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LGFUS Public Data
Identification of alternative splicing markers for breast cancer
1. Breast Discovery Screen
Transcript map
: ABCB1
Exon
Length: 251
Transcript: ABCB1.aAug05
Length: 251
Transcript: ABCB1.aAug05
Exon
Length: 324
Transcript: ABCB1.aAug05
Length: 324
Transcript: ABCB1.aAug05
Exon
Length: 74
Transcript: ABCB1.aAug05
Length: 74
Transcript: ABCB1.aAug05
Exon
Length: 49
Transcript: ABCB1.aAug05
Length: 49
Transcript: ABCB1.aAug05
Exon
Length: 169
Transcript: ABCB1.aAug05
Length: 169
Transcript: ABCB1.aAug05
Exon
Length: 52
Transcript: ABCB1.aAug05
Length: 52
Transcript: ABCB1.aAug05
Exon
Length: 192
Transcript: ABCB1.aAug05
Length: 192
Transcript: ABCB1.aAug05
Exon
Length: 172
Transcript: ABCB1.aAug05
Length: 172
Transcript: ABCB1.aAug05
Exon
Length: 125
Transcript: ABCB1.aAug05
Length: 125
Transcript: ABCB1.aAug05
Exon
Length: 172
Transcript: ABCB1.aAug05
Length: 172
Transcript: ABCB1.aAug05
Exon
Length: 114
Transcript: ABCB1.aAug05
Length: 114
Transcript: ABCB1.aAug05
Exon
Length: 111
Transcript: ABCB1.aAug05
Length: 111
Transcript: ABCB1.aAug05
Exon
Length: 126
Transcript: ABCB1.aAug05
Length: 126
Transcript: ABCB1.aAug05
Exon
Length: 204
Transcript: ABCB1.aAug05
Length: 204
Transcript: ABCB1.aAug05
Exon
Length: 171
Transcript: ABCB1.aAug05
Length: 171
Transcript: ABCB1.aAug05
Exon
Length: 162
Transcript: ABCB1.aAug05
Length: 162
Transcript: ABCB1.aAug05
Exon
Length: 177
Transcript: ABCB1.aAug05
Length: 177
Transcript: ABCB1.aAug05
Exon
Length: 147
Transcript: ABCB1.aAug05
Length: 147
Transcript: ABCB1.aAug05
Exon
Length: 108
Transcript: ABCB1.aAug05
Length: 108
Transcript: ABCB1.aAug05
Exon
Length: 78
Transcript: ABCB1.aAug05
Length: 78
Transcript: ABCB1.aAug05
Exon
Length: 84
Transcript: ABCB1.aAug05
Length: 84
Transcript: ABCB1.aAug05
Exon
Length: 204
Transcript: ABCB1.aAug05
Length: 204
Transcript: ABCB1.aAug05
Exon
Length: 101
Transcript: ABCB1.aAug05
Length: 101
Transcript: ABCB1.aAug05
Exon
Length: 141
Transcript: ABCB1.aAug05
Length: 141
Transcript: ABCB1.aAug05
Exon
Length: 157
Transcript: ABCB1.aAug05
Length: 157
Transcript: ABCB1.aAug05
Exon
Length: 198
Transcript: ABCB1.aAug05
Length: 198
Transcript: ABCB1.aAug05
Exon
Length: 207
Transcript: ABCB1.aAug05
Length: 207
Transcript: ABCB1.aAug05
Exon
Length: 147
Transcript: ABCB1.aAug05
Length: 147
Transcript: ABCB1.aAug05
Exon
Length: 1426
Transcript: ABCB1.aAug05
Length: 1426
Transcript: ABCB1.aAug05
Intron
Length: 112082
Transcript: ABCB1.aAug05
Length: 112082
Transcript: ABCB1.aAug05
Intron
Length: 564
Transcript: ABCB1.aAug05
Length: 564
Transcript: ABCB1.aAug05
Intron
Length: 4302
Transcript: ABCB1.aAug05
Length: 4302
Transcript: ABCB1.aAug05
Intron
Length: 10085
Transcript: ABCB1.aAug05
Length: 10085
Transcript: ABCB1.aAug05
Intron
Length: 15288
Transcript: ABCB1.aAug05
Length: 15288
Transcript: ABCB1.aAug05
Intron
Length: 3195
Transcript: ABCB1.aAug05
Length: 3195
Transcript: ABCB1.aAug05
Intron
Length: 543
Transcript: ABCB1.aAug05
Length: 543
Transcript: ABCB1.aAug05
Intron
Length: 4682
Transcript: ABCB1.aAug05
Length: 4682
Transcript: ABCB1.aAug05
Intron
Length: 7330
Transcript: ABCB1.aAug05
Length: 7330
Transcript: ABCB1.aAug05
Intron
Length: 2922
Transcript: ABCB1.aAug05
Length: 2922
Transcript: ABCB1.aAug05
Intron
Length: 146
Transcript: ABCB1.aAug05
Length: 146
Transcript: ABCB1.aAug05
Intron
Length: 171
Transcript: ABCB1.aAug05
Length: 171
Transcript: ABCB1.aAug05
Intron
Length: 116
Transcript: ABCB1.aAug05
Length: 116
Transcript: ABCB1.aAug05
Intron
Length: 332
Transcript: ABCB1.aAug05
Length: 332
Transcript: ABCB1.aAug05
Intron
Length: 3323
Transcript: ABCB1.aAug05
Length: 3323
Transcript: ABCB1.aAug05
Intron
Length: 863
Transcript: ABCB1.aAug05
Length: 863
Transcript: ABCB1.aAug05
Intron
Length: 547
Transcript: ABCB1.aAug05
Length: 547
Transcript: ABCB1.aAug05
Intron
Length: 2664
Transcript: ABCB1.aAug05
Length: 2664
Transcript: ABCB1.aAug05
Intron
Length: 2011
Transcript: ABCB1.aAug05
Length: 2011
Transcript: ABCB1.aAug05
Intron
Length: 2726
Transcript: ABCB1.aAug05
Length: 2726
Transcript: ABCB1.aAug05
Intron
Length: 4960
Transcript: ABCB1.aAug05
Length: 4960
Transcript: ABCB1.aAug05
Intron
Length: 10417
Transcript: ABCB1.aAug05
Length: 10417
Transcript: ABCB1.aAug05
Intron
Length: 1309
Transcript: ABCB1.aAug05
Length: 1309
Transcript: ABCB1.aAug05
Intron
Length: 2660
Transcript: ABCB1.aAug05
Length: 2660
Transcript: ABCB1.aAug05
Intron
Length: 1080
Transcript: ABCB1.aAug05
Length: 1080
Transcript: ABCB1.aAug05
Intron
Length: 5749
Transcript: ABCB1.aAug05
Length: 5749
Transcript: ABCB1.aAug05
Intron
Length: 3231
Transcript: ABCB1.aAug05
Length: 3231
Transcript: ABCB1.aAug05
Intron
Length: 1447
Transcript: ABCB1.aAug05
Length: 1447
Transcript: ABCB1.aAug05
Reaction
Expected peak: 108
Associated peak: 115,116,118,119
Repeated 4 time
Molarity: 8.93M
Forward: ABCB1.F3
Reverse: ABCB1.R5
Expected peak: 108
Associated peak: 115,116,118,119
Repeated 4 time
Molarity: 8.93M
Forward: ABCB1.F3
Reverse: ABCB1.R5
Reaction
Expected peak: 231
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: ABCB1.F4
Reverse: ABCB1.R6
Expected peak: 231
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: ABCB1.F4
Reverse: ABCB1.R6
Reaction
Expected peak: 328
Associated peak: 322,323,327,329
Repeated 4 time
Molarity: 3.45M
Forward: ABCB1.F1
Reverse: ABCB1.R3
Expected peak: 328
Associated peak: 322,323,327,329
Repeated 4 time
Molarity: 3.45M
Forward: ABCB1.F1
Reverse: ABCB1.R3
Reaction
Expected peak: 336
Associated peak: 333,336,338
Repeated 4 time
Molarity: 4.85M
Forward: ABCB1.F2
Reverse: ABCB1.R4
Expected peak: 336
Associated peak: 333,336,338
Repeated 4 time
Molarity: 4.85M
Forward: ABCB1.F2
Reverse: ABCB1.R4
Exon
Length: 25
Transcript: ABCB1.bAug05
Length: 25
Transcript: ABCB1.bAug05
Exon
Length: 84
Transcript: ABCB1.bAug05
Length: 84
Transcript: ABCB1.bAug05
Exon
Length: 204
Transcript: ABCB1.bAug05
Length: 204
Transcript: ABCB1.bAug05
Exon
Length: 101
Transcript: ABCB1.bAug05
Length: 101
Transcript: ABCB1.bAug05
Exon
Length: 141
Transcript: ABCB1.bAug05
Length: 141
Transcript: ABCB1.bAug05
Exon
Length: 157
Transcript: ABCB1.bAug05
Length: 157
Transcript: ABCB1.bAug05
Exon
Length: 198
Transcript: ABCB1.bAug05
Length: 198
Transcript: ABCB1.bAug05
Intron
Length: 496
Transcript: ABCB1.bAug05
Length: 496
Transcript: ABCB1.bAug05
Intron
Length: 4960
Transcript: ABCB1.bAug05
Length: 4960
Transcript: ABCB1.bAug05
Intron
Length: 10417
Transcript: ABCB1.bAug05
Length: 10417
Transcript: ABCB1.bAug05
Intron
Length: 1309
Transcript: ABCB1.bAug05
Length: 1309
Transcript: ABCB1.bAug05
Intron
Length: 2660
Transcript: ABCB1.bAug05
Length: 2660
Transcript: ABCB1.bAug05
Intron
Length: 1080
Transcript: ABCB1.bAug05
Length: 1080
Transcript: ABCB1.bAug05
Exon
Length: 83
Transcript: ABCB1.cAug05
Length: 83
Transcript: ABCB1.cAug05
Exon
Length: 157
Transcript: ABCB1.cAug05
Length: 157
Transcript: ABCB1.cAug05
Exon
Length: 198
Transcript: ABCB1.cAug05
Length: 198
Transcript: ABCB1.cAug05
Exon
Length: 207
Transcript: ABCB1.cAug05
Length: 207
Transcript: ABCB1.cAug05
Exon
Length: 142
Transcript: ABCB1.cAug05
Length: 142
Transcript: ABCB1.cAug05
Intron
Length: 2215
Transcript: ABCB1.cAug05
Length: 2215
Transcript: ABCB1.cAug05
Intron
Length: 1080
Transcript: ABCB1.cAug05
Length: 1080
Transcript: ABCB1.cAug05
Intron
Length: 5749
Transcript: ABCB1.cAug05
Length: 5749
Transcript: ABCB1.cAug05
Intron
Length: 3231
Transcript: ABCB1.cAug05
Length: 3231
Transcript: ABCB1.cAug05
Exon
Length: 344
Transcript: ABCB1.dAug05
Length: 344
Transcript: ABCB1.dAug05
Exon
Length: 141
Transcript: ABCB1.dAug05
Length: 141
Transcript: ABCB1.dAug05
Exon
Length: 157
Transcript: ABCB1.dAug05
Length: 157
Transcript: ABCB1.dAug05
Exon
Length: 107
Transcript: ABCB1.dAug05
Length: 107
Transcript: ABCB1.dAug05
Intron
Length: 1309
Transcript: ABCB1.dAug05
Length: 1309
Transcript: ABCB1.dAug05
Intron
Length: 2660
Transcript: ABCB1.dAug05
Length: 2660
Transcript: ABCB1.dAug05
Intron
Length: 1080
Transcript: ABCB1.dAug05
Length: 1080
Transcript: ABCB1.dAug05
Exon
Length: 87
Transcript: ABCB1.eAug05
Length: 87
Transcript: ABCB1.eAug05
Exon
Length: 106
Transcript: ABCB1.eAug05
Length: 106
Transcript: ABCB1.eAug05
Exon
Length: 71
Transcript: ABCB1.eAug05
Length: 71
Transcript: ABCB1.eAug05
Exon
Length: 74
Transcript: ABCB1.eAug05
Length: 74
Transcript: ABCB1.eAug05
Intron
Length: 112089
Transcript: ABCB1.eAug05
Length: 112089
Transcript: ABCB1.eAug05
Intron
Length: 147
Transcript: ABCB1.eAug05
Length: 147
Transcript: ABCB1.eAug05
Intron
Length: 564
Transcript: ABCB1.eAug05
Length: 564
Transcript: ABCB1.eAug05
Reaction
Expected peak: 101
Associated peak: 115,116,118,119
Repeated 4 time
Molarity: 8.93M
Forward: ABCB1.F3
Reverse: ABCB1.R5
Expected peak: 101
Associated peak: 115,116,118,119
Repeated 4 time
Molarity: 8.93M
Forward: ABCB1.F3
Reverse: ABCB1.R5
Reaction
Expected peak: 181
Associated peak: 189,191,192,193
Repeated 4 time
Molarity: 4.20M
Forward: ABCB1.F1
Reverse: ABCB1.R3
Expected peak: 181
Associated peak: 189,191,192,193
Repeated 4 time
Molarity: 4.20M
Forward: ABCB1.F1
Reverse: ABCB1.R3
Reaction
Expected peak: 189
Associated peak: 195,197,198
Repeated 4 time
Molarity: 4.33M
Forward: ABCB1.F2
Reverse: ABCB1.R4
Expected peak: 189
Associated peak: 195,197,198
Repeated 4 time
Molarity: 4.33M
Forward: ABCB1.F2
Reverse: ABCB1.R4
Reaction
Expected peak: 224
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: ABCB1.F4
Reverse: ABCB1.R6
Expected peak: 224
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: ABCB1.F4
Reverse: ABCB1.R6
Exon
Length: 87
Transcript: ABCB1.fAug05
Length: 87
Transcript: ABCB1.fAug05
Exon
Length: 106
Transcript: ABCB1.fAug05
Length: 106
Transcript: ABCB1.fAug05
Exon
Length: 74
Transcript: ABCB1.fAug05
Length: 74
Transcript: ABCB1.fAug05
Intron
Length: 112089
Transcript: ABCB1.fAug05
Length: 112089
Transcript: ABCB1.fAug05
Intron
Length: 782
Transcript: ABCB1.fAug05
Length: 782
Transcript: ABCB1.fAug05
Reaction
Expected peak: 101
Associated peak: 115,116,118,119
Repeated 4 time
Molarity: 8.93M
Forward: ABCB1.F3
Reverse: ABCB1.R5
Expected peak: 101
Associated peak: 115,116,118,119
Repeated 4 time
Molarity: 8.93M
Forward: ABCB1.F3
Reverse: ABCB1.R5
Reaction
Expected peak: 110
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: ABCB1.F1
Reverse: ABCB1.R3
Expected peak: 110
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: ABCB1.F1
Reverse: ABCB1.R3
Reaction
Expected peak: 118
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: ABCB1.F2
Reverse: ABCB1.R4
Expected peak: 118
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: ABCB1.F2
Reverse: ABCB1.R4
Reaction
Expected peak: 224
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: ABCB1.F4
Reverse: ABCB1.R6
Expected peak: 224
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: ABCB1.F4
Reverse: ABCB1.R6
Exon
Length: 409
Transcript: ABCB1.shed1.aAug05
Length: 409
Transcript: ABCB1.shed1.aAug05
ABCB1.F3
CTCACTTCAGGAAGCAACCAG
CTCACTTCAGGAAGCAACCAG
ABCB1.R4
CCTTCAAGATCCATTCCGAC
CCTTCAAGATCCATTCCGAC
ABCB1.R3
CTTCTTTGCTCCTCCATTGC
CTTCTTTGCTCCTCCATTGC
ABCB1.F1
ACCTGTTTCGCAGTTTCTCG
ACCTGTTTCGCAGTTTCTCG
ABCB1.F4
TGCCTGCCTTAGTTCATGTAGC
TGCCTGCCTTAGTTCATGTAGC
ABCB1.F2
AACGGAAGCCAGAACATTCC
AACGGAAGCCAGAACATTCC
ABCB1.R5
TGACTGAATGCTGATTCCTCG
TGACTGAATGCTGATTCCTCG
ABCB1.R6
AATGTTCTGGCTTCCGTTGC
AATGTTCTGGCTTCCGTTGC