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Supplementary data
RBFOX2 enforces the mesenchymal splicing signature in normal and cancer tissues
1. Initial RefSeq screen / epithelium and mesenchyme (fetal colon)
Transcript map
: A2BP1 epithelium
Exon
Length: 862
Transcript: NM_018723
Length: 862
Transcript: NM_018723
Exon
Length: 63
Transcript: NM_018723
Length: 63
Transcript: NM_018723
Exon
Length: 48
Transcript: NM_018723
Length: 48
Transcript: NM_018723
Exon
Length: 42
Transcript: NM_018723
Length: 42
Transcript: NM_018723
Exon
Length: 243
Transcript: NM_018723
Length: 243
Transcript: NM_018723
Exon
Length: 144
Transcript: NM_018723
Length: 144
Transcript: NM_018723
Exon
Length: 54
Transcript: NM_018723
Length: 54
Transcript: NM_018723
Exon
Length: 93
Transcript: NM_018723
Length: 93
Transcript: NM_018723
Exon
Length: 61
Transcript: NM_018723
Length: 61
Transcript: NM_018723
Exon
Length: 54
Transcript: NM_018723
Length: 54
Transcript: NM_018723
Exon
Length: 81
Transcript: NM_018723
Length: 81
Transcript: NM_018723
Exon
Length: 133
Transcript: NM_018723
Length: 133
Transcript: NM_018723
Exon
Length: 40
Transcript: NM_018723
Length: 40
Transcript: NM_018723
Exon
Length: 65
Transcript: NM_018723
Length: 65
Transcript: NM_018723
Exon
Length: 76
Transcript: NM_018723
Length: 76
Transcript: NM_018723
Exon
Length: 222
Transcript: NM_018723
Length: 222
Transcript: NM_018723
Intron
Length: 297002
Transcript: NM_018723
Length: 297002
Transcript: NM_018723
Intron
Length: 337545
Transcript: NM_018723
Length: 337545
Transcript: NM_018723
Intron
Length: 397406
Transcript: NM_018723
Length: 397406
Transcript: NM_018723
Intron
Length: 466049
Transcript: NM_018723
Length: 466049
Transcript: NM_018723
Intron
Length: 61387
Transcript: NM_018723
Length: 61387
Transcript: NM_018723
Intron
Length: 7326
Transcript: NM_018723
Length: 7326
Transcript: NM_018723
Intron
Length: 8248
Transcript: NM_018723
Length: 8248
Transcript: NM_018723
Intron
Length: 1729
Transcript: NM_018723
Length: 1729
Transcript: NM_018723
Intron
Length: 9853
Transcript: NM_018723
Length: 9853
Transcript: NM_018723
Intron
Length: 23264
Transcript: NM_018723
Length: 23264
Transcript: NM_018723
Intron
Length: 23131
Transcript: NM_018723
Length: 23131
Transcript: NM_018723
Intron
Length: 10981
Transcript: NM_018723
Length: 10981
Transcript: NM_018723
Intron
Length: 11805
Transcript: NM_018723
Length: 11805
Transcript: NM_018723
Intron
Length: 32217
Transcript: NM_018723
Length: 32217
Transcript: NM_018723
Intron
Length: 1491
Transcript: NM_018723
Length: 1491
Transcript: NM_018723
Reaction
Expected peak: 112
1.8M
refseq_A2BP1.F3
refseq_A2BP1.R3
Expected peak: 112
1.8M
refseq_A2BP1.F3
refseq_A2BP1.R3
Exon
Length: 339
Transcript: NM_145891
Length: 339
Transcript: NM_145891
Exon
Length: 243
Transcript: NM_145891
Length: 243
Transcript: NM_145891
Exon
Length: 144
Transcript: NM_145891
Length: 144
Transcript: NM_145891
Exon
Length: 54
Transcript: NM_145891
Length: 54
Transcript: NM_145891
Exon
Length: 93
Transcript: NM_145891
Length: 93
Transcript: NM_145891
Exon
Length: 61
Transcript: NM_145891
Length: 61
Transcript: NM_145891
Exon
Length: 54
Transcript: NM_145891
Length: 54
Transcript: NM_145891
Exon
Length: 81
Transcript: NM_145891
Length: 81
Transcript: NM_145891
Exon
Length: 133
Transcript: NM_145891
Length: 133
Transcript: NM_145891
Exon
Length: 43
Transcript: NM_145891
Length: 43
Transcript: NM_145891
Exon
Length: 65
Transcript: NM_145891
Length: 65
Transcript: NM_145891
Exon
Length: 76
Transcript: NM_145891
Length: 76
Transcript: NM_145891
Exon
Length: 1875
Transcript: NM_145891
Length: 1875
Transcript: NM_145891
Intron
Length: 185059
Transcript: NM_145891
Length: 185059
Transcript: NM_145891
Intron
Length: 61387
Transcript: NM_145891
Length: 61387
Transcript: NM_145891
Intron
Length: 7326
Transcript: NM_145891
Length: 7326
Transcript: NM_145891
Intron
Length: 8248
Transcript: NM_145891
Length: 8248
Transcript: NM_145891
Intron
Length: 1729
Transcript: NM_145891
Length: 1729
Transcript: NM_145891
Intron
Length: 9853
Transcript: NM_145891
Length: 9853
Transcript: NM_145891
Intron
Length: 23264
Transcript: NM_145891
Length: 23264
Transcript: NM_145891
Intron
Length: 23131
Transcript: NM_145891
Length: 23131
Transcript: NM_145891
Intron
Length: 17609
Transcript: NM_145891
Length: 17609
Transcript: NM_145891
Intron
Length: 5174
Transcript: NM_145891
Length: 5174
Transcript: NM_145891
Intron
Length: 32217
Transcript: NM_145891
Length: 32217
Transcript: NM_145891
Intron
Length: 1491
Transcript: NM_145891
Length: 1491
Transcript: NM_145891
Reaction
Expected peak: 112
1.8M
refseq_A2BP1.F3
refseq_A2BP1.R3
Expected peak: 112
1.8M
refseq_A2BP1.F3
refseq_A2BP1.R3
Exon
Length: 339
Transcript: NM_145892
Length: 339
Transcript: NM_145892
Exon
Length: 243
Transcript: NM_145892
Length: 243
Transcript: NM_145892
Exon
Length: 144
Transcript: NM_145892
Length: 144
Transcript: NM_145892
Exon
Length: 54
Transcript: NM_145892
Length: 54
Transcript: NM_145892
Exon
Length: 93
Transcript: NM_145892
Length: 93
Transcript: NM_145892
Exon
Length: 61
Transcript: NM_145892
Length: 61
Transcript: NM_145892
Exon
Length: 54
Transcript: NM_145892
Length: 54
Transcript: NM_145892
Exon
Length: 81
Transcript: NM_145892
Length: 81
Transcript: NM_145892
Exon
Length: 133
Transcript: NM_145892
Length: 133
Transcript: NM_145892
Exon
Length: 43
Transcript: NM_145892
Length: 43
Transcript: NM_145892
Exon
Length: 65
Transcript: NM_145892
Length: 65
Transcript: NM_145892
Exon
Length: 76
Transcript: NM_145892
Length: 76
Transcript: NM_145892
Exon
Length: 1797
Transcript: NM_145892
Length: 1797
Transcript: NM_145892
Intron
Length: 185059
Transcript: NM_145892
Length: 185059
Transcript: NM_145892
Intron
Length: 61387
Transcript: NM_145892
Length: 61387
Transcript: NM_145892
Intron
Length: 7326
Transcript: NM_145892
Length: 7326
Transcript: NM_145892
Intron
Length: 8248
Transcript: NM_145892
Length: 8248
Transcript: NM_145892
Intron
Length: 1729
Transcript: NM_145892
Length: 1729
Transcript: NM_145892
Intron
Length: 9853
Transcript: NM_145892
Length: 9853
Transcript: NM_145892
Intron
Length: 23264
Transcript: NM_145892
Length: 23264
Transcript: NM_145892
Intron
Length: 23131
Transcript: NM_145892
Length: 23131
Transcript: NM_145892
Intron
Length: 17609
Transcript: NM_145892
Length: 17609
Transcript: NM_145892
Intron
Length: 5174
Transcript: NM_145892
Length: 5174
Transcript: NM_145892
Intron
Length: 32217
Transcript: NM_145892
Length: 32217
Transcript: NM_145892
Intron
Length: 1569
Transcript: NM_145892
Length: 1569
Transcript: NM_145892
Reaction
Expected peak: 112
1.8M
refseq_A2BP1.F3
refseq_A2BP1.R3
Expected peak: 112
1.8M
refseq_A2BP1.F3
refseq_A2BP1.R3
Exon
Length: 339
Transcript: NM_145893
Length: 339
Transcript: NM_145893
Exon
Length: 243
Transcript: NM_145893
Length: 243
Transcript: NM_145893
Exon
Length: 144
Transcript: NM_145893
Length: 144
Transcript: NM_145893
Exon
Length: 54
Transcript: NM_145893
Length: 54
Transcript: NM_145893
Exon
Length: 93
Transcript: NM_145893
Length: 93
Transcript: NM_145893
Exon
Length: 61
Transcript: NM_145893
Length: 61
Transcript: NM_145893
Exon
Length: 54
Transcript: NM_145893
Length: 54
Transcript: NM_145893
Exon
Length: 81
Transcript: NM_145893
Length: 81
Transcript: NM_145893
Exon
Length: 133
Transcript: NM_145893
Length: 133
Transcript: NM_145893
Exon
Length: 43
Transcript: NM_145893
Length: 43
Transcript: NM_145893
Exon
Length: 65
Transcript: NM_145893
Length: 65
Transcript: NM_145893
Exon
Length: 53
Transcript: NM_145893
Length: 53
Transcript: NM_145893
Exon
Length: 76
Transcript: NM_145893
Length: 76
Transcript: NM_145893
Exon
Length: 1875
Transcript: NM_145893
Length: 1875
Transcript: NM_145893
Intron
Length: 185059
Transcript: NM_145893
Length: 185059
Transcript: NM_145893
Intron
Length: 61387
Transcript: NM_145893
Length: 61387
Transcript: NM_145893
Intron
Length: 7326
Transcript: NM_145893
Length: 7326
Transcript: NM_145893
Intron
Length: 8248
Transcript: NM_145893
Length: 8248
Transcript: NM_145893
Intron
Length: 1729
Transcript: NM_145893
Length: 1729
Transcript: NM_145893
Intron
Length: 9853
Transcript: NM_145893
Length: 9853
Transcript: NM_145893
Intron
Length: 23264
Transcript: NM_145893
Length: 23264
Transcript: NM_145893
Intron
Length: 23131
Transcript: NM_145893
Length: 23131
Transcript: NM_145893
Intron
Length: 17609
Transcript: NM_145893
Length: 17609
Transcript: NM_145893
Intron
Length: 5174
Transcript: NM_145893
Length: 5174
Transcript: NM_145893
Intron
Length: 16476
Transcript: NM_145893
Length: 16476
Transcript: NM_145893
Intron
Length: 15688
Transcript: NM_145893
Length: 15688
Transcript: NM_145893
Intron
Length: 1491
Transcript: NM_145893
Length: 1491
Transcript: NM_145893
Reaction
Expected peak: 165
0M
refseq_A2BP1.F3
refseq_A2BP1.R3
Expected peak: 165
0M
refseq_A2BP1.F3
refseq_A2BP1.R3
refseq_A2BP1.R3
GAGCAAGTGCGTGGTGGTAG
GAGCAAGTGCGTGGTGGTAG
refseq_A2BP1.F3
GGTGGTTATGCTGCATACCG
GGTGGTTATGCTGCATACCG