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Sequence BCL2L1.jAug05
GGAGGAAGCAAGCGAGGGGGCTGGTTCCTGAGCTTCGCAATTCCTGTGTCGCCTTCTGGGCTCCCAGCCTGCCGGGTCGCATGATCCCTCCGGCCGGAGCTGGTTTTTTTGCCAGCCACCGCGAGGCCGGCTGAGTTACCGGCATCCCCGCAGCCACCTCCTCTCCCGACCTGTGATACAAAAGATCTTCCGGGGGCTGC
ACCTGCCTGCCTTTGCCTAAGGCGGATTTGAATGTAGGTGGTGCGGGGGAGCGGGAGTGGGGCGGGGGGGACTGCCCAGGGAGTGACTTTCCGAGGAAGG
CATTTCGGAGAAGACGGGGGTAGAAAAGGCTGGTGGGAGATTCAGAGTCCACTGGTGCTTTCGATTTGACTTAAGTGAAGTATCTTGGAACCTAGACCCA
GACCTTCCTCTTTCTCTCCCTTCAGAATCTTATCTTGGCTTTGGATCTTAGAAGAGAATCACTAACCAGAGACGAGACTCAGTGAGTGAGCAGGTGTTTT
GGACAATGGACTGGTTGAGCCCATCCCTATTATAAAAATGTCTCAGAGCAACCGGGAGCTGGTGGTTGACTTTCTCTCCTACAAGCTTTCCCAGAAAGGA
TACAGCTGGAGTCAGTTTAGTGATGTGGAAGAGAACAGGACTGAGGCCCCAGAAGGGACTGAATCGGAGATGGAGACCCCCAGTGCCATCAATGGCAACC
CATCCTGGCACCTGGCAGACAGCCCCGCGGTGAATGGAGCCACTGGCCACAGCAGCAGTTTGGATGCCCGGGAGGTGATCCCCATGGCAGCAGTAAAGCA
AGCGCTGAGGGAGGCAGGCGACGAGTTTGAACTGCGGTACCGGCGGGCATTCAGTGACCTGACATCCCAGCTCCACATCACCCCAGGGACAGCATATCAG
AGCTTTGAACAGGTAGTGAATGAACTCTTCCGGGATGGGGTAAACTGGGGTCGCATTGTGGCCTTTTTCTCCTTCGGCGGGGCACTGTGCGTGGAAAGCG
TAGACAAGGAGATGCAGGTATTGGTGAGTCGGATCGCAGCTTGGATGGCCACTTACCTGAATGACCACCTAGAGCCTTGGATCCAGGAGAACGGCGGCTG
GGTAAGAACC
- BCL2L1.u.f.5 (forward primer)
- BCL2L1.u.r.5 (reverse primer)
- Intron retention
Frame 0
GGSKRGGWFLSFAIPVSPSGLPACRVA*SLRPELVFLPATARPAELPASPQPPPLPTCDTKDLPGAA
PACLCLRRI*M*VVRGSGSGAGGTAQGVTFRGR
HFGEDGGRKGWWEIQSPLVLSI*LK*SILEPRP
RPSSFSPFRILSWLWILEENH*PETRLSE*AGVL
DNGLVEPIPIIKMSQSNRELVVDFLSYKLSQKG
YSWSQFSDVEENRTEAPEGTESEMETPSAINGN
PSWHLADSPAVNGATGHSSSLDAREVIPMAAVKQ
ALREAGDEFELRYRRAFSDLTSQLHITPGTAYQ
SFEQVVNELFRDGVNWGRIVAFFSFGGALCVES
VDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGW
VRT
Frame 1
EEASEGAGS*ASQFLCRLLGSQPAGSHDPSGRSWFFCQPPRGRLSYRHPRSHLLSRPVIQKIFRGL
HLPAFA*GGFECRWCGGAGVGRGGLPRE*LSEEG
ISEKTGVEKAGGRFRVHWCFRFDLSEVSWNLDP
DLPLSLPSESYLGFGS*KRITNQRRDSVSEQVF
WTMDWLSPSLL*KCLRATGSWWLTFSPTSFPRKD
TAGVSLVMWKRTGLRPQKGLNRRWRPPVPSMAT
HPGTWQTAPR*MEPLATAAVWMPGR*SPWQQ*S
KR*GRQATSLNCGTGGHSVT*HPSSTSPQGQHIR
ALNR**MNSSGMG*TGVALWPFSPSAGHCAWKA
*TRRCRYW*VGSQLGWPLT*MTT*SLGSRRTAA
G*E
Frame 2
RKQARGLVPELRNSCVAFWAPSLPGRMIPPAGAGFFASHREAG*VTGIPAATSSPDL*YKRSSGGC
TCLPLPKADLNVGGAGEREWGGGDCPGSDFPRK
AFRRRRG*KRLVGDSESTGAFDLT*VKYLGT*TQ
TFLFLSLQNLILALDLRRESLTRDETQ*VSRCF
GQWTG*AHPYYKNVSEQPGAGG*LSLLQAFPER
IQLESV**CGREQD*GPRRD*IGDGDPQCHQWQP
ILAPGRQPRGEWSHWPQQQFGCPGGDPHGSSKA
SAEGGRRRV*TAVPAGIQ*PDIPAPHHPRDSIS
EL*TGSE*TLPGWGKLGSHCGLFLLRRGTVRGKR
RQGDAGIGESDRSLDGHLPE*PPRALDPGERRL
GKN
Sequence BCL2L1.shed2.aAug05
GGAGGAAGCAAGCGAGGGGGCTGGTTCCTGAGCTTCGCAATTCCTGTGTCGCCTTCTGGGCTCCCAGCCTGCCGGGTCGCATGATCCCTCCGGCCGGAGCTGGTTTTTTTGCCAGCCACCGCGAGGCCGGCTGAGTTACCGGCATCCCCGCAGCCACCTCCTCTCCCGACCTGTGATACAAAAGATCTTCCGGGGGCTGC
ACCTGCCTGCCTTTGCCTAAGGCGGATTTGAATGTAGGTGGTGCGGGGGAGCGGGAGTGGGGCGGGGGGGACTGCCCAGGGAGTGACTTTCCGAGGAAGG
CATTTCGGAGAAGACGGGGGTAGAAAAGGCTGGTGGGAGATTCAGAGTCCACTGGTGCTTTCGATTTGACTTAAGTGAAGTATCTTGGAACCTAGACCCA
GACCTTCGTAAGACCCACAAAGAAACCAGTTCTGGTACCTGGAGGGGGAATGGAATTTTTAGGGTAAATGGCATGCATATTAATTATTTTTTTTTCCTGA
AGCTCTTTCTCTCCCTTCAGAATCTTATCTTGGCTTTGGATCTTAGAAGAGAATCACTAACCAGAGACGAGACTCAGTGAGTGAGCAGGTGTTTTGGACA
ATGGACTGGTTGAGCCCATCCCTATTATAAAAATGTCTCAGAGCAACCGGGAGCTGGTGGTTGACTTTCTCTCCTACAAGCTTTCCCAGAAAGGATACAG
CTGGAGTCAGTTTAGTGATGTGGAAGAGAACAGGACTGAGGCCCCAGAAGGGACTGAATCGGAGATGGAGACCCCCAGTGCCATCAATGGCAACCCATCC
TGGCACCTGGCAGACAGCCCCGCGGTGAATGGAGCCACTGGCCACAGCAGCAGTTTGGATGCCCGGGAGGTGATCCCCATGGCAGCAGTAAAGCAAGCGC
TGAGGGAGGCAGGCGACGAGTTTGAACTGCGGTACCGGCGGGCATTCAGTGACCTGACATCCCAGCTCCACATCACCCCAGGGACAGCATATCAGAGCTT
TGAACAGGTAGTGAATGAACTCTTCCGGGATGGGGTAAACTGGGGTCGCATTGTGGCCTTTTTCTCCTTCGGCGGGGCACTGTGCGTGGAAAGCGTAGAC
AAGGAGATGCAGGTATTGGTGAGTCGGATCGCAGCTTGGATGGCCACTTACCTGAATGACCACCTAGAGCCTTGGATCCAGGAGAACGGCGGCTGGGTAA
GAACC
- BCL2L1.u.f.5 (forward primer)
- BCL2L1.u.r.5 (reverse primer)
- Intron retention
Frame 0
GGSKRGGWFLSFAIPVSPSGLPACRVA*SLRPELVFLPATARPAELPASPQPPPLPTCDTKDLPGAA
PACLCLRRI*M*VVRGSGSGAGGTAQGVTFRGR
HFGEDGGRKGWWEIQSPLVLSI*LK*SILEPRP
RPS*DPQRNQFWYLEGEWNF*GKWHAY*LFFFPE
ALSLPSESYLGFGS*KRITNQRRDSVSEQVFWT
MDWLSPSLL*KCLRATGSWWLTFSPTSFPRKDT
AGVSLVMWKRTGLRPQKGLNRRWRPPVPSMATHP
GTWQTAPR*MEPLATAAVWMPGR*SPWQQ*SKR
*GRQATSLNCGTGGHSVT*HPSSTSPQGQHIRA
LNR**MNSSGMG*TGVALWPFSPSAGHCAWKA*T
RRCRYW*VGSQLGWPLT*MTT*SLGSRRTAAG*
E
Frame 1
EEASEGAGS*ASQFLCRLLGSQPAGSHDPSGRSWFFCQPPRGRLSYRHPRSHLLSRPVIQKIFRGL
HLPAFA*GGFECRWCGGAGVGRGGLPRE*LSEEG
ISEKTGVEKAGGRFRVHWCFRFDLSEVSWNLDP
DLRKTHKETSSGTWRGNGIFRVNGMHINYFFFL
KLFLSLQNLILALDLRRESLTRDETQ*VSRCFGQ
WTG*AHPYYKNVSEQPGAGG*LSLLQAFPERIQ
LESV**CGREQD*GPRRD*IGDGDPQCHQWQPI
LAPGRQPRGEWSHWPQQQFGCPGGDPHGSSKASA
EGGRRRV*TAVPAGIQ*PDIPAPHHPRDSISEL
*TGSE*TLPGWGKLGSHCGLFLLRRGTVRGKRR
QGDAGIGESDRSLDGHLPE*PPRALDPGERRLGK
N
Frame 2
RKQARGLVPELRNSCVAFWAPSLPGRMIPPAGAGFFASHREAG*VTGIPAATSSPDL*YKRSSGGC
TCLPLPKADLNVGGAGEREWGGGDCPGSDFPRK
AFRRRRG*KRLVGDSESTGAFDLT*VKYLGT*TQ
TFVRPTKKPVLVPGGGMEFLG*MACILIIFFS*
SSFSPFRILSWLWILEENH*PETRLSE*AGVLD
NGLVEPIPIIKMSQSNRELVVDFLSYKLSQKGYS
WSQFSDVEENRTEAPEGTESEMETPSAINGNPS
WHLADSPAVNGATGHSSSLDAREVIPMAAVKQA
LREAGDEFELRYRRAFSDLTSQLHITPGTAYQSF
EQVVNELFRDGVNWGRIVAFFSFGGALCVESVD
KEMQVLVSRIAAWMATYLNDHLEPWIQENGGWV
RT
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