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Supplementary data
RBFOX2 enforces the mesenchymal splicing signature in normal and cancer tissues
1. Initial RefSeq screen / epithelium and mesenchyme (fetal colon)
Transcript map
: AGTRAP epithelium
Exon
Length: 151
Transcript: NM_001040194
Length: 151
Transcript: NM_001040194
Exon
Length: 35
Transcript: NM_001040194
Length: 35
Transcript: NM_001040194
Exon
Length: 106
Transcript: NM_001040194
Length: 106
Transcript: NM_001040194
Exon
Length: 175
Transcript: NM_001040194
Length: 175
Transcript: NM_001040194
Exon
Length: 695
Transcript: NM_001040194
Length: 695
Transcript: NM_001040194
Intron
Length: 9567
Transcript: NM_001040194
Length: 9567
Transcript: NM_001040194
Intron
Length: 1602
Transcript: NM_001040194
Length: 1602
Transcript: NM_001040194
Intron
Length: 869
Transcript: NM_001040194
Length: 869
Transcript: NM_001040194
Intron
Length: 1487
Transcript: NM_001040194
Length: 1487
Transcript: NM_001040194
Reaction
Expected peak: 115
4.6M
refseq_AGTRAP.F1
refseq_AGTRAP.R1
Expected peak: 115
4.6M
refseq_AGTRAP.F1
refseq_AGTRAP.R1
Exon
Length: 151
Transcript: NM_001040195
Length: 151
Transcript: NM_001040195
Exon
Length: 106
Transcript: NM_001040195
Length: 106
Transcript: NM_001040195
Exon
Length: 175
Transcript: NM_001040195
Length: 175
Transcript: NM_001040195
Exon
Length: 695
Transcript: NM_001040195
Length: 695
Transcript: NM_001040195
Intron
Length: 11204
Transcript: NM_001040195
Length: 11204
Transcript: NM_001040195
Intron
Length: 869
Transcript: NM_001040195
Length: 869
Transcript: NM_001040195
Intron
Length: 1487
Transcript: NM_001040195
Length: 1487
Transcript: NM_001040195
Reaction
Expected peak: 115
4.6M
refseq_AGTRAP.F1
refseq_AGTRAP.R1
Expected peak: 115
4.6M
refseq_AGTRAP.F1
refseq_AGTRAP.R1
Exon
Length: 151
Transcript: NM_001040196
Length: 151
Transcript: NM_001040196
Exon
Length: 35
Transcript: NM_001040196
Length: 35
Transcript: NM_001040196
Exon
Length: 97
Transcript: NM_001040196
Length: 97
Transcript: NM_001040196
Exon
Length: 106
Transcript: NM_001040196
Length: 106
Transcript: NM_001040196
Exon
Length: 175
Transcript: NM_001040196
Length: 175
Transcript: NM_001040196
Exon
Length: 695
Transcript: NM_001040196
Length: 695
Transcript: NM_001040196
Intron
Length: 9567
Transcript: NM_001040196
Length: 9567
Transcript: NM_001040196
Intron
Length: 289
Transcript: NM_001040196
Length: 289
Transcript: NM_001040196
Intron
Length: 1216
Transcript: NM_001040196
Length: 1216
Transcript: NM_001040196
Intron
Length: 869
Transcript: NM_001040196
Length: 869
Transcript: NM_001040196
Intron
Length: 1487
Transcript: NM_001040196
Length: 1487
Transcript: NM_001040196
Reaction
Expected peak: 115
4.6M
refseq_AGTRAP.F1
refseq_AGTRAP.R1
Expected peak: 115
4.6M
refseq_AGTRAP.F1
refseq_AGTRAP.R1
Exon
Length: 151
Transcript: NM_001040197
Length: 151
Transcript: NM_001040197
Exon
Length: 35
Transcript: NM_001040197
Length: 35
Transcript: NM_001040197
Exon
Length: 97
Transcript: NM_001040197
Length: 97
Transcript: NM_001040197
Exon
Length: 106
Transcript: NM_001040197
Length: 106
Transcript: NM_001040197
Exon
Length: 196
Transcript: NM_001040197
Length: 196
Transcript: NM_001040197
Exon
Length: 695
Transcript: NM_001040197
Length: 695
Transcript: NM_001040197
Intron
Length: 9567
Transcript: NM_001040197
Length: 9567
Transcript: NM_001040197
Intron
Length: 289
Transcript: NM_001040197
Length: 289
Transcript: NM_001040197
Intron
Length: 1216
Transcript: NM_001040197
Length: 1216
Transcript: NM_001040197
Intron
Length: 869
Transcript: NM_001040197
Length: 869
Transcript: NM_001040197
Intron
Length: 1466
Transcript: NM_001040197
Length: 1466
Transcript: NM_001040197
Reaction
Expected peak: 136
43M
refseq_AGTRAP.F1
refseq_AGTRAP.R1
Expected peak: 136
43M
refseq_AGTRAP.F1
refseq_AGTRAP.R1
Exon
Length: 151
Transcript: NM_020350
Length: 151
Transcript: NM_020350
Exon
Length: 35
Transcript: NM_020350
Length: 35
Transcript: NM_020350
Exon
Length: 106
Transcript: NM_020350
Length: 106
Transcript: NM_020350
Exon
Length: 196
Transcript: NM_020350
Length: 196
Transcript: NM_020350
Exon
Length: 695
Transcript: NM_020350
Length: 695
Transcript: NM_020350
Intron
Length: 9567
Transcript: NM_020350
Length: 9567
Transcript: NM_020350
Intron
Length: 1602
Transcript: NM_020350
Length: 1602
Transcript: NM_020350
Intron
Length: 869
Transcript: NM_020350
Length: 869
Transcript: NM_020350
Intron
Length: 1466
Transcript: NM_020350
Length: 1466
Transcript: NM_020350
Reaction
Expected peak: 136
43M
refseq_AGTRAP.F1
refseq_AGTRAP.R1
Expected peak: 136
43M
refseq_AGTRAP.F1
refseq_AGTRAP.R1
refseq_AGTRAP.R1
GGACTGCAAAGGGATCTGC
GGACTGCAAAGGGATCTGC
refseq_AGTRAP.F1
TGCTTCGTCTACCACATGTACC
TGCTTCGTCTACCACATGTACC