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Supplementary data
Tumor microenvironment associated modifications of alternative splicing
RBFOX2 and QKI dependent ASEs
QKI responsiveness of 48 RBFOX2 dependent ASEs
Transcript map
: ABI1 JPB_SKOV_Ctrl Lipo_72h
Exon
Length: 284
Transcript: NM_001012750
Length: 284
Transcript: NM_001012750
Exon
Length: 168
Transcript: NM_001012750
Length: 168
Transcript: NM_001012750
Exon
Length: 177
Transcript: NM_001012750
Length: 177
Transcript: NM_001012750
Exon
Length: 15
Transcript: NM_001012750
Length: 15
Transcript: NM_001012750
Exon
Length: 101
Transcript: NM_001012750
Length: 101
Transcript: NM_001012750
Exon
Length: 141
Transcript: NM_001012750
Length: 141
Transcript: NM_001012750
Exon
Length: 101
Transcript: NM_001012750
Length: 101
Transcript: NM_001012750
Exon
Length: 177
Transcript: NM_001012750
Length: 177
Transcript: NM_001012750
Exon
Length: 87
Transcript: NM_001012750
Length: 87
Transcript: NM_001012750
Exon
Length: 186
Transcript: NM_001012750
Length: 186
Transcript: NM_001012750
Exon
Length: 2150
Transcript: NM_001012750
Length: 2150
Transcript: NM_001012750
Intron
Length: 37441
Transcript: NM_001012750
Length: 37441
Transcript: NM_001012750
Intron
Length: 45896
Transcript: NM_001012750
Length: 45896
Transcript: NM_001012750
Intron
Length: 5975
Transcript: NM_001012750
Length: 5975
Transcript: NM_001012750
Intron
Length: 729
Transcript: NM_001012750
Length: 729
Transcript: NM_001012750
Intron
Length: 1252
Transcript: NM_001012750
Length: 1252
Transcript: NM_001012750
Intron
Length: 3533
Transcript: NM_001012750
Length: 3533
Transcript: NM_001012750
Intron
Length: 5979
Transcript: NM_001012750
Length: 5979
Transcript: NM_001012750
Intron
Length: 3320
Transcript: NM_001012750
Length: 3320
Transcript: NM_001012750
Intron
Length: 3871
Transcript: NM_001012750
Length: 3871
Transcript: NM_001012750
Intron
Length: 2852
Transcript: NM_001012750
Length: 2852
Transcript: NM_001012750
Reaction
Expected peak: 252
50.9M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
50.9M
refseq_ABI1.F3
refseq_ABI1.R3
Exon
Length: 284
Transcript: NM_001012751
Length: 284
Transcript: NM_001012751
Exon
Length: 168
Transcript: NM_001012751
Length: 168
Transcript: NM_001012751
Exon
Length: 177
Transcript: NM_001012751
Length: 177
Transcript: NM_001012751
Exon
Length: 15
Transcript: NM_001012751
Length: 15
Transcript: NM_001012751
Exon
Length: 101
Transcript: NM_001012751
Length: 101
Transcript: NM_001012751
Exon
Length: 141
Transcript: NM_001012751
Length: 141
Transcript: NM_001012751
Exon
Length: 101
Transcript: NM_001012751
Length: 101
Transcript: NM_001012751
Exon
Length: 177
Transcript: NM_001012751
Length: 177
Transcript: NM_001012751
Exon
Length: 186
Transcript: NM_001012751
Length: 186
Transcript: NM_001012751
Exon
Length: 2150
Transcript: NM_001012751
Length: 2150
Transcript: NM_001012751
Intron
Length: 37441
Transcript: NM_001012751
Length: 37441
Transcript: NM_001012751
Intron
Length: 45896
Transcript: NM_001012751
Length: 45896
Transcript: NM_001012751
Intron
Length: 5975
Transcript: NM_001012751
Length: 5975
Transcript: NM_001012751
Intron
Length: 729
Transcript: NM_001012751
Length: 729
Transcript: NM_001012751
Intron
Length: 1252
Transcript: NM_001012751
Length: 1252
Transcript: NM_001012751
Intron
Length: 3533
Transcript: NM_001012751
Length: 3533
Transcript: NM_001012751
Intron
Length: 5979
Transcript: NM_001012751
Length: 5979
Transcript: NM_001012751
Intron
Length: 7278
Transcript: NM_001012751
Length: 7278
Transcript: NM_001012751
Intron
Length: 2852
Transcript: NM_001012751
Length: 2852
Transcript: NM_001012751
Reaction
Expected peak: 165
52.4M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 165
52.4M
refseq_ABI1.F3
refseq_ABI1.R3
Exon
Length: 284
Transcript: NM_001012752
Length: 284
Transcript: NM_001012752
Exon
Length: 168
Transcript: NM_001012752
Length: 168
Transcript: NM_001012752
Exon
Length: 177
Transcript: NM_001012752
Length: 177
Transcript: NM_001012752
Exon
Length: 101
Transcript: NM_001012752
Length: 101
Transcript: NM_001012752
Exon
Length: 141
Transcript: NM_001012752
Length: 141
Transcript: NM_001012752
Exon
Length: 101
Transcript: NM_001012752
Length: 101
Transcript: NM_001012752
Exon
Length: 177
Transcript: NM_001012752
Length: 177
Transcript: NM_001012752
Exon
Length: 87
Transcript: NM_001012752
Length: 87
Transcript: NM_001012752
Exon
Length: 186
Transcript: NM_001012752
Length: 186
Transcript: NM_001012752
Exon
Length: 2150
Transcript: NM_001012752
Length: 2150
Transcript: NM_001012752
Intron
Length: 37441
Transcript: NM_001012752
Length: 37441
Transcript: NM_001012752
Intron
Length: 45896
Transcript: NM_001012752
Length: 45896
Transcript: NM_001012752
Intron
Length: 6719
Transcript: NM_001012752
Length: 6719
Transcript: NM_001012752
Intron
Length: 1252
Transcript: NM_001012752
Length: 1252
Transcript: NM_001012752
Intron
Length: 3533
Transcript: NM_001012752
Length: 3533
Transcript: NM_001012752
Intron
Length: 5979
Transcript: NM_001012752
Length: 5979
Transcript: NM_001012752
Intron
Length: 3320
Transcript: NM_001012752
Length: 3320
Transcript: NM_001012752
Intron
Length: 3871
Transcript: NM_001012752
Length: 3871
Transcript: NM_001012752
Intron
Length: 2852
Transcript: NM_001012752
Length: 2852
Transcript: NM_001012752
Reaction
Expected peak: 252
50.9M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
50.9M
refseq_ABI1.F3
refseq_ABI1.R3
Exon
Length: 284
Transcript: NM_005470
Length: 284
Transcript: NM_005470
Exon
Length: 168
Transcript: NM_005470
Length: 168
Transcript: NM_005470
Exon
Length: 177
Transcript: NM_005470
Length: 177
Transcript: NM_005470
Exon
Length: 15
Transcript: NM_005470
Length: 15
Transcript: NM_005470
Exon
Length: 101
Transcript: NM_005470
Length: 101
Transcript: NM_005470
Exon
Length: 141
Transcript: NM_005470
Length: 141
Transcript: NM_005470
Exon
Length: 101
Transcript: NM_005470
Length: 101
Transcript: NM_005470
Exon
Length: 81
Transcript: NM_005470
Length: 81
Transcript: NM_005470
Exon
Length: 177
Transcript: NM_005470
Length: 177
Transcript: NM_005470
Exon
Length: 87
Transcript: NM_005470
Length: 87
Transcript: NM_005470
Exon
Length: 186
Transcript: NM_005470
Length: 186
Transcript: NM_005470
Exon
Length: 2150
Transcript: NM_005470
Length: 2150
Transcript: NM_005470
Intron
Length: 37441
Transcript: NM_005470
Length: 37441
Transcript: NM_005470
Intron
Length: 45896
Transcript: NM_005470
Length: 45896
Transcript: NM_005470
Intron
Length: 5975
Transcript: NM_005470
Length: 5975
Transcript: NM_005470
Intron
Length: 729
Transcript: NM_005470
Length: 729
Transcript: NM_005470
Intron
Length: 1252
Transcript: NM_005470
Length: 1252
Transcript: NM_005470
Intron
Length: 3533
Transcript: NM_005470
Length: 3533
Transcript: NM_005470
Intron
Length: 1257
Transcript: NM_005470
Length: 1257
Transcript: NM_005470
Intron
Length: 4641
Transcript: NM_005470
Length: 4641
Transcript: NM_005470
Intron
Length: 3320
Transcript: NM_005470
Length: 3320
Transcript: NM_005470
Intron
Length: 3871
Transcript: NM_005470
Length: 3871
Transcript: NM_005470
Intron
Length: 2852
Transcript: NM_005470
Length: 2852
Transcript: NM_005470
Reaction
Expected peak: 252
50.9M
refseq_ABI1.F3
refseq_ABI1.R3
Expected peak: 252
50.9M
refseq_ABI1.F3
refseq_ABI1.R3
refseq_ABI1.F3
CAATGACCAGGCAGATATCTCG
CAATGACCAGGCAGATATCTCG
refseq_ABI1.R3
GCGGTGGAGTTGGACTATCA
GCGGTGGAGTTGGACTATCA