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Sequences

Sequence NM_052816

ATCCATTTGTTCTCAAGAGGTAGCAAGAAACAGTATCCACAGTGGACTCCGGGGCTCCTACAGACTTGGCACAGCTTCCTACAGTCTTGAAACAGCCCTG
TTGTTCTGTCATGGCCAGTGGGCAGTTTGTGAACAAACTGCAAGAGGAAGTGATCTGCCCCATCTGCCTGGACATTCTGCAGAAACCTGTCACCATCGAC
TGTGGGCACAATTTCTGCCTCAAATGCATCACTCAGATTGGGGAAACATCATGTGGATTTTTCAAATGTCCCCTCTGCAAAACTTCCGTAAGGAAGAACG
CAATCAGGTTCAACTCGCTGTTGCGGAATCTGGTGGAGAAAATCCAAGCTCTACAAGCCTCTGAGGTGCAGTCCAAAAGGAAAGAGGCTACATGCCCGAG
GCACCAGGAGATGTTCCACTATTTCTGCGAGGATGATGGGAAGTTCCTCTGTTTTGTGTGTCGTGAATCCAAGGACCACAAATCCCATAATGTCAGCTTG
ATCGAAGAAGCTGCCCAGAATTATCAGGGGCAGATTCAAGAGCAGATCCAAGTCTTGCAGCAAAAGGAGAAGGAGACAGTACAAGTGAAGGCACAAGGTG
TACACAGGGTCGATGTCTTCACGGACCAGGTAGAACATGAGAAGCAAAGGATCCTCACAGAATTTGAACTCCTGCATCAAGTCCTAGAGGAGGAGAAGAA
TTTCCTGCTATCACGGATTTACTGGCTGGGTCATGAGGGAACGGAAGCGGGGAAACACTATGTTGCCTCCACTGAGCCACAGTTGAACGATCTCAAGAAG
CTCGTTGATTCCCTGAAGACCAAGCAGAACATGCCACCCAGGCAGCTGCTGGAGAACTGGAGAAAAAACTCAGTGAAGCAAAATCAAGACATGACTCCAT
CACAGGGAGCCTAAAAAAATTCAAAGACCAACTCCAGGCTGATAGGAAAAAAGATGAAAACAGATTCTTCAAAAGCATGAATAAAAATGACATGAAGAGC
TGGGGCTTGTTACAGAAAAATAATCATAAAATGAACAAAACCTCAGAGCCCGGGTCATCTTCTGCAGGCGGCAGAACTACATCGGGGCCACCAAATCACC
ACTCTTCAGCCCCATCCCACTCCCTGTTTCGGGCCTCGTCTGCTGGGAAAGTCACTTTTCCAGTATGTCTCCTGGCCTCTTATGATGAGATTTCTGGTCA
AGGAGCGAGCTCTCAGGATACGAAGACATTTGACGTTGCGCTGTCCGAGGAGCTCCATGCGGCACTGAGTGAGTGGCTGACAGCGATCCGGGCTTGGTTT
TGTGAGGTTCCTTCAAGCTAAGCCAGCTCAGAGAACACGGGGAGCGGTGGTGCTACACGGACTTCGGAGCATAGAGTGGCGCTGAGTGAGTGGCTGAGAC
CGACCACGGTTCTTGACTTAGTGGAATTGGGTCGAAGGAGTGGAGAATGGGAGGGCTCGGGCTACTGAGAGTGGAGATGGGGGCGGGGGTGGTGGTGAAG
AGAGTTGGAGAAGGAATGGACGAATTCTTGAGCAAAAGGAGGGGAAGAGACAATCTCCAGCCACCCGCCCCACGCTTGACTTCTTATCACTTTGGCTGTG
GTGCCGCCTAGTGGAAAAAGGAAGTCCCTGCAGCAGTCCCCGCACTCTTTAAGCAGCTGTTTACCGAAGGCACCAGTTCAGCCAGGAGTGAAATCCGGAG
AGGAGCAACGCCAGCCTGGGTCACAGTCCATCAAACCCCATGAGCCCGACCACTCTCGCTCTTCCTTACATTCCCACGTCCCCCTTCTCTCCCAACCCCT
CATATCAGCAAGGGAAATTAATTAATGAGATTTGATAAATCAGTAGATAGAATGAGGTCCCCATTCTGAAATATTTAGCAGACTGGAACCACCACGCAAG
CCTCTGTAGGGGGTGGATGGAGACACTTCTAACTTTAATAAACTGCGACTGAACGTGGAA
  • refseq_TRIM31.F1 (forward primer)
  • refseq_TRIM31.R1 (reverse primer)
  • Exon skipping and alternative donor or acceptor

