEEEK
INIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIY
KRQKSELSDGIAMLVAGNDRVQAVITQMEEVCQ
TIEDNSRRQKQLLNQRFESLCAVLEERKGELLQ
ALAREQEEKLQRVRGLIRQYGDHLEASSKLVESA
IQSMEEPQMALYLQQAKELINKVGAMSKVELAG
RPEPGYESMEQFTVRVEHVAEMLRTIDFQPGAS
GEEEEVAPDGEEGSAGPEEERPDGP*GLRRPDPA
REPALESGRICAETAASPKSAPAPGGSQ*RTRA
SQTRISFRCPTPQPGLRRRPAHHPALPRT*DRL
GGGSQMNPYWAPL*CQERTGEPSALGRGPRAGRW
CRDL*GPGDLGTLGVHMHLADLAESRCLGAPHS
ILFPSRWPGGPTFPRVPTLL*LPCLYDKSQRVF
STFIKK*SRR

Frame 1

*TSQWVSSRC*GMHTAWTTWRSSSSAPSAWRCS
PNQW*SCPANTTCAANVPTTSSRPRILYGSPGA
PPLCLQEAVSAAHRAGMRLSWTDTVSTACSETC*
WRTLSTFTSRSHPGRCTPRLSSTSCARSMKKRR
SIFTA*AVRCPPALSARSSVPTRTVRWPHCPPF
TNARRVSSAMASRCWWQAMTACKQ*SHRWRRCAR
LSRTIAGGRSSC*TRGLRACAQCWRSARVSCCR
RWPGSKRRSCSASAASSVSMATTWRPPLSWWSL
PSSPWKSHKWRCISSRPRS*SIRSGPCRRWSWQG
GRSQAMRAWSNSP*GWSTWPKCCGPSTSSQALP
GRKRRWPQTERRAARGRRKSGRMGLKACADPTL
LESPR*SRGGSAQRPQHHPNRRRPREDLNKELER
PRPVSPFAAQPRSLGFEGDPPTILPFPEPETVW
GAEAK*TPIGHLCDARSELVSPAPWEEGRGRGG
GAGTSEVLGIWGPLGSTCTWLTWLKAAVSEPPTA
FCSPPAGPGAPPSHGFPRCCDCPASTTKANGSS
VLLLKNSHAD

Frame 2

ELHSGFQAAARGCTQHGQPGEAAHLPHLPGDVL
QTSGDPALPTQPVPQMCQRRLPGLESSMAVPGL
HHCVFRRPFPLPIVQA*GCPGQTRCLRPAAKPA
SGEHYRHLQAGVIQAAALQG*AAPHVRGA*RRED
QYLLPEL*GAHLLSLQGLRCPQGL*GGPTAHHL
QTPEE*AQRWHRDAGGRQ*PRASSDHTDGGGVP
DYRGQ*PEAEAVVKPEV*EPVRSAGGAQG*AAAG
AGPGARGEAAARPRPHPSVWRPPGGLL*AGGVC
HPVHGRATNGAVSPAGQGADQ*GRGHVEGGAGR
AAGARL*EHGAIHRKGGARGRNAADHRLPARRFR
GGRGGGPRRRGGQRGAGGRAAGWALRPAPTRPC
SRARARVGEDLRRDRSITQIGAGPGRISIKNSS
VPDPYLLSLPNPAAWASKATRPPSCPSQNLRPSG
GRKPNEPLLGTSVMPGANW*AQRPGKRAEGGAV
VPGPLRSWGFGDPWGPHAPG*PG*KPLSRSPPQ
HFVPLPLARGPHLPTGSHAAVTALPLRQKPTGLQ
YFY*KIVTQT

