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Supplementary data
RBFOX2 enforces the mesenchymal splicing signature in normal and cancer tissues
1. Initial RefSeq screen / epithelium and mesenchyme (fetal colon)
Transcript map
: ADARB1 epithelium
- refseq_ADARB1.F2 / refseq_ADARB1.R2 (CM019542 F19) : Curve | Curve set
- refseq_ADARB1.F4 / refseq_ADARB1.R4 (CM019542 F17) : Curve | Curve set
Exon
Length: 194
Transcript: NM_001033049
Length: 194
Transcript: NM_001033049
Exon
Length: 172
Transcript: NM_001033049
Length: 172
Transcript: NM_001033049
Exon
Length: 118
Transcript: NM_001033049
Length: 118
Transcript: NM_001033049
Exon
Length: 75
Transcript: NM_001033049
Length: 75
Transcript: NM_001033049
Exon
Length: 935
Transcript: NM_001033049
Length: 935
Transcript: NM_001033049
Exon
Length: 115
Transcript: NM_001033049
Length: 115
Transcript: NM_001033049
Exon
Length: 169
Transcript: NM_001033049
Length: 169
Transcript: NM_001033049
Exon
Length: 149
Transcript: NM_001033049
Length: 149
Transcript: NM_001033049
Exon
Length: 169
Transcript: NM_001033049
Length: 169
Transcript: NM_001033049
Exon
Length: 182
Transcript: NM_001033049
Length: 182
Transcript: NM_001033049
Exon
Length: 179
Transcript: NM_001033049
Length: 179
Transcript: NM_001033049
Exon
Length: 1560
Transcript: NM_001033049
Length: 1560
Transcript: NM_001033049
Exon
Length: 1013
Transcript: NM_001033049
Length: 1013
Transcript: NM_001033049
Intron
Length: 53608
Transcript: NM_001033049
Length: 53608
Transcript: NM_001033049
Intron
Length: 6141
Transcript: NM_001033049
Length: 6141
Transcript: NM_001033049
Intron
Length: 36777
Transcript: NM_001033049
Length: 36777
Transcript: NM_001033049
Intron
Length: 4045
Transcript: NM_001033049
Length: 4045
Transcript: NM_001033049
Intron
Length: 3665
Transcript: NM_001033049
Length: 3665
Transcript: NM_001033049
Intron
Length: 2140
Transcript: NM_001033049
Length: 2140
Transcript: NM_001033049
Intron
Length: 608
Transcript: NM_001033049
Length: 608
Transcript: NM_001033049
Intron
Length: 1412
Transcript: NM_001033049
Length: 1412
Transcript: NM_001033049
Intron
Length: 19463
Transcript: NM_001033049
Length: 19463
Transcript: NM_001033049
Intron
Length: 16099
Transcript: NM_001033049
Length: 16099
Transcript: NM_001033049
Intron
Length: 1003
Transcript: NM_001033049
Length: 1003
Transcript: NM_001033049
Intron
Length: 1969
Transcript: NM_001033049
Length: 1969
Transcript: NM_001033049
Reaction
Expected peak: 112
19.9M
refseq_ADARB1.F2
refseq_ADARB1.R2
Expected peak: 112
19.9M
refseq_ADARB1.F2
refseq_ADARB1.R2
Reaction
Expected peak: 298
4.4M
refseq_ADARB1.F4
refseq_ADARB1.R4
Expected peak: 298
4.4M
refseq_ADARB1.F4
refseq_ADARB1.R4
Exon
Length: 194
Transcript: NM_001112
Length: 194
Transcript: NM_001112
Exon
Length: 172
Transcript: NM_001112
Length: 172
Transcript: NM_001112
Exon
Length: 75
Transcript: NM_001112
Length: 75
Transcript: NM_001112
Exon
Length: 935
Transcript: NM_001112
Length: 935
Transcript: NM_001112
Exon
Length: 115
Transcript: NM_001112
Length: 115
Transcript: NM_001112
Exon
Length: 169
Transcript: NM_001112
Length: 169
Transcript: NM_001112
Exon
Length: 149
Transcript: NM_001112
Length: 149
Transcript: NM_001112
Exon
Length: 169
Transcript: NM_001112
Length: 169
Transcript: NM_001112
Exon
Length: 182
Transcript: NM_001112
Length: 182
Transcript: NM_001112
Exon
Length: 179
Transcript: NM_001112
Length: 179
Transcript: NM_001112
Exon
Length: 4542
Transcript: NM_001112
Length: 4542
Transcript: NM_001112
Intron
Length: 53608
Transcript: NM_001112
Length: 53608
Transcript: NM_001112
Intron
Length: 43036
Transcript: NM_001112
Length: 43036
Transcript: NM_001112
Intron
Length: 4045
Transcript: NM_001112
Length: 4045
Transcript: NM_001112
Intron
Length: 3665
Transcript: NM_001112
Length: 3665
Transcript: NM_001112
Intron
Length: 2140
Transcript: NM_001112
Length: 2140
Transcript: NM_001112
Intron
Length: 608
Transcript: NM_001112
Length: 608
Transcript: NM_001112
Intron
Length: 1412
Transcript: NM_001112
Length: 1412
Transcript: NM_001112
Intron
Length: 19463
Transcript: NM_001112
Length: 19463
Transcript: NM_001112
Intron
Length: 16099
Transcript: NM_001112
Length: 16099
Transcript: NM_001112
Intron
Length: 1003
Transcript: NM_001112
Length: 1003
Transcript: NM_001112
Reaction
Expected peak: 112
19.9M
refseq_ADARB1.F2
refseq_ADARB1.R2
Expected peak: 112
19.9M
refseq_ADARB1.F2
refseq_ADARB1.R2
Reaction
Expected peak: 180
22.8M
refseq_ADARB1.F4
refseq_ADARB1.R4
Expected peak: 180
22.8M
refseq_ADARB1.F4
refseq_ADARB1.R4
Exon
Length: 194
Transcript: NM_015833
Length: 194
Transcript: NM_015833
Exon
Length: 172
Transcript: NM_015833
Length: 172
Transcript: NM_015833
Exon
Length: 75
Transcript: NM_015833
Length: 75
Transcript: NM_015833
Exon
Length: 935
Transcript: NM_015833
Length: 935
Transcript: NM_015833
Exon
Length: 115
Transcript: NM_015833
Length: 115
Transcript: NM_015833
Exon
Length: 169
Transcript: NM_015833
Length: 169
Transcript: NM_015833
Exon
Length: 149
Transcript: NM_015833
Length: 149
Transcript: NM_015833
Exon
Length: 120
Transcript: NM_015833
Length: 120
Transcript: NM_015833
Exon
Length: 169
Transcript: NM_015833
Length: 169
Transcript: NM_015833
Exon
Length: 182
Transcript: NM_015833
Length: 182
Transcript: NM_015833
Exon
Length: 179
Transcript: NM_015833
Length: 179
Transcript: NM_015833
Exon
Length: 1560
Transcript: NM_015833
Length: 1560
Transcript: NM_015833
Exon
Length: 1013
Transcript: NM_015833
Length: 1013
Transcript: NM_015833
Intron
Length: 53608
Transcript: NM_015833
Length: 53608
Transcript: NM_015833
Intron
Length: 43036
Transcript: NM_015833
Length: 43036
Transcript: NM_015833
Intron
Length: 4045
Transcript: NM_015833
Length: 4045
Transcript: NM_015833
Intron
Length: 3665
Transcript: NM_015833
Length: 3665
Transcript: NM_015833
Intron
Length: 2140
Transcript: NM_015833
Length: 2140
Transcript: NM_015833
Intron
Length: 608
Transcript: NM_015833
Length: 608
Transcript: NM_015833
Intron
Length: 963
Transcript: NM_015833
Length: 963
Transcript: NM_015833
Intron
Length: 329
Transcript: NM_015833
Length: 329
Transcript: NM_015833
Intron
Length: 19463
Transcript: NM_015833
Length: 19463
Transcript: NM_015833
Intron
Length: 16099
Transcript: NM_015833
Length: 16099
Transcript: NM_015833
Intron
Length: 1003
Transcript: NM_015833
Length: 1003
Transcript: NM_015833
Intron
Length: 1969
Transcript: NM_015833
Length: 1969
Transcript: NM_015833
Reaction
Expected peak: 232
10.5M
refseq_ADARB1.F2
refseq_ADARB1.R2
Expected peak: 232
10.5M
refseq_ADARB1.F2
refseq_ADARB1.R2
Reaction
Expected peak: 180
22.8M
refseq_ADARB1.F4
refseq_ADARB1.R4
Expected peak: 180
22.8M
refseq_ADARB1.F4
refseq_ADARB1.R4
Exon
Length: 194
Transcript: NM_015834
Length: 194
Transcript: NM_015834
Exon
Length: 172
Transcript: NM_015834
Length: 172
Transcript: NM_015834
Exon
Length: 75
Transcript: NM_015834
Length: 75
Transcript: NM_015834
Exon
Length: 935
Transcript: NM_015834
Length: 935
Transcript: NM_015834
Exon
Length: 115
Transcript: NM_015834
Length: 115
Transcript: NM_015834
Exon
Length: 169
Transcript: NM_015834
Length: 169
Transcript: NM_015834
Exon
Length: 149
Transcript: NM_015834
Length: 149
Transcript: NM_015834
Exon
Length: 120
Transcript: NM_015834
Length: 120
Transcript: NM_015834
Exon
Length: 169
Transcript: NM_015834
Length: 169
Transcript: NM_015834
Exon
Length: 182
Transcript: NM_015834
Length: 182
Transcript: NM_015834
Exon
Length: 179
Transcript: NM_015834
Length: 179
Transcript: NM_015834
Exon
Length: 90
Transcript: NM_015834
Length: 90
Transcript: NM_015834
Exon
Length: 1013
Transcript: NM_015834
Length: 1013
Transcript: NM_015834
Intron
Length: 53608
Transcript: NM_015834
Length: 53608
Transcript: NM_015834
Intron
Length: 43036
Transcript: NM_015834
Length: 43036
Transcript: NM_015834
Intron
Length: 4045
Transcript: NM_015834
Length: 4045
Transcript: NM_015834
Intron
Length: 3665
Transcript: NM_015834
Length: 3665
Transcript: NM_015834
Intron
Length: 2140
Transcript: NM_015834
Length: 2140
Transcript: NM_015834
Intron
Length: 608
Transcript: NM_015834
Length: 608
Transcript: NM_015834
Intron
Length: 963
Transcript: NM_015834
Length: 963
Transcript: NM_015834
Intron
Length: 329
Transcript: NM_015834
Length: 329
Transcript: NM_015834
Intron
Length: 19463
Transcript: NM_015834
Length: 19463
Transcript: NM_015834
Intron
Length: 16099
Transcript: NM_015834
Length: 16099
Transcript: NM_015834
Intron
Length: 1003
Transcript: NM_015834
Length: 1003
Transcript: NM_015834
Intron
Length: 3439
Transcript: NM_015834
Length: 3439
Transcript: NM_015834
Reaction
Expected peak: 232
10.5M
refseq_ADARB1.F2
refseq_ADARB1.R2
Expected peak: 232
10.5M
refseq_ADARB1.F2
refseq_ADARB1.R2
Reaction
Expected peak: 180
22.8M
refseq_ADARB1.F4
refseq_ADARB1.R4
Expected peak: 180
22.8M
refseq_ADARB1.F4
refseq_ADARB1.R4
refseq_ADARB1.F2
ACATGAGCCAATCCTGGAAG
ACATGAGCCAATCCTGGAAG
refseq_ADARB1.R2
ATTGGAGCGCACTGGAATC
ATTGGAGCGCACTGGAATC
refseq_ADARB1.F4
CTGGCATGGAGAGCTTAAGG
CTGGCATGGAGAGCTTAAGG
refseq_ADARB1.R4
TTGACTGGCGGAGACTGTTT
TTGACTGGCGGAGACTGTTT