Frame 0

IHLFSRGSKKQYPQWTPGLLQTWHSFLQS*NSP
VVLSWPVGSL*TNCKRK*SAPSAWTFCRNLSPST
VGTISASNASLRLGKHHVDFSNVPSAKLP*GRT
QSGSTRCCGIWWRKSKLYKPLRCSPKGKRLHAR
GTRRCSTISARMMGSSSVLCVVNPRTTNPIMSA*
SKKLPRIIRGRFKSRSKSCSKRRRRQYK*RHKV
YTGSMSSRTR*NMRSKGSSQNLNSCIKS*RRRR
ISCYHGFTGWVMRERKRGNTMLPPLSHS*TISRS
SLIP*RPSRTCHPGSCWRTGEKTQ*SKIKT*LH
HREPKKIQRPTPG**EKR*KQILQKHE*K*HEE
LGLVTEK*S*NEQNLRARVIFCRRQNYIGATKSP
LFSPIPLPVSGLVCWESHFSSMSPGLL**DFWS
RSELSGYEDI*RCAVRGAPCGTE*VADSDPGLV
L*GSFKLSQLREHGERWCYTDFGA*SGAE*VAET
DHGS*LSGIGSKEWRMGGLGLLRVEMGAGVVVK
RVGEGMDEFLSKRRGRDNLQPPAPRLTSYHFGC
GAA*WKKEVPAAVPALFKQLFTEGTSSARSEIRR
GATPAWVTVHQTP*ARPLSLFLTFPRPPSLPTP
HISKGN*LMRFDKSVDRMRSPF*NI*QTGTTTQ
ASVGGGWRHF*L**TATERG

Frame 1

SICSQEVARNSIHSGLRGSYRLGTASYSLETAL
LFCHGQWAVCEQTARGSDLPHLPGHSAETCHHR
LWAQFLPQMHHSDWGNIMWIFQMSPLQNFRKEER
NQVQLAVAESGGENPSSTSL*GAVQKERGYMPE
APGDVPLFLRG*WEVPLFCVS*IQGPQIP*CQL
DRRSCPELSGADSRADPSLAAKGEGDSTSEGTRC
TQGRCLHGPGRT*EAKDPHRI*TPASSPRGGEE
FPAITDLLAGS*GNGSGETLCCLH*ATVERSQE
AR*FPEDQAEHATQAAAGELEKKLSEAKSRHDSI
TGSLKKFKDQLQADRKKDENRFFKSMNKNDMKS
WGLLQKNNHKMNKTSEPGSSSAGGRTTSGPPNH
HSSAPSHSLFRASSAGKVTFPVCLLASYDEISGQ
GASSQDTKTFDVALSEELHAALSEWLTAIRAWF
CEVPSS*ASSENTGSGGATRTSEHRVALSEWLR
PTTVLDLVELGRRSGEWEGSGY*EWRWGRGWW*R
ELEKEWTNS*AKGGEETISSHPPHA*LLITLAV
VPPSGKRKSLQQSPHSLSSCLPKAPVQPGVKSG
EEQRQPGSQSIKPHEPDHSRSSLHSHVPLLSQPL
ISAREIN**DLINQ*IE*GPHSEIFSRLEPPRK
PL*GVDGDTSNFNKLRLNVE

Frame 2

PFVLKR*QETVSTVDSGAPTDLAQLPTVLKQPC
CSVMASGQFVNKLQEEVICPICLDILQKPVTID
CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN
AIRFNSLLRNLVEKIQALQASEVQSKRKEATCPR
HQEMFHYFCEDDGKFLCFVCRESKDHKSHNVSL
IEEAAQNYQGQIQEQIQVLQQKEKETVQVKAQG
VHRVDVFTDQVEHEKQRILTEFELLHQVLEEEKN
FLLSRIYWLGHEGTEAGKHYVASTEPQLNDLKK
LVDSLKTKQNMPPRQLLENWRKNSVKQNQDMTP
SQGA*KNSKTNSRLIGKKMKTDSSKA*IKMT*RA
GACYRKIIIK*TKPQSPGHLLQAAELHRGHQIT
TLQPHPTPCFGPRLLGKSLFQYVSWPLMMRFLV
KERALRIRRHLTLRCPRSSMRH*VSG*QRSGLGF
VRFLQAKPAQRTRGAVVLHGLRSIEWR*VSG*D
RPRFLT*WNWVEGVENGRARATESGDGGGGGGE
ESWRRNGRILEQKEGKRQSPATRPTLDFLSLWLW
CRLVEKGSPCSSPRTL*AAVYRRHQFSQE*NPE
RSNASLGHSPSNPMSPTTLALPYIPTSPFSPNP
SYQQGKLINEI**ISR*NEVPILKYLADWNHHAS
LCRGWMETLLTLINCD*TW

Sequence NM_007028

ATCCATTTGTTCTCAAGAGGTAGCAAGAAACAGTATCCACAGTGGACTCCGGGGCTCCTACAGACTTGGCACAGCTTCCTACAGTCTTGAAACAGCCCTG
TTGTTCTGTCATGGCCAGTGGGCAGTTTGTGAACAAACTGCAAGAGGAAGTGATCTGCCCCATCTGCCTGGACATTCTGCAGAAACCTGTCACCATCGAC
TGTGGGCACAATTTCTGCCTCAAATGCATCACTCAGATTGGGGAAACATCATGTGGATTTTTCAAATGTCCCCTCTGCAAAACTTCCGTAAGGAAGAACG
CAATCAGGTTCAACTCGCTGTTGCGGAATCTGGTGGAGAAAATCCAAGCTCTACAAGCCTCTGAGGTGCAGTCCAAAAGGAAAGAGGCTACATGCCCGAG
GCACCAGGAGATGTTCCACTATTTCTGCGAGGATGATGGGAAGTTCCTCTGTTTTGTGTGTCGTGAATCCAAGGACCACAAATCCCATAATGTCAGCTTG
ATCGAAGAAGCTGCCCAGAATTATCAGGGGCAGATTCAAGAGCAGATCCAAGTCTTGCAGCAAAAGGAGAAGGAGACAGTACAAGTGAAGGCACAAGGTG
TACACAGGGTCGATGTCTTCACGGACCAGGTAGAACATGAGAAGCAAAGGATCCTCACAGAATTTGAACTCCTGCATCAAGTCCTAGAGGAGGAGAAGAA
TTTCCTGCTATCACGGATTTACTGGCTGGGTCATGAGGGAACGGAAGCGGGGAAACACTATGTTGCCTCCACTGAGCCACAGTTGAACGATCTCAAGAAG
CTCGTTGATTCCCTGAAGACCAAGCAGAACATGCCACCCAGGCAGCTGCTGGAGGATATCAAAGTCGTCTTGTGCAGAAGTGAAGAGTTTCAGTTTCTCA
ACCCAACCCCTGTTCCTCTGGAACTGGAGAAAAAACTCAGTGAAGCAAAATCAAGACATGACTCCATCACAGGGAGCCTAAAAAAATTCAAAGACCAACT
CCAGGCTGATAGGAAAAAAGATGAAAACAGATTCTTCAAAAGCATGAATAAAAATGACATGAAGAGCTGGGGCTTGTTACAGAAAAATAATCATAAAATG
AACAAAACCTCAGAGCCCGGGTCATCTTCTGCAGGCGGCAGAACTACATCGGGGCCACCAAATCACCACTCTTCAGCCCCATCCCACTCCCTGTTTCGGG
CCTCGTCTGCTGGGAAAGTCACTTTTCCAGTATGTCTCCTGGCCTCTTATGATGAGATTTCTGGTCAAGGAGCGAGCTCTCAGGATACGAAGACATTTGA
CGTTGCGCTGTCCGAGGAGCTCCATGCGGCACTGAGTGAGTGGCTGACAGCGATCCGGGCTTGGTTTTGTGAGGTTCCTTCAAGCTAAGCCAGCTCAGAG
AACACGGGGAGCGGTGGTGCTACACGGACTTCGGAGCATAGAGTGGCGCTGAGTGAGTGGCTGAGACCGACCACGGTTCTTGACTTAGTGGAATTGGGTC
GAAGGAGTGGAGAATGGGAGGGCTCGGGCTACTGAGAGTGGAGATGGGGGCGGGGGTGGTGGTGAAGAGAGTTGGAGAAGGAATGGACGAATTCTTGAGC
AAAAGGAGGGGAAGAGACAATCTCCAGCCACCCGCCCCACGCTTGACTTCTTATCACTTTGGCTGTGGTGCCGCCTAGTGGAAAAAGGAAGTCCCTGCAG
CAGTCCCCGCACTCTTTAAGCAGCTGTTTACCGAAGGCACCAGTTCAGCCAGGAGTGAAATCCGGAGAGGAGCAACGCCAGCCTGGGTCACAGTCCATCA
AACCCCATGAGCCCGACCACTCTCGCTCTTCCTTACATTCCCACGTCCCCCTTCTCTCCCAACCCCTCATATCAGCAAGGGAAATTAATTAATGAGATTT
GATAAATCAGTAGATAGAATGAGGTCCCCATTCTGAAATATTTAGCAGACTGGAACCACCACGCAAGCCTCTGTAGGGGGTGGATGGAGACACTTCTAAC
TTTAATAAACTGCGACTGAACGTGGAA
  • refseq_TRIM31.F1 (forward primer)
  • refseq_TRIM31.R1 (reverse primer)
  • Exon skipping and alternative donor or acceptor

Frame 0

IHLFSRGSKKQYPQWTPGLLQTWHSFLQS*NSP
VVLSWPVGSL*TNCKRK*SAPSAWTFCRNLSPST
VGTISASNASLRLGKHHVDFSNVPSAKLP*GRT
QSGSTRCCGIWWRKSKLYKPLRCSPKGKRLHAR
GTRRCSTISARMMGSSSVLCVVNPRTTNPIMSA*
SKKLPRIIRGRFKSRSKSCSKRRRRQYK*RHKV
YTGSMSSRTR*NMRSKGSSQNLNSCIKS*RRRR
ISCYHGFTGWVMRERKRGNTMLPPLSHS*TISRS
SLIP*RPSRTCHPGSCWRISKSSCAEVKSFSFS
TQPLFLWNWRKNSVKQNQDMTPSQGA*KNSKTN
SRLIGKKMKTDSSKA*IKMT*RAGACYRKIIIK*
TKPQSPGHLLQAAELHRGHQITTLQPHPTPCFG
PRLLGKSLFQYVSWPLMMRFLVKERALRIRRHL
TLRCPRSSMRH*VSG*QRSGLGFVRFLQAKPAQR
TRGAVVLHGLRSIEWR*VSG*DRPRFLT*WNWV
EGVENGRARATESGDGGGGGGEESWRRNGRILE
QKEGKRQSPATRPTLDFLSLWLWCRLVEKGSPCS
SPRTL*AAVYRRHQFSQE*NPERSNASLGHSPS
NPMSPTTLALPYIPTSPFSPNPSYQQGKLINEI
**ISR*NEVPILKYLADWNHHASLCRGWMETLLT
LINCD*TW

Frame 1

SICSQEVARNSIHSGLRGSYRLGTASYSLETAL
LFCHGQWAVCEQTARGSDLPHLPGHSAETCHHR
LWAQFLPQMHHSDWGNIMWIFQMSPLQNFRKEER
NQVQLAVAESGGENPSSTSL*GAVQKERGYMPE
APGDVPLFLRG*WEVPLFCVS*IQGPQIP*CQL
DRRSCPELSGADSRADPSLAAKGEGDSTSEGTRC
TQGRCLHGPGRT*EAKDPHRI*TPASSPRGGEE
FPAITDLLAGS*GNGSGETLCCLH*ATVERSQE
AR*FPEDQAEHATQAAAGGYQSRLVQK*RVSVSQ
PNPCSSGTGEKTQ*SKIKT*LHHREPKKIQRPT
PG**EKR*KQILQKHE*K*HEELGLVTEK*S*N
EQNLRARVIFCRRQNYIGATKSPLFSPIPLPVSG
LVCWESHFSSMSPGLL**DFWSRSELSGYEDI*
RCAVRGAPCGTE*VADSDPGLVL*GSFKLSQLR
EHGERWCYTDFGA*SGAE*VAETDHGS*LSGIGS
KEWRMGGLGLLRVEMGAGVVVKRVGEGMDEFLS
KRRGRDNLQPPAPRLTSYHFGCGAA*WKKEVPA
AVPALFKQLFTEGTSSARSEIRRGATPAWVTVHQ
TP*ARPLSLFLTFPRPPSLPTPHISKGN*LMRF
DKSVDRMRSPF*NI*QTGTTTQASVGGGWRHF*
L**TATERG

Frame 2

PFVLKR*QETVSTVDSGAPTDLAQLPTVLKQPC
CSVMASGQFVNKLQEEVICPICLDILQKPVTID
CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN
AIRFNSLLRNLVEKIQALQASEVQSKRKEATCPR
HQEMFHYFCEDDGKFLCFVCRESKDHKSHNVSL
IEEAAQNYQGQIQEQIQVLQQKEKETVQVKAQG
VHRVDVFTDQVEHEKQRILTEFELLHQVLEEEKN
FLLSRIYWLGHEGTEAGKHYVASTEPQLNDLKK
LVDSLKTKQNMPPRQLLEDIKVVLCRSEEFQFL
NPTPVPLELEKKLSEAKSRHDSITGSLKKFKDQL
QADRKKDENRFFKSMNKNDMKSWGLLQKNNHKM
NKTSEPGSSSAGGRTTSGPPNHHSSAPSHSLFR
ASSAGKVTFPVCLLASYDEISGQGASSQDTKTFD
VALSEELHAALSEWLTAIRAWFCEVPSS*ASSE
NTGSGGATRTSEHRVALSEWLRPTTVLDLVELG
RRSGEWEGSGY*EWRWGRGWW*RELEKEWTNS*A
KGGEETISSHPPHA*LLITLAVVPPSGKRKSLQ
QSPHSLSSCLPKAPVQPGVKSGEEQRQPGSQSI
KPHEPDHSRSSLHSHVPLLSQPLISAREIN**DL
INQ*IE*GPHSEIFSRLEPPRKPL*GVDGDTSN
FNKLRLNVE

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