Sequence NM_032546

ATGAACTTCACAGTGGGTTTCAAGCCGCTGCTAGGGGATGCACACAGCATGGACAACCTGGAGAAGCAGCTCATCTGCCCCATCTGCCTGGAGATGTTCT
CCAAACCAGTGGTGATCCTGCCCTGCCAACACAACCTGTGCCGCAAATGTGCCAACGACGTCTTCCAGGCCTCGAATCCTCTATGGCAGTCCCGGGGCTC
CACCACTGTGTCTTCAGGAGGCCGTTTCCGCTGCCCATCGTGCAGGCATGAGGTTGTCCTGGACAGACACGGTGTCTACGGCCTGCAGCGAAACCTGCTA
GTGGAGAACATTATCGACATTTACAAGCAGGAGTCATCCAGGCCGCTGCACTCCAAGGCTGAGCAGCACCTCATGTGCGAGGAGCATGAAGAAGAGAAGA
TCAATATTTACTGCCTGAGCTGTGAGGTGCCCACCTGCTCTCTCTGCAAGGTCTTCGGTGCCCACAAGGACTGTGAGGTGGCCCCACTGCCCACCATTTA
CAAACGCCAGAAGAAACAGGATCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCACAAACACAACTTACTGCAGCCTTGATCTCCCGAGCTCAAGTGAT
CCTCCCATCTTAGCCTCGCAGAACACTAAGATTATAGATAGTGAGCTCAGCGATGGCATCGCGATGCTGGTGGCAGGCAATGACCGCGTGCAAGCAGTGA
TCACACAGATGGAGGAGGTGTGCCAGACTATCGAGGACAATAGCCGGAGGCAGAAGCAGTTGTTAAACCAGAGGTTTGAGAGCCTGTGCGCAGTGCTGGA
GGAGCGCAAGGGTGAGCTGCTGCAGGCGCTGGCCCGGGAGCAAGAGGAGAAGCTGCAGCGCGTCCGCGGCCTCATCCGTCAGTATGGCGACCACCTGGAG
GCCTCCTCTAAGCTGGTGGAGTCTGCCATCCAGTCCATGGAAGAGCCACAAATGGCGCTGTATCTCCAGCAGGCCAAGGAGCTGATCAATAAGGTCGGGG
CCATGTCGAAGGTGGAGCTGGCAGGGCGGCCGGAGCCAGGCTATGAGAGCATGGAGCAATTCACCGTAAGGGTGGAGCACGTGGCCGAAATGCTGCGGAC
CATCGACTTCCAGCCAGGCGCTTCCGGGGAGGAAGAGGAGGTGGCCCCAGACGGAGAGGAGGGCAGCGCGGGGCCGGAGGAAGAGCGGCCGGATGGGCCT
TAAGGCCTGCGCCGACCCGACCCTGCTCGAGAGCCCGCGCTAGAGTCGGGGAGGATCTGCGCAGAGACCGCAGCATCACCCAAATCGGCGCCGGCCCCGG
GAGGATCTCAATAAAGAACTCGAGCGTCCCAGACCCGTATCTCCTTTCGCTGCCCAACCCCGCAGCCTGGGCTTCGAAGGCGACCCGCCCACCATCCTGC
CCTTCCCAGAACCTGAGACCGTCTGGGGGGCGGAAGCCAAATGAACCCCTATTGGGCACCTCTGTGATGCCAGGAGCGAACTGGTGAGCCCAGCGCCCTG
GGAAGAGGGCCGAGGGCGGGGCGGTGGTGCCGGGACCTCTGAGGTCCTGGGGATTTGGGGACCCTTGGGGTCCACATGCACCTGGCTGACCTGGCTGAAA
GCCGCTGTCTCGGAGCCCCCCACAGCATTTTGTTCCCCTCCCGCTGGCCCGGGGGCCCCACCTTCCCACGGGTTCCCACGCTGCTGTGACTGCCCTGCCT
CTACGACAAAAGCCAACGGGTCTTCAGTACTTTTATTAAAAAATAGTCACGCAGACA
  • refseq_TRIM54.F1 (forward primer)
  • refseq_TRIM54.R1 (reverse primer)
  • Single exon skipping

Frame 0

MNFTVGFKPLLGDAHSMDNLEKQLICPICLEMF
SKPVVILPCQHNLCRKCANDVFQASNPLWQSRGS
TTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLL
VENIIDIYKQESSRPLHSKAEQHLMCEEHEEEK
INIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIY
KRQKKQDLTLLPRLECSGTNTTYCSLDLPSSSD
PPILASQNTKIIDSELSDGIAMLVAGNDRVQAV
ITQMEEVCQTIEDNSRRQKQLLNQRFESLCAVLE
ERKGELLQALAREQEEKLQRVRGLIRQYGDHLE
ASSKLVESAIQSMEEPQMALYLQQAKELINKVG
AMSKVELAGRPEPGYESMEQFTVRVEHVAEMLRT
IDFQPGASGEEEEVAPDGEEGSAGPEEERPDGP
*GLRRPDPAREPALESGRICAETAASPKSAPAP
GGSQ*RTRASQTRISFRCPTPQPGLRRRPAHHPA
LPRT*DRLGGGSQMNPYWAPL*CQERTGEPSAL
GRGPRAGRWCRDL*GPGDLGTLGVHMHLADLAE
SRCLGAPHSILFPSRWPGGPTFPRVPTLL*LPCL
YDKSQRVFSTFIKK*SRR

Frame 1

*TSQWVSSRC*GMHTAWTTWRSSSSAPSAWRCS
PNQW*SCPANTTCAANVPTTSSRPRILYGSPGA
PPLCLQEAVSAAHRAGMRLSWTDTVSTACSETC*
WRTLSTFTSRSHPGRCTPRLSSTSCARSMKKRR
SIFTA*AVRCPPALSARSSVPTRTVRWPHCPPF
TNARRNRISLCCPGWSAVAQTQLTAALISRAQVI
LPS*PRRTLRL*IVSSAMASRCWWQAMTACKQ*
SHRWRRCARLSRTIAGGRSSC*TRGLRACAQCW
RSARVSCCRRWPGSKRRSCSASAASSVSMATTWR
PPLSWWSLPSSPWKSHKWRCISSRPRS*SIRSG
PCRRWSWQGGRSQAMRAWSNSP*GWSTWPKCCG
PSTSSQALPGRKRRWPQTERRAARGRRKSGRMGL
KACADPTLLESPR*SRGGSAQRPQHHPNRRRPR
EDLNKELERPRPVSPFAAQPRSLGFEGDPPTIL
PFPEPETVWGAEAK*TPIGHLCDARSELVSPAPW
EEGRGRGGGAGTSEVLGIWGPLGSTCTWLTWLK
AAVSEPPTAFCSPPAGPGAPPSHGFPRCCDCPA
STTKANGSSVLLLKNSHAD

Frame 2

ELHSGFQAAARGCTQHGQPGEAAHLPHLPGDVL
QTSGDPALPTQPVPQMCQRRLPGLESSMAVPGL
HHCVFRRPFPLPIVQA*GCPGQTRCLRPAAKPA
SGEHYRHLQAGVIQAAALQG*AAPHVRGA*RRED
QYLLPEL*GAHLLSLQGLRCPQGL*GGPTAHHL
QTPEETGSHSVAQAGVQWHKHNLLQP*SPELK*
SSHLSLAEH*DYR**AQRWHRDAGGRQ*PRASSD
HTDGGGVPDYRGQ*PEAEAVVKPEV*EPVRSAG
GAQG*AAAGAGPGARGEAAARPRPHPSVWRPPG
GLL*AGGVCHPVHGRATNGAVSPAGQGADQ*GRG
HVEGGAGRAAGARL*EHGAIHRKGGARGRNAAD
HRLPARRFRGGRGGGPRRRGGQRGAGGRAAGWA
LRPAPTRPCSRARARVGEDLRRDRSITQIGAGPG
RISIKNSSVPDPYLLSLPNPAAWASKATRPPSC
PSQNLRPSGGRKPNEPLLGTSVMPGANW*AQRP
GKRAEGGAVVPGPLRSWGFGDPWGPHAPG*PG*K
PLSRSPPQHFVPLPLARGPHLPTGSHAAVTALP
LRQKPTGLQYFY*KIVTQT

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