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Supplementary data
Tumor microenvironment associated modifications of alternative splicing
RBFOX2 and QKI dependent ASEs
QKI responsiveness of 48 RBFOX2 dependent ASEs
Transcript map
: CTTN JPB_SKOV_Ctrl Lipo_72h
Exon
Length: 77
Transcript: NM_005231
Length: 77
Transcript: NM_005231
Exon
Length: 97
Transcript: NM_005231
Length: 97
Transcript: NM_005231
Exon
Length: 87
Transcript: NM_005231
Length: 87
Transcript: NM_005231
Exon
Length: 74
Transcript: NM_005231
Length: 74
Transcript: NM_005231
Exon
Length: 130
Transcript: NM_005231
Length: 130
Transcript: NM_005231
Exon
Length: 111
Transcript: NM_005231
Length: 111
Transcript: NM_005231
Exon
Length: 55
Transcript: NM_005231
Length: 55
Transcript: NM_005231
Exon
Length: 111
Transcript: NM_005231
Length: 111
Transcript: NM_005231
Exon
Length: 111
Transcript: NM_005231
Length: 111
Transcript: NM_005231
Exon
Length: 111
Transcript: NM_005231
Length: 111
Transcript: NM_005231
Exon
Length: 111
Transcript: NM_005231
Length: 111
Transcript: NM_005231
Exon
Length: 56
Transcript: NM_005231
Length: 56
Transcript: NM_005231
Exon
Length: 70
Transcript: NM_005231
Length: 70
Transcript: NM_005231
Exon
Length: 149
Transcript: NM_005231
Length: 149
Transcript: NM_005231
Exon
Length: 90
Transcript: NM_005231
Length: 90
Transcript: NM_005231
Exon
Length: 178
Transcript: NM_005231
Length: 178
Transcript: NM_005231
Exon
Length: 72
Transcript: NM_005231
Length: 72
Transcript: NM_005231
Exon
Length: 1550
Transcript: NM_005231
Length: 1550
Transcript: NM_005231
Intron
Length: 6650
Transcript: NM_005231
Length: 6650
Transcript: NM_005231
Intron
Length: 1936
Transcript: NM_005231
Length: 1936
Transcript: NM_005231
Intron
Length: 133
Transcript: NM_005231
Length: 133
Transcript: NM_005231
Intron
Length: 2239
Transcript: NM_005231
Length: 2239
Transcript: NM_005231
Intron
Length: 4581
Transcript: NM_005231
Length: 4581
Transcript: NM_005231
Intron
Length: 1010
Transcript: NM_005231
Length: 1010
Transcript: NM_005231
Intron
Length: 1295
Transcript: NM_005231
Length: 1295
Transcript: NM_005231
Intron
Length: 2622
Transcript: NM_005231
Length: 2622
Transcript: NM_005231
Intron
Length: 543
Transcript: NM_005231
Length: 543
Transcript: NM_005231
Intron
Length: 959
Transcript: NM_005231
Length: 959
Transcript: NM_005231
Intron
Length: 1359
Transcript: NM_005231
Length: 1359
Transcript: NM_005231
Intron
Length: 2336
Transcript: NM_005231
Length: 2336
Transcript: NM_005231
Intron
Length: 3649
Transcript: NM_005231
Length: 3649
Transcript: NM_005231
Intron
Length: 1991
Transcript: NM_005231
Length: 1991
Transcript: NM_005231
Intron
Length: 1820
Transcript: NM_005231
Length: 1820
Transcript: NM_005231
Intron
Length: 368
Transcript: NM_005231
Length: 368
Transcript: NM_005231
Intron
Length: 1307
Transcript: NM_005231
Length: 1307
Transcript: NM_005231
Reaction
Expected peak: 234
2.5M
refseq_CTTN.F1
refseq_CTTN.R1
Expected peak: 234
2.5M
refseq_CTTN.F1
refseq_CTTN.R1
Exon
Length: 77
Transcript: NM_138565
Length: 77
Transcript: NM_138565
Exon
Length: 97
Transcript: NM_138565
Length: 97
Transcript: NM_138565
Exon
Length: 87
Transcript: NM_138565
Length: 87
Transcript: NM_138565
Exon
Length: 74
Transcript: NM_138565
Length: 74
Transcript: NM_138565
Exon
Length: 130
Transcript: NM_138565
Length: 130
Transcript: NM_138565
Exon
Length: 111
Transcript: NM_138565
Length: 111
Transcript: NM_138565
Exon
Length: 55
Transcript: NM_138565
Length: 55
Transcript: NM_138565
Exon
Length: 111
Transcript: NM_138565
Length: 111
Transcript: NM_138565
Exon
Length: 111
Transcript: NM_138565
Length: 111
Transcript: NM_138565
Exon
Length: 111
Transcript: NM_138565
Length: 111
Transcript: NM_138565
Exon
Length: 56
Transcript: NM_138565
Length: 56
Transcript: NM_138565
Exon
Length: 70
Transcript: NM_138565
Length: 70
Transcript: NM_138565
Exon
Length: 149
Transcript: NM_138565
Length: 149
Transcript: NM_138565
Exon
Length: 90
Transcript: NM_138565
Length: 90
Transcript: NM_138565
Exon
Length: 178
Transcript: NM_138565
Length: 178
Transcript: NM_138565
Exon
Length: 72
Transcript: NM_138565
Length: 72
Transcript: NM_138565
Exon
Length: 1559
Transcript: NM_138565
Length: 1559
Transcript: NM_138565
Intron
Length: 6650
Transcript: NM_138565
Length: 6650
Transcript: NM_138565
Intron
Length: 1936
Transcript: NM_138565
Length: 1936
Transcript: NM_138565
Intron
Length: 133
Transcript: NM_138565
Length: 133
Transcript: NM_138565
Intron
Length: 2239
Transcript: NM_138565
Length: 2239
Transcript: NM_138565
Intron
Length: 4581
Transcript: NM_138565
Length: 4581
Transcript: NM_138565
Intron
Length: 1010
Transcript: NM_138565
Length: 1010
Transcript: NM_138565
Intron
Length: 1295
Transcript: NM_138565
Length: 1295
Transcript: NM_138565
Intron
Length: 2622
Transcript: NM_138565
Length: 2622
Transcript: NM_138565
Intron
Length: 543
Transcript: NM_138565
Length: 543
Transcript: NM_138565
Intron
Length: 2429
Transcript: NM_138565
Length: 2429
Transcript: NM_138565
Intron
Length: 2336
Transcript: NM_138565
Length: 2336
Transcript: NM_138565
Intron
Length: 3649
Transcript: NM_138565
Length: 3649
Transcript: NM_138565
Intron
Length: 1991
Transcript: NM_138565
Length: 1991
Transcript: NM_138565
Intron
Length: 1820
Transcript: NM_138565
Length: 1820
Transcript: NM_138565
Intron
Length: 368
Transcript: NM_138565
Length: 368
Transcript: NM_138565
Intron
Length: 1307
Transcript: NM_138565
Length: 1307
Transcript: NM_138565
Reaction
Expected peak: 123
0M
refseq_CTTN.F1
refseq_CTTN.R1
Expected peak: 123
0M
refseq_CTTN.F1
refseq_CTTN.R1
refseq_CTTN.F1
ACAGACAAGACAAATGTGCCC
ACAGACAAGACAAATGTGCCC
refseq_CTTN.R1
TATCCATCCGATCCTTCTGC
TATCCATCCGATCCTTCTGC