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Supplementary data
Tumor microenvironment associated modifications of alternative splicing
RBFOX2 and QKI dependent ASEs
RBFOX2 responsiveness of 382 ACE
Transcript map
: ANKRD12 MDA-MB-231 (2006-07-27 96hrs)
Exon
Length: 206
Transcript: NM_001083625
Length: 206
Transcript: NM_001083625
Exon
Length: 138
Transcript: NM_001083625
Length: 138
Transcript: NM_001083625
Exon
Length: 148
Transcript: NM_001083625
Length: 148
Transcript: NM_001083625
Exon
Length: 147
Transcript: NM_001083625
Length: 147
Transcript: NM_001083625
Exon
Length: 201
Transcript: NM_001083625
Length: 201
Transcript: NM_001083625
Exon
Length: 143
Transcript: NM_001083625
Length: 143
Transcript: NM_001083625
Exon
Length: 148
Transcript: NM_001083625
Length: 148
Transcript: NM_001083625
Exon
Length: 4721
Transcript: NM_001083625
Length: 4721
Transcript: NM_001083625
Exon
Length: 99
Transcript: NM_001083625
Length: 99
Transcript: NM_001083625
Exon
Length: 144
Transcript: NM_001083625
Length: 144
Transcript: NM_001083625
Exon
Length: 96
Transcript: NM_001083625
Length: 96
Transcript: NM_001083625
Exon
Length: 4268
Transcript: NM_001083625
Length: 4268
Transcript: NM_001083625
Intron
Length: 45416
Transcript: NM_001083625
Length: 45416
Transcript: NM_001083625
Intron
Length: 13031
Transcript: NM_001083625
Length: 13031
Transcript: NM_001083625
Intron
Length: 12958
Transcript: NM_001083625
Length: 12958
Transcript: NM_001083625
Intron
Length: 2780
Transcript: NM_001083625
Length: 2780
Transcript: NM_001083625
Intron
Length: 4973
Transcript: NM_001083625
Length: 4973
Transcript: NM_001083625
Intron
Length: 4951
Transcript: NM_001083625
Length: 4951
Transcript: NM_001083625
Intron
Length: 32211
Transcript: NM_001083625
Length: 32211
Transcript: NM_001083625
Intron
Length: 4858
Transcript: NM_001083625
Length: 4858
Transcript: NM_001083625
Intron
Length: 11635
Transcript: NM_001083625
Length: 11635
Transcript: NM_001083625
Intron
Length: 3881
Transcript: NM_001083625
Length: 3881
Transcript: NM_001083625
Intron
Length: 1296
Transcript: NM_001083625
Length: 1296
Transcript: NM_001083625
Reaction
Expected peak: 250
50.4M
rs.ANKRD12.F1
rs.ANKRD12.R1
Expected peak: 250
50.4M
rs.ANKRD12.F1
rs.ANKRD12.R1
Exon
Length: 206
Transcript: NM_015208
Length: 206
Transcript: NM_015208
Exon
Length: 138
Transcript: NM_015208
Length: 138
Transcript: NM_015208
Exon
Length: 148
Transcript: NM_015208
Length: 148
Transcript: NM_015208
Exon
Length: 69
Transcript: NM_015208
Length: 69
Transcript: NM_015208
Exon
Length: 147
Transcript: NM_015208
Length: 147
Transcript: NM_015208
Exon
Length: 201
Transcript: NM_015208
Length: 201
Transcript: NM_015208
Exon
Length: 143
Transcript: NM_015208
Length: 143
Transcript: NM_015208
Exon
Length: 148
Transcript: NM_015208
Length: 148
Transcript: NM_015208
Exon
Length: 4721
Transcript: NM_015208
Length: 4721
Transcript: NM_015208
Exon
Length: 99
Transcript: NM_015208
Length: 99
Transcript: NM_015208
Exon
Length: 144
Transcript: NM_015208
Length: 144
Transcript: NM_015208
Exon
Length: 96
Transcript: NM_015208
Length: 96
Transcript: NM_015208
Exon
Length: 4268
Transcript: NM_015208
Length: 4268
Transcript: NM_015208
Intron
Length: 45416
Transcript: NM_015208
Length: 45416
Transcript: NM_015208
Intron
Length: 13031
Transcript: NM_015208
Length: 13031
Transcript: NM_015208
Intron
Length: 8777
Transcript: NM_015208
Length: 8777
Transcript: NM_015208
Intron
Length: 4112
Transcript: NM_015208
Length: 4112
Transcript: NM_015208
Intron
Length: 2780
Transcript: NM_015208
Length: 2780
Transcript: NM_015208
Intron
Length: 4973
Transcript: NM_015208
Length: 4973
Transcript: NM_015208
Intron
Length: 4951
Transcript: NM_015208
Length: 4951
Transcript: NM_015208
Intron
Length: 32211
Transcript: NM_015208
Length: 32211
Transcript: NM_015208
Intron
Length: 4858
Transcript: NM_015208
Length: 4858
Transcript: NM_015208
Intron
Length: 11635
Transcript: NM_015208
Length: 11635
Transcript: NM_015208
Intron
Length: 3881
Transcript: NM_015208
Length: 3881
Transcript: NM_015208
Intron
Length: 1296
Transcript: NM_015208
Length: 1296
Transcript: NM_015208
Reaction
Expected peak: 319
6.6M
rs.ANKRD12.F1
rs.ANKRD12.R1
Expected peak: 319
6.6M
rs.ANKRD12.F1
rs.ANKRD12.R1
rs.ANKRD12.F1
TGCATCCTACAGCAAAACTCCA
TGCATCCTACAGCAAAACTCCA
rs.ANKRD12.R1
AAGAAGTGCCATCTGTTTTCGC
AAGAAGTGCCATCTGTTTTCGC