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Supplementary data
RBFOX2 enforces the mesenchymal splicing signature in normal and cancer tissues
1. Initial RefSeq screen / epithelium and mesenchyme (fetal colon)
Transcript map
: AFTPH epithelium
Exon
Length: 282
Transcript: NM_001002243
Length: 282
Transcript: NM_001002243
Exon
Length: 1967
Transcript: NM_001002243
Length: 1967
Transcript: NM_001002243
Exon
Length: 152
Transcript: NM_001002243
Length: 152
Transcript: NM_001002243
Exon
Length: 127
Transcript: NM_001002243
Length: 127
Transcript: NM_001002243
Exon
Length: 57
Transcript: NM_001002243
Length: 57
Transcript: NM_001002243
Exon
Length: 123
Transcript: NM_001002243
Length: 123
Transcript: NM_001002243
Exon
Length: 61
Transcript: NM_001002243
Length: 61
Transcript: NM_001002243
Exon
Length: 124
Transcript: NM_001002243
Length: 124
Transcript: NM_001002243
Exon
Length: 1118
Transcript: NM_001002243
Length: 1118
Transcript: NM_001002243
Intron
Length: 26830
Transcript: NM_001002243
Length: 26830
Transcript: NM_001002243
Intron
Length: 14152
Transcript: NM_001002243
Length: 14152
Transcript: NM_001002243
Intron
Length: 1378
Transcript: NM_001002243
Length: 1378
Transcript: NM_001002243
Intron
Length: 404
Transcript: NM_001002243
Length: 404
Transcript: NM_001002243
Intron
Length: 3266
Transcript: NM_001002243
Length: 3266
Transcript: NM_001002243
Intron
Length: 6417
Transcript: NM_001002243
Length: 6417
Transcript: NM_001002243
Intron
Length: 5875
Transcript: NM_001002243
Length: 5875
Transcript: NM_001002243
Intron
Length: 6342
Transcript: NM_001002243
Length: 6342
Transcript: NM_001002243
Reaction
Expected peak: 147
60.3M
refseq_AFTPH.F1
refseq_AFTPH.R1
Expected peak: 147
60.3M
refseq_AFTPH.F1
refseq_AFTPH.R1
Exon
Length: 282
Transcript: NM_017657
Length: 282
Transcript: NM_017657
Exon
Length: 1967
Transcript: NM_017657
Length: 1967
Transcript: NM_017657
Exon
Length: 152
Transcript: NM_017657
Length: 152
Transcript: NM_017657
Exon
Length: 127
Transcript: NM_017657
Length: 127
Transcript: NM_017657
Exon
Length: 57
Transcript: NM_017657
Length: 57
Transcript: NM_017657
Exon
Length: 123
Transcript: NM_017657
Length: 123
Transcript: NM_017657
Exon
Length: 61
Transcript: NM_017657
Length: 61
Transcript: NM_017657
Exon
Length: 124
Transcript: NM_017657
Length: 124
Transcript: NM_017657
Exon
Length: 1121
Transcript: NM_017657
Length: 1121
Transcript: NM_017657
Intron
Length: 26830
Transcript: NM_017657
Length: 26830
Transcript: NM_017657
Intron
Length: 14152
Transcript: NM_017657
Length: 14152
Transcript: NM_017657
Intron
Length: 1378
Transcript: NM_017657
Length: 1378
Transcript: NM_017657
Intron
Length: 404
Transcript: NM_017657
Length: 404
Transcript: NM_017657
Intron
Length: 3266
Transcript: NM_017657
Length: 3266
Transcript: NM_017657
Intron
Length: 6417
Transcript: NM_017657
Length: 6417
Transcript: NM_017657
Intron
Length: 5875
Transcript: NM_017657
Length: 5875
Transcript: NM_017657
Intron
Length: 6339
Transcript: NM_017657
Length: 6339
Transcript: NM_017657
Reaction
Expected peak: 147
60.3M
refseq_AFTPH.F1
refseq_AFTPH.R1
Expected peak: 147
60.3M
refseq_AFTPH.F1
refseq_AFTPH.R1
Exon
Length: 282
Transcript: NM_203437
Length: 282
Transcript: NM_203437
Exon
Length: 1967
Transcript: NM_203437
Length: 1967
Transcript: NM_203437
Exon
Length: 152
Transcript: NM_203437
Length: 152
Transcript: NM_203437
Exon
Length: 127
Transcript: NM_203437
Length: 127
Transcript: NM_203437
Exon
Length: 57
Transcript: NM_203437
Length: 57
Transcript: NM_203437
Exon
Length: 123
Transcript: NM_203437
Length: 123
Transcript: NM_203437
Exon
Length: 61
Transcript: NM_203437
Length: 61
Transcript: NM_203437
Exon
Length: 84
Transcript: NM_203437
Length: 84
Transcript: NM_203437
Exon
Length: 124
Transcript: NM_203437
Length: 124
Transcript: NM_203437
Exon
Length: 1118
Transcript: NM_203437
Length: 1118
Transcript: NM_203437
Intron
Length: 26830
Transcript: NM_203437
Length: 26830
Transcript: NM_203437
Intron
Length: 14152
Transcript: NM_203437
Length: 14152
Transcript: NM_203437
Intron
Length: 1378
Transcript: NM_203437
Length: 1378
Transcript: NM_203437
Intron
Length: 404
Transcript: NM_203437
Length: 404
Transcript: NM_203437
Intron
Length: 3266
Transcript: NM_203437
Length: 3266
Transcript: NM_203437
Intron
Length: 6417
Transcript: NM_203437
Length: 6417
Transcript: NM_203437
Intron
Length: 1643
Transcript: NM_203437
Length: 1643
Transcript: NM_203437
Intron
Length: 4148
Transcript: NM_203437
Length: 4148
Transcript: NM_203437
Intron
Length: 6342
Transcript: NM_203437
Length: 6342
Transcript: NM_203437
Reaction
Expected peak: 231
5.8M
refseq_AFTPH.F1
refseq_AFTPH.R1
Expected peak: 231
5.8M
refseq_AFTPH.F1
refseq_AFTPH.R1
refseq_AFTPH.F1
TCTCTACCACCCGTCCAGTTT
TCTCTACCACCCGTCCAGTTT
refseq_AFTPH.R1
GAGTCTTGCAAATGCATCAGTC
GAGTCTTGCAAATGCATCAGTC