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Supplementary data
Tumor microenvironment associated modifications of alternative splicing
RBFOX2 and QKI dependent ASEs
RBFOX2 responsiveness of 382 ACE
Transcript map
: ADNP MDA-MB-231 (2006-07-27 96hrs)
- refseq_ADNP.F1 / refseq_ADNP.R1 (CM018880 D16) : Curve | Curve set
- refseq_ADNP.F1 / refseq_ADNP.R1 (CM018884 C16) : Curve | Curve set
- refseq_ADNP.F1 / refseq_ADNP.R1 (CM018397 C15) : Curve | Curve set
- refseq_ADNP.F1 / refseq_ADNP.R1 (CM018382 C15) : Curve | Curve set
- refseq_ADNP.F1 / refseq_ADNP.R1 (CM018385 C15) : Curve | Curve set
- refseq_ADNP.F1 / refseq_ADNP.R1 (CM018388 C15) : Curve | Curve set
- refseq_ADNP.F1 / refseq_ADNP.R1 (CM018391 C16) : Curve | Curve set
- refseq_ADNP.F1 / refseq_ADNP.R1 (CM018391 C15) : Curve | Curve set
- refseq_ADNP.F1 / refseq_ADNP.R1 (CM018392 C15) : Curve | Curve set
- refseq_ADNP.F1 / refseq_ADNP.R1 (CM018394 C15) : Curve | Curve set
Exon
Length: 165
Transcript: NM_015339
Length: 165
Transcript: NM_015339
Exon
Length: 175
Transcript: NM_015339
Length: 175
Transcript: NM_015339
Exon
Length: 113
Transcript: NM_015339
Length: 113
Transcript: NM_015339
Exon
Length: 93
Transcript: NM_015339
Length: 93
Transcript: NM_015339
Exon
Length: 4167
Transcript: NM_015339
Length: 4167
Transcript: NM_015339
Intron
Length: 2000
Transcript: NM_015339
Length: 2000
Transcript: NM_015339
Intron
Length: 24649
Transcript: NM_015339
Length: 24649
Transcript: NM_015339
Intron
Length: 1779
Transcript: NM_015339
Length: 1779
Transcript: NM_015339
Intron
Length: 7504
Transcript: NM_015339
Length: 7504
Transcript: NM_015339
Reaction
Expected peak: 291
7.9M
refseq_ADNP.F1
refseq_ADNP.R1
Expected peak: 291
7.9M
refseq_ADNP.F1
refseq_ADNP.R1
Reaction
Expected peak: 291
10.8M
refseq_ADNP.F1
refseq_ADNP.R1
Expected peak: 291
10.8M
refseq_ADNP.F1
refseq_ADNP.R1
Reaction
Expected peak: 291
10M
refseq_ADNP.F1
refseq_ADNP.R1
Expected peak: 291
10M
refseq_ADNP.F1
refseq_ADNP.R1
Reaction
Expected peak: 291
8M
refseq_ADNP.F1
refseq_ADNP.R1
Expected peak: 291
8M
refseq_ADNP.F1
refseq_ADNP.R1
Reaction
Expected peak: 291
28.4M
refseq_ADNP.F1
refseq_ADNP.R1
Expected peak: 291
28.4M
refseq_ADNP.F1
refseq_ADNP.R1
Reaction
Expected peak: 291
14.1M
refseq_ADNP.F1
refseq_ADNP.R1
Expected peak: 291
14.1M
refseq_ADNP.F1
refseq_ADNP.R1
Reaction
Expected peak: 291
23.3M
refseq_ADNP.F1
refseq_ADNP.R1
Expected peak: 291
23.3M
refseq_ADNP.F1
refseq_ADNP.R1
Reaction
Expected peak: 291
21.5M
refseq_ADNP.F1
refseq_ADNP.R1
Expected peak: 291
21.5M
refseq_ADNP.F1
refseq_ADNP.R1
Reaction
Expected peak: 291
22.4M
refseq_ADNP.F1
refseq_ADNP.R1
Expected peak: 291
22.4M
refseq_ADNP.F1
refseq_ADNP.R1
Reaction
Expected peak: 291
14.3M
refseq_ADNP.F1
refseq_ADNP.R1
Expected peak: 291
14.3M
refseq_ADNP.F1
refseq_ADNP.R1
Exon
Length: 165
Transcript: NM_181442
Length: 165
Transcript: NM_181442
Exon
Length: 113
Transcript: NM_181442
Length: 113
Transcript: NM_181442
Exon
Length: 93
Transcript: NM_181442
Length: 93
Transcript: NM_181442
Exon
Length: 4167
Transcript: NM_181442
Length: 4167
Transcript: NM_181442
Intron
Length: 26824
Transcript: NM_181442
Length: 26824
Transcript: NM_181442
Intron
Length: 1779
Transcript: NM_181442
Length: 1779
Transcript: NM_181442
Intron
Length: 7504
Transcript: NM_181442
Length: 7504
Transcript: NM_181442
Reaction
Expected peak: 116
28.1M
refseq_ADNP.F1
refseq_ADNP.R1
Expected peak: 116
28.1M
refseq_ADNP.F1
refseq_ADNP.R1
Reaction
Expected peak: 116
20.8M
refseq_ADNP.F1
refseq_ADNP.R1
Expected peak: 116
20.8M
refseq_ADNP.F1
refseq_ADNP.R1
Reaction
Expected peak: 116
27.6M
refseq_ADNP.F1
refseq_ADNP.R1
Expected peak: 116
27.6M
refseq_ADNP.F1
refseq_ADNP.R1
Reaction
Expected peak: 116
21.3M
refseq_ADNP.F1
refseq_ADNP.R1
Expected peak: 116
21.3M
refseq_ADNP.F1
refseq_ADNP.R1
Reaction
Expected peak: 116
81M
refseq_ADNP.F1
refseq_ADNP.R1
Expected peak: 116
81M
refseq_ADNP.F1
refseq_ADNP.R1
Reaction
Expected peak: 116
35.7M
refseq_ADNP.F1
refseq_ADNP.R1
Expected peak: 116
35.7M
refseq_ADNP.F1
refseq_ADNP.R1
Reaction
Expected peak: 116
41.5M
refseq_ADNP.F1
refseq_ADNP.R1
Expected peak: 116
41.5M
refseq_ADNP.F1
refseq_ADNP.R1
Reaction
Expected peak: 116
47.1M
refseq_ADNP.F1
refseq_ADNP.R1
Expected peak: 116
47.1M
refseq_ADNP.F1
refseq_ADNP.R1
Reaction
Expected peak: 116
37.3M
refseq_ADNP.F1
refseq_ADNP.R1
Expected peak: 116
37.3M
refseq_ADNP.F1
refseq_ADNP.R1
Reaction
Expected peak: 116
23.1M
refseq_ADNP.F1
refseq_ADNP.R1
Expected peak: 116
23.1M
refseq_ADNP.F1
refseq_ADNP.R1
refseq_ADNP.R1
ACAGTATTCCAACCCAATGTCAC
ACAGTATTCCAACCCAATGTCAC
refseq_ADNP.F1
CCTCGAGGCCGAGTCAAG
CCTCGAGGCCGAGTCAAG