Sequences - Rnomics 📊 Palace

        ☰
    
        Rnomics 📊 Palace
    
                       Back to Rnomics Platform
            
                       Open Session

1 warning:

Access restricted to public data.
Please sign in at Rnomics Platform to access your data.

Navigation

Home

Sequences

Sequence CHEK2.fAug05

GTCGTGATGTCTCGGGAGTCGGATGTTGAGGCTCAGCAGTCTCATGGCAGCAGTGCCTGTTCACAGCCCCATGGCAGCGTTACCCAGTCCCAAGGCTCCT CCTCACAGTCCCAGGGCATATCCAGCTCCTCTACCAGCACGATGCCAAACTCCAGCCAGTCCTCTCACTCCAGCTCTGGGACACTGAGCTCCTTAGAGAC AGTGTCCACTCAGGAACTCTATTCTATTCCTGAGGACCAAGAACCTGAGGACCAAGAACCTGAGGAGCCTACCCCTGCCCCCTGGGCTCGATTATGGGCC CTTCAGGATGGATTTGCCAATCTTGTTTTTGTCTTTTTTGATCTGACTGTAGATGATCAGTCAGTTTATCCTAAGGCATTAAGAGATGAATACATCATGT CAAAAACTCTTGGAAGTGGTGCCTGTGGAGAGGTAAAGCTGGCTTTCGAGAGGAAAACATGTAAGAAAGTAGCCATAAAGATCATCAGCAAAAGGAAGTT TGCTATTGGTTCAGCAAGAGAGGCAGACCCAGCTCTCAATGTTGAAACAGAAATAGAAATTTTGAAAAAGCTAAATCATCCTTGCATCATCAAGATTAAA AACTTTTTTGATGCAGAAGATTATTATATTGTTTTGGAATTGATGGAAGGGGGAGAGCTGTTTGACAAAGTGGTGGGGAATAAACGCCTGAAAGAAGCTA CCTGCAAGCTCTATTTTTACCAGATGCTCTTGGCTGTGCAGTACCTTCATGAAAACGGTATTATACACCGTGACTTAAAGCCAGAGAATGTTTTACTGTC ATCTCAAGAAGAGGACTGTCTTATAAAGATTACTGATTTTGGGCACTCCAAGATTTTGGGAGAGACCTCTCTCATGAGAACCTTATGTGGAACCCCCACC TACTTGGCGCCTGAAGTTCTTGTTTCTGTTGGGACTGCTGGGTATAACCGTGCTGTGGACTGCTGGAGTTTAGGAGTTATTCTTTTTATCTGCCTTAGTG GGTATCCACCTTTCTCTGAGCATAGGACTCAAGTGTCACTGAAGGATCAGATCACCAGTGGAAAATACAACTTCATTCCTGAAGTCTGGGCAGAAGTCTC AGAGAAAGCTCTGGACCTTGTCAAGAAGTTGTTGGTAGTGGATCCAAAGGCACGTTTTACGACAGAAGAAGCCTTAAGACACCCGTGGCTTCAGGATGAA GACATGAAGAGAAAGTTTCAAGATCTTCTGTCTGAGGAAAATGAATCCACAGCTCTACCCCAGGTTCTAGCCCAGCCTTCTACTAGTCGAAAGCGGCCCC GTGAAGGGGAAGCCGAGGGTGCCGAGACCACAAAGCGCCCAGCTGTGTGTGCTGCTGTGTTGTGAACTCCGTGGTTTGAACACGAAAGAAATGTACCTTC TTTCACTCTGTCATCTTTCTTTTCTTTGAGTCTGTTTTTTTATAGTTTGTATTTTAATTATGGGAATAATTGCTTTTTCACAGTCACTGATGTACAATTA AAAACCTGATGGAACCTGGGCTTTGTGCTTCTGCTTGATAATCGGTTCTTTAGTTGAATGGCTTTATTATTTATTTATTTGAGATGGAGTCTCACTCTGT TGCCCAGCCTGAATGAAGTGCAGTGGTGCAGGCTTGGCTCACTGCAACCTCTGCTTCCCAGGTTCAAGCGATTCTTGTGCCTCAGCCTCCTGAGTAGCTG GGATTACAGGTATGCACCACCATGCCTGTTAATTTTTATATATTTTG

CHEK2.u.f.13 (forward primer)
CHEK2.u.r.25 (reverse primer)
Multiple exon skipping

Frame 0

VVMSRESDVEAQQSHGSSACSQPHGSVTQSQGS SSQSQGISSSSTSTMPNSSQSSHSSSGTLSSLET VSTQELYSIPEDQEPEDQEPEEPTPAPWARLWA LQDGFANLVFVFFDLTVDDQSVYPKALRDEYIM SKTLGSGACGEVKLAFERKTCKKVAIKIISKRKF AIGSAREADPALNVETEIEILKKLNHPCIIKIK NFFDAEDYYIVLELMEGGELFDKVVGNKRLKEA TCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLS SQEEDCLIKITDFGHSKILGETSLMRTLCGTPT YLAPEVLVSVGTAGYNRAVDCWSLGVILFICLS GYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVS EKALDLVKKLLVVDPKARFTTEEALRHPWLQDE DMKRKFQDLLSEENESTALPQVLAQPSTSRKRP REGEAEGAETTKRPAVCAAVL*TPWFEHERNVPS FTLSSFFSLSLFFYSLYFNYGNNCFFTVTDVQL KT*WNLGFVLLLDNRFFS*MALLFIYLRWSLTL LPSLNEVQWCRLGSLQPLLPRFKRFLCLSLLSSW DYRYAPPCLLIFIYF

Frame 1

S*CLGSRMLRLSSLMAAVPVHSPMAALPSPKAP PHSPRAYPAPLPARCQTPASPLTPALGH*AP*R QCPLRNSILFLRTKNLRTKNLRSLPLPPGLDYGP FRMDLPILFLSFLI*L*MISQFILRH*EMNTSC QKLLEVVPVER*SWLSRGKHVRK*P*RSSAKGS LLLVQQERQTQLSMLKQK*KF*KS*IILASSRLK TFLMQKIIILFWN*WKGESCLTKWWGINA*KKL PASSIFTRCSWLCSTFMKTVLYTVT*SQRMFYC HLKKRTVL*RLLILGTPRFWERPLS*EPYVEPPP TWRLKFLFLLGLLGITVLWTAGV*ELFFLSALV GIHLSLSIGLKCH*RIRSPVENTTSFLKSGQKS QRKLWTLSRSCW*WIQRHVLRQKKP*DTRGFRMK T*RESFKIFCLRKMNPQLYPRF*PSLLLVESGP VKGKPRVPRPQSAQLCVLLCCELRGLNTKEMYL LSLCHLSFL*VCFFIVCILIMGIIAFSQSLMYN* KPDGTWALCFCLIIGSLVEWLYYLFI*DGVSLC CPA*MKCSGAGLAHCNLCFPGSSDSCASAS*VA GITGMHHHAC*FLYIL

Frame 2

RDVSGVGC*GSAVSWQQCLFTAPWQRYPVPRLL LTVPGHIQLLYQHDAKLQPVLSLQLWDTELLRD SVHSGTLFYS*GPRT*GPRT*GAYPCPLGSIMG PSGWICQSCFCLF*SDCR*SVSLS*GIKR*IHHV KNSWKWCLWRGKAGFREENM*ESSHKDHQQKEV CYWFSKRGRPSSQC*NRNRNFEKAKSSLHHQD* KLF*CRRLLYCFGIDGRGRAV*QSGGE*TPERSY LQALFLPDALGCAVPS*KRYYTP*LKARECFTV ISRRGLSYKDY*FWALQDFGRDLSHENLMWNPH LLGA*SSCFCWDCWV*PCCGLLEFRSYSFYLP*W VSTFL*A*DSSVTEGSDHQWKIQLHS*SLGRSL RESSGPCQEVVGSGSKGTFYDRRSLKTPVASG* RHEEKVSRSSV*GK*IHSSTPGSSPAFY*SKAAP *RGSRGCRDHKAPSCVCCCVVNSVV*TRKKCTF FHSVIFLFFESVFL*FVF*LWE*LLFHSH*CTI KNLMEPGLCASA**SVL*LNGFIIYLFEMESHSV AQPE*SAVVQAWLTATSASQVQAILVPQPPE*L GLQVCTTMPVNFYIF

Sequence CHEK2.hAug05

GCCTTCTCTTCCGCCAGCCAGATCCGTCCTCCCCTCTCGCAGGCCAGACCTCGACGTGTCTCTCGCCCGGGCCCGTTTCCCGAAACCGTCGCTCGTACCA GTCCATAAGGCTGAAGTAGTCTCGAGTGGGGTCAGGTGCCTGCAGCGCTCGGCACTGTGGGCAGAAGAACCTGTCCTCCCGCCCGGGGCCCCATGGGCCG CCGCAGTTCCAACAGCGGGGATAATTGCTTCCCGCCTGCGACGCAGCATCGCAGCTTAGCGGTCTCCTTCTGGGAACCCCTGTCGGCCAAAACCCCCACA CCCGGAGCAAAGCCCCGGCTCTCCCCCGCCACATCTGGCCGGCGGCCTATCTAGCCGTGGTCACTCGTGGGGAAAAGCAAAGAGAGCGTCTAACCAGACT AATGTTGCTGATTGGCTGGGGAGTCGAGGGGGCGGGATCACCCGAGGGGAACCCGGGTTCTAAGTTCCGCTCTCCCTTCTAAACTACAACTCCCAGGAGG CATTGAGGCGGCGCCTGACGGCCACATCTGCTGCTCCTCATTGGTCCGGCGGCAGGGGAGGGGGTTTTGATTGGCTGAGGGTGGAGTTTGTATCTGCAGG TTTAGCGCCACTCTGCTGGCTGAGGCTGCGGAGAGTGTGCGGCTCCAGGTGGGCTCACGCGGTCGTGATGTCTCGGGAGTCGGATGTTGAGGCTCAGCAG TCTCATGGCAGCAGTGCCTGTTCACAGCCCCATGGCAGCGTTACCCAGTCCCAAGGCTCCTCCTCACAGTCCCAGGGCATATCCAGCTCCTCTACCAGCA CGATGCCAAACTCCAGCCAGTCCTCTCACTCCAGCTCTGGGACACTGAGCTCCTTAGAGACAGTGTCCACTCAGGAACTCTATTCTATTCCTGAGGACCA AGAACCTGAGGACCAAGAACCTGAGGAGCCTACCCCTGCCCCCTGGGCTCGATTATGGGCCCTTCAGGATGGATTTGCCAATCTTGAATGTGTGAATGAC AACTACTGGTTTGGGAGGGACAAAAGCTGTGAATATTGCTTTGATGAACCACTGCTGAAAAGAACAGATAAATACCGAACATACAGCAAGAAACACTTTC GGATTTTCAGGGAGGAAAATTTGTCCTGTCCTTACAGAATATGGTTTAAGTGAGTAAAGATGAGTAAGTTGCTGGGCGTGGTGGCTCACACCTGTAATCC CAGCACTTTGGGAGGCTGAGGCGGATGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGACCCACATGGAGAAACCCTGTCTCTACTