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Supplementary data
RBFOX2 enforces the mesenchymal splicing signature in normal and cancer tissues
1. Initial RefSeq screen / epithelium and mesenchyme (fetal colon)
Transcript map
: AFG3L1 epithelium
Exon
Length: 149
Transcript: NM_001031805
Length: 149
Transcript: NM_001031805
Exon
Length: 198
Transcript: NM_001031805
Length: 198
Transcript: NM_001031805
Exon
Length: 69
Transcript: NM_001031805
Length: 69
Transcript: NM_001031805
Exon
Length: 95
Transcript: NM_001031805
Length: 95
Transcript: NM_001031805
Exon
Length: 151
Transcript: NM_001031805
Length: 151
Transcript: NM_001031805
Exon
Length: 69
Transcript: NM_001031805
Length: 69
Transcript: NM_001031805
Exon
Length: 100
Transcript: NM_001031805
Length: 100
Transcript: NM_001031805
Exon
Length: 138
Transcript: NM_001031805
Length: 138
Transcript: NM_001031805
Exon
Length: 108
Transcript: NM_001031805
Length: 108
Transcript: NM_001031805
Exon
Length: 126
Transcript: NM_001031805
Length: 126
Transcript: NM_001031805
Exon
Length: 1924
Transcript: NM_001031805
Length: 1924
Transcript: NM_001031805
Intron
Length: 4839
Transcript: NM_001031805
Length: 4839
Transcript: NM_001031805
Intron
Length: 1007
Transcript: NM_001031805
Length: 1007
Transcript: NM_001031805
Intron
Length: 1363
Transcript: NM_001031805
Length: 1363
Transcript: NM_001031805
Intron
Length: 1436
Transcript: NM_001031805
Length: 1436
Transcript: NM_001031805
Intron
Length: 2607
Transcript: NM_001031805
Length: 2607
Transcript: NM_001031805
Intron
Length: 4252
Transcript: NM_001031805
Length: 4252
Transcript: NM_001031805
Intron
Length: 1914
Transcript: NM_001031805
Length: 1914
Transcript: NM_001031805
Intron
Length: 1717
Transcript: NM_001031805
Length: 1717
Transcript: NM_001031805
Intron
Length: 939
Transcript: NM_001031805
Length: 939
Transcript: NM_001031805
Intron
Length: 799
Transcript: NM_001031805
Length: 799
Transcript: NM_001031805
Reaction
Expected peak: 212
59.6M
refseq_AFG3L1.F3
refseq_AFG3L1.R3
Expected peak: 212
59.6M
refseq_AFG3L1.F3
refseq_AFG3L1.R3
Exon
Length: 173
Transcript: NM_001132
Length: 173
Transcript: NM_001132
Exon
Length: 125
Transcript: NM_001132
Length: 125
Transcript: NM_001132
Exon
Length: 69
Transcript: NM_001132
Length: 69
Transcript: NM_001132
Exon
Length: 95
Transcript: NM_001132
Length: 95
Transcript: NM_001132
Exon
Length: 151
Transcript: NM_001132
Length: 151
Transcript: NM_001132
Exon
Length: 69
Transcript: NM_001132
Length: 69
Transcript: NM_001132
Exon
Length: 138
Transcript: NM_001132
Length: 138
Transcript: NM_001132
Exon
Length: 108
Transcript: NM_001132
Length: 108
Transcript: NM_001132
Exon
Length: 126
Transcript: NM_001132
Length: 126
Transcript: NM_001132
Exon
Length: 1868
Transcript: NM_001132
Length: 1868
Transcript: NM_001132
Intron
Length: 4912
Transcript: NM_001132
Length: 4912
Transcript: NM_001132
Intron
Length: 1007
Transcript: NM_001132
Length: 1007
Transcript: NM_001132
Intron
Length: 1363
Transcript: NM_001132
Length: 1363
Transcript: NM_001132
Intron
Length: 1436
Transcript: NM_001132
Length: 1436
Transcript: NM_001132
Intron
Length: 2607
Transcript: NM_001132
Length: 2607
Transcript: NM_001132
Intron
Length: 6266
Transcript: NM_001132
Length: 6266
Transcript: NM_001132
Intron
Length: 1717
Transcript: NM_001132
Length: 1717
Transcript: NM_001132
Intron
Length: 939
Transcript: NM_001132
Length: 939
Transcript: NM_001132
Intron
Length: 865
Transcript: NM_001132
Length: 865
Transcript: NM_001132
Reaction
Expected peak: 112
22.8M
refseq_AFG3L1.F3
refseq_AFG3L1.R3
Expected peak: 112
22.8M
refseq_AFG3L1.F3
refseq_AFG3L1.R3
refseq_AFG3L1.F3
GTCGTGAACAAACAATCTGTGC
GTCGTGAACAAACAATCTGTGC
refseq_AFG3L1.R3
CAGTTGCTTTGGCAAGAAGG
CAGTTGCTTTGGCAAGAAGG