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Sequences

Sequence BCL2L1.cAug05

GGCTGCGCTGGGGCGGACCGCCGGGGGCGAGGCCCCTCCTCTCAGGAAGGTCTAGGGGGCGCCCCCGGGGGAGGGCGGTTGCCTAGCAACGGGGCGGTGG CTCGGCGGGTACCCGGCCTAGTGAGCTCGAGAAGCCGCTAGGCCGCAGCCGGCCCACCCTGGGCTCCGGAGAGGTGCAGCCCCCGGCCCCGGAGCCCTCC CGGGGGCGCCAGAAAGCCACTTTGGGCCTGTCCCCAGGAAAACGTGGTCTCAGCTGTGGGGCCGTCGAGCAGGCCTCGACCCCTCTTCCTGACCTGAGGA GAGGCCCAGCGCCTCACCCTCACCCAGTCTTTGTGCAGGGCGCCGGCGGCCATTGTGTCCGGGCGGGGAATGGAGGACCCGGCAATCCCCAACTGCCACG TTCTGGGCCTTTGGGGAATTCAGAGCAAACCAGCGGCATTTGTTGGGGGTCTCCGGCCTTCAACATCACAGACAGGCCTGGGGGTGGCCTTCCCAAAGTC AGATTGCAGATCTGAGGCAGTTTCCCCCTCCCTGCGTCCCTCACTGAAACCTTGAACCCCATTGAGAAGTCCCTTTAGGGTTTCGGACGCCTCCACCTCA CCCTGGGCTGGTGCTTAAATAGAAAAAAGAAAAACAAAAACCAACTAAATCCATACCAGCCACCTCCGGGAGAGTACTCCTGGCTCCCAGTAGGAGGCGG AGAGCCAAGGGGCGTGCAAGAGAGAGGGGGCTGGGCTCCCGGGTGGCAGGAGGCCGCGGCTGCGGAGCGGCCGCCCTCGATCCGGGCGATGGAGGAGGAA GCAAGCGAGGGGGCTGGTTCCTGAGCTTCGCAATTCCTGTGTCGCCTTCTGGGCTCCCAGCCTGCCGGGTCGCATGATCCCTCCGGCCGGAGCTGGTTTT TTTGCCAGCCACCGCGAGGCCGGCTGAGTTACCGGCATCCCCGCAGCCACCTCCTCTCCCGACCTGTGATACAAAAGATCTTCCGGGGGCTGCACCTGCC TGCCTTTGCCTAAGGCGGATTTGAATAATCTTATCTTGGCTTTGGATCTTAGAAGAGAATCACTAACCAGAGACGAGACTCAGTGAGTGAGCAGGTGTTT TGGACAATGGACTGGTTGAGCCCATCCCTATTATAAAAATGTCTCAGAGCAACCGGGAGCTGGTGGTTGACTTTCTCTCCTACAAGCTTTCCCAGAAAGG ATACAGCTGGAGTCAGTTTAGTGATGTGGAAGAGAACAGGACTGAGGCCCCAGAAGGGACTGAATCGGAGATGGAGACCCCCAGTGCCATCAATGGCAAC CCATCCTGGCACCTGGCAGACAGCCCCGCGGTGAATGGAGCCACTGGCCACAGCAGCAGTTTGGATGCCCGGGAGGTGATCCCCATGGCAGCAGTAAAGC AAGCGCTGAGGGAGGCAGGCGACGAGTTTGAACTGCGGTACCGGCGGGCATTCAGTGACCTGACATCCCAGCTCCACATCACCCCAGGGACAGCATATCA GAGCTTTGAACAGGTAGTGAATGAACTCTTCCGGGATGGGGTAAACTGGGGTCGCATTGTGGCCTTTTTCTCCTTCGGCGGGGCACTGTGCGTGGAAAGC GTAGACAAGGAGATGCAGGTATTGGTGAGTCGGATCGCAGCTTGGATGGCCACTTACCTGAATGACCACCTAGAGCCTTGGATCCAGGAGAACGGCGGCT GGGATACTTTTGTGGAACTCTATGGGAACAATGCAGCAGCCGAGAGCCGAAAGGGCCAGGAACGCTTCAACCGCTGGTTCCTGACGGGCATGACTGTGGC CGGCGTGGTTCTGCTGGGCTCACTCTTCAGTCGGAAATGACCAGACACTGACCATCCACTCTACCCTCCCACCCCCTTCTCTGCTCCACCACATCCTCCG TCCAGCCGCCATTGCCACCAGGAGAACCACTACATGCAGCCCATGCCCACCTGCCCATCACAGGGTTGGGCCCAGATCTGGTCCCTTGCAGCTAGTTTTC TAGAATTTATCACACTTCTGTGAGACCCCCACACCTCAGTTCCCTTGGCCTCAGAATTCACAAAATTTCCACAAAATCTGTCCAAAGGAGGCTGGCAGGT ATGGAAGGGTTTGTGGCTGGGGGCAGGAGGGCCCTACCTGATTGGTGCAACCCTTACCCCTTAGCCTCCCTGAAAATGTTTTTCTGCCAGGGAGCTTGAA AGTTTTCAGAACCTCTTCCCCAGAAAGGAGACTAGATTGCCTTTGTTTTGATGTTTGTGGCCTCAGAATTGATCATTTTCCCCCCACTCTCCCCACACTA ACCTGGGTTCCCTTTCCTTCCATCCCTACCCCCTAAGAGCCATTTAGGGGCCACTTTTGACTAGGGATTCAGGCTGCTTGGGATAAAGATGCAAGGACCA GGACTCCCTCCTCACCTCTGGACTGGCTAGAGTCCTCACTCCCAGTCCAAATGTCCTCCAGAAGCCTCTGGCTAGAGGCCAGCCCCACCCAGGAGGGAGG GGGCTATAGCTACAGGAAGCACCCCATGCCAAAGCTAGGGTGGCCCTTGCAGTTCAGCACCACCCTAGTCCCTTCCCCTCCCTGGCTCCCATGACCATAC TGAGGGACCAACTGGGCCCAAGACAGATGCCCCAGAGCTGTTTATGGCCTCAGCTGCCTCACTTCCTACAAGAGCAGCCTGTGGCATCTTTGCCTTGGGC TGCTCCTCATGGTGGGTTCAGGGGACTCAGCCCTGAGGTGAAAGGGAGCTATCAGGAACAGCTATGGGAGCCCCAGGGTCTTCCCTACCTCAGGCAGGAA GGGCAGGAAGGAGAGCCTGCTGCATGGGGTGGGGTAGGGCTGACTAGAAGGGCCAGTCCTGCCTGGCCAGGCAGATCTGTGCCCCATGCCTGTCCAGCCT GGGCAGCCAGGCTGCCAAGGCCAGAGTGGCCTGGCCAGGAGCTCTTCAGGCCTCCCTCTCTCTTCTGCTCCACCCTTGGCCTGTCTCATCCCCAGGGGTC CCAGCCACCCCGGGCTCTCTGCTGTACATATTTGAGACTAGTTTTTATTCCTTGTGAAGATGATATACTATTTTTGTTAAGCGTGTCTGTATTTATGTGT GAGGAGCTGCTGGCTTGCAGTGCGCGTGCACGTGGAGAGCTGGTGCCCGGAGATTGGACGGCCTGATGCTCCCTCCCCTGCCCTGGTCCAGGGAAGCTGG CCGAGGGTCCTGGCTCCTGAGGGGCATCTGCCCCTCCCCCAACCCCCACCCCACACTTGTTCCAGCTCTTTGAAATAGTCTGTGTGAAGGTGAAAGTGCA GTTCAGTAATAAACTGTGTTTACTCAGTGAACAAAGAGCC

BCL2L1.u.f.5 (forward primer)
BCL2L1.u.r.5 (reverse primer)
Intron retention

Frame 0

GCAGADRRGRGPSSQEGLGGAPGGGRLPSNGAV ARRVPGLVSSRSR*AAAGPPWAPERCSPRPRSPP GGARKPLWACPQENVVSAVGPSSRPRPLFLT*G EAQRLTLTQSLCRAPAAIVSGRGMEDPAIPNCH VLGLWGIQSKPAAFVGGLRPSTSQTGLGVAFPKS DCRSEAVSPSLRPSLKP*TPLRSPFRVSDASTS PWAGA*IEKRKTKTN*IHTSHLRESTPGSQ*EA ESQGACKREGAGLPGGRRPRLRSGRPRSGRWRRK QARGLVPELRNSCVAFWAPSLPGRMIPPAGAGF FASHREAG*VTGIPAATSSPDL*YKRSSGGCTC LPLPKADLNNLILALDLRRESLTRDETQ*VSRCF GQWTG*AHPYYKNVSEQPGAGG*LSLLQAFPER IQLESV**CGREQD*GPRRD*IGDGDPQCHQWQ PILAPGRQPRGEWSHWPQQQFGCPGGDPHGSSKA SAEGGRRRV*TAVPAGIQ*PDIPAPHHPRDSIS EL*TGSE*TLPGWGKLGSHCGLFLLRRGTVRGK RRQGDAGIGESDRSLDGHLPE*PPRALDPGERRL GYFCGTLWEQCSSREPKGPGTLQPLVPDGHDCG RRGSAGLTLQSEMTRH*PSTLPSHPLLCSTTSS VQPPLPPGEPLHAAHAHLPITGLGPDLVPCS*FS RIYHTSVRPPHLSSLGLRIHKISTKSVQRRLAG MEGFVAGGRRALPDWCNPYPLASLKMFFCQGA* KFSEPLPQKGD*IAFVLMFVASELIIFPPLSPH* PGFPFLPSLPPKSHLGATFD*GFRLLGIKMQGP GLPPHLWTG*SPHSQSKCPPEASG*RPAPPRRE GAIATGSTPCQS*GGPCSSAPP*SLPLPGSHDHT EGPTGPKTDAPELFMASAASLPTRAACGIFALG CSSWWVQGTQP*GERELSGTAMGAPGSSLPQAG RAGRRACCMGWGRAD*KGQSCLARQICAPCLSSL GSQAAKARVAWPGALQASLSLLLHPWPVSSPGV PATPGSLLYIFETSFYSL*R*YTIFVKRVCIYV *GAAGLQCACTWRAGARRLDGLMLPPLPWSREAG RGSWLLRGICPSPNPHPTLVPAL*NSLCEGESA VQ**TVFTQ*TKS

Frame 1

AALGRTAGGEAPPLRKV*GAPPGEGGCLATGRW LGGYPA**AREAARPQPAHPGLRRGAAPGPGAL PGAPESHFGPVPRKTWSQLWGRRAGLDPSS*PEE RPSASPSPSLCAGRRRPLCPGGEWRTRQSPTAT FWAFGEFRANQRHLLGVSGLQHHRQAWGWPSQS QIADLRQFPPPCVPH*NLEPH*EVPLGFRTPPPH PGLVLK*KKEKQKPTKSIPATSGRVLLAPSRRR RAKGRARERGLGSRVAGGRGCGAAALDPGDGGG SKRGGWFLSFAIPVSPSGLPACRVA*SLRPELVF LPATARPAELPASPQPPPLPTCDTKDLPGAAPA CLCLRRI*IILSWLWILEENH*PETRLSE*AGV LDNGLVEPIPIIKMSQSNRELVVDFLSYKLSQKG YSWSQFSDVEENRTEAPEGTESEMETPSAINGN PSWHLADSPAVNGATGHSSSLDAREVIPMAAVK QALREAGDEFELRYRRAFSDLTSQLHITPGTAYQ SFEQVVNELFRDGVNWGRIVAFFSFGGALCVES VDKEMQVLVSRIAAWMATYLNDHLEPWIQENGG WDTFVELYGNNAAAESRKGQERFNRWFLTGMTVA GVVLLGSLFSRK*PDTDHPLYPPTPFSAPPHPP SSRHCHQENHYMQPMPTCPSQGWAQIWSLAASF LEFITLL*DPHTSVPLASEFTKFPQNLSKGGWQV WKGLWLGAGGPYLIGATLTP*PP*KCFSARELE SFQNLFPRKETRLPLF*CLWPQN*SFSPHSPHT NLGSLSFHPYPLRAI*GPLLTRDSGCLG*RCKDQ DSLLTSGLARVLTPSPNVLQKPLARGQPHPGGR GL*LQEAPHAKARVALAVQHHPSPFPSLAPMTI LRDQLGPRQMPQSCLWPQLPHFLQEQPVASLPWA APHGGFRGLSPEVKGSYQEQLWEPQGLPYLRQE GQEGEPAAWGGVGLTRRASPAWPGRSVPHACPA WAARLPRPEWPGQELFRPPSLFCSTLGLSHPQGS QPPRALCCTYLRLVFIPCEDDILFLLSVSVFMC EELLACSARARGELVPGDWTA*CSLPCPGPGKL AEGPGS*GASAPPPTPTPHLFQLFEIVCVKVKVQ FSNKLCLLSEQRA

Frame 2

LRWGGPPGARPLLSGRSRGRPRGRAVA*QRGGG SAGTRPSELEKPLGRSRPTLGSGEVQPPAPEPS RGRQKATLGLSPGKRGLSCGAVEQASTPLPDLR RGPAPHPHPVFVQGAGGHCVRAGNGGPGNPQLPR SGPLGNSEQTSGICWGSPAFNITDRPGGGLPKV RLQI*GSFPLPASLTETLNPIEKSL*GFGRLHL TLGWCLNRKKKNKNQLNPYQPPPGEYSWLPVGGG EPRGVQERGGWAPGWQEAAAAERPPSIRAMEEE ASEGAGS*ASQFLCRLLGSQPAGSHDPSGRSWF FCQPPRGRLSYRHPRSHLLSRPVIQKIFRGLHLP AFA*GGFE*SYLGFGS*KRITNQRRDSVSEQVF WTMDWLSPSLL*KCLRATGSWWLTFSPTSFPRK DTAGVSLVMWKRTGLRPQKGLNRRWRPPVPSMAT HPGTWQTAPR*MEPLATAAVWMPGR*SPWQQ*S KR*GRQATSLNCGTGGHSVT*HPSSTSPQGQHI RALNR**MNSSGMG*TGVALWPFSPSAGHCAWKA *TRRCRYW*VGSQLGWPLT*MTT*SLGSRRTAA GILLWNSMGTMQQPRAERARNASTAGS*RA*LW PAWFCWAHSSVGNDQTLTIHSTLPPPSLLHHILR PAAIATRRTTTCSPCPPAHHRVGPRSGPLQLVF *NLSHFCETPTPQFPWPQNSQNFHKICPKEAGR YGRVCGWGQEGPT*LVQPLPLSLPENVFLPGSLK VFRTSSPERRLDCLCFDVCGLRIDHFPPTLPTL TWVPFPSIPTP*EPFRGHF*LGIQAAWDKDART RTPSSPLDWLESSLPVQMSSRSLWLEASPTQEGG GYSYRKHPMPKLGWPLQFSTTLVPSPPWLP*PY *GTNWAQDRCPRAVYGLSCLTSYKSSLWHLCLG LLLMVGSGDSALR*KGAIRNSYGSPRVFPTSGRK GRKESLLHGVG*G*LEGPVLPGQADLCPMPVQP GQPGCQGQSGLARSSSGLPLSSAPPLACLIPRG PSHPGLSAVHI*D*FLFLVKMIYYFC*ACLYLCV RSCWLAVRVHVESWCPEIGRPDAPSPALVQGSW PRVLAPEGHLPLPQPPPHTCSSSLK*SV*R*KC SSVINCVYSVNKE

Sequence BCL2L1.shed2.aAug05

GGAGGAAGCAAGCGAGGGGGCTGGTTCCTGAGCTTCGCAATTCCTGTGTCGCCTTCTGGGCTCCCAGCCTGCCGGGTCGCATGATCCCTCCGGCCGGAGC TGGTTTTTTTGCCAGCCACCGCGAGGCCGGCTGAGTTACCGGCATCCCCGCAGCCACCTCCTCTCCCGACCTGTGATACAAAAGATCTTCCGGGGGCTGC ACCTGCCTGCCTTTGCCTAAGGCGGATTTGAATGTAGGTGGTGCGGGGGAGCGGGAGTGGGGCGGGGGGGACTGCCCAGGGAGTGACTTTCCGAGGAAGG CATTTCGGAGAAGACGGGGGTAGAAAAGGCTGGTGGGAGATTCAGAGTCCACTGGTGCTTTCGATTTGACTTAAGTGAAGTATCTTGGAACCTAGACCCA GACCTTCGTAAGACCCACAAAGAAACCAGTTCTGGTACCTGGAGGGGGAATGGAATTTTTAGGGTAAATGGCATGCATATTAATTATTTTTTTTTCCTGA AGCTCTTTCTCTCCCTTCAGAATCTTATCTTGGCTTTGGATCTTAGAAGAGAATCACTAACCAGAGACGAGACTCAGTGAGTGAGCAGGTGTTTTGGACA ATGGACTGGTTGAGCCCATCCCTATTATAAAAATGTCTCAGAGCAACCGGGAGCTGGTGGTTGACTTTCTCTCCTACAAGCTTTCCCAGAAAGGATACAG CTGGAGTCAGTTTAGTGATGTGGAAGAGAACAGGACTGAGGCCCCAGAAGGGACTGAATCGGAGATGGAGACCCCCAGTGCCATCAATGGCAACCCATCC TGGCACCTGGCAGACAGCCCCGCGGTGAATGGAGCCACTGGCCACAGCAGCAGTTTGGATGCCCGGGAGGTGATCCCCATGGCAGCAGTAAAGCAAGCGC TGAGGGAGGCAGGCGACGAGTTTGAACTGCGGTACCGGCGGGCATTCAGTGACCTGACATCCCAGCTCCACATCACCCCAGGGACAGCATATCAGAGCTT TGAACAGGTAGTGAATGAACTCTTCCGGGATGGGGTAAACTGGGGTCGCATTGTGGCCTTTTTCTCCTTCGGCGGGGCACTGTGCGTGGAAAGCGTAGAC AAGGAGATGCAGGTATTGGTGAGTCGGATCGCAGCTTGGATGGCCACTTACCTGAATGACCACCTAGAGCCTTGGATCCAGGAGAACGGCGGCTGGGTAA GAACC

BCL2L1.u.f.5 (forward primer)
BCL2L1.u.r.5 (reverse primer)
Intron retention

Frame 0

GGSKRGGWFLSFAIPVSPSGLPACRVA*SLRPE LVFLPATARPAELPASPQPPPLPTCDTKDLPGAA PACLCLRRI*M*VVRGSGSGAGGTAQGVTFRGR HFGEDGGRKGWWEIQSPLVLSI*LK*SILEPRP RPS*DPQRNQFWYLEGEWNF*GKWHAY*LFFFPE ALSLPSESYLGFGS*KRITNQRRDSVSEQVFWT MDWLSPSLL*KCLRATGSWWLTFSPTSFPRKDT AGVSLVMWKRTGLRPQKGLNRRWRPPVPSMATHP GTWQTAPR*MEPLATAAVWMPGR*SPWQQ*SKR *GRQATSLNCGTGGHSVT*HPSSTSPQGQHIRA LNR**MNSSGMG*TGVALWPFSPSAGHCAWKA*T RRCRYW*VGSQLGWPLT*MTT*SLGSRRTAAG* E

Frame 1

EEASEGAGS*ASQFLCRLLGSQPAGSHDPSGRS WFFCQPPRGRLSYRHPRSHLLSRPVIQKIFRGL HLPAFA*GGFECRWCGGAGVGRGGLPRE*LSEEG ISEKTGVEKAGGRFRVHWCFRFDLSEVSWNLDP DLRKTHKETSSGTWRGNGIFRVNGMHINYFFFL KLFLSLQNLILALDLRRESLTRDETQ*VSRCFGQ WTG*AHPYYKNVSEQPGAGG*LSLLQAFPERIQ LESV**CGREQD*GPRRD*IGDGDPQCHQWQPI LAPGRQPRGEWSHWPQQQFGCPGGDPHGSSKASA EGGRRRV*TAVPAGIQ*PDIPAPHHPRDSISEL *TGSE*TLPGWGKLGSHCGLFLLRRGTVRGKRR QGDAGIGESDRSLDGHLPE*PPRALDPGERRLGK N

Frame 2

RKQARGLVPELRNSCVAFWAPSLPGRMIPPAGA GFFASHREAG*VTGIPAATSSPDL*YKRSSGGC TCLPLPKADLNVGGAGEREWGGGDCPGSDFPRK AFRRRRG*KRLVGDSESTGAFDLT*VKYLGT*TQ TFVRPTKKPVLVPGGGMEFLG*MACILIIFFS* SSFSPFRILSWLWILEENH*PETRLSE*AGVLD NGLVEPIPIIKMSQSNRELVVDFLSYKLSQKGYS WSQFSDVEENRTEAPEGTESEMETPSAINGNPS WHLADSPAVNGATGHSSSLDAREVIPMAAVKQA LREAGDEFELRYRRAFSDLTSQLHITPGTAYQSF EQVVNELFRDGVNWGRIVAFFSFGGALCVESVD KEMQVLVSRIAAWMATYLNDHLEPWIQENGGWV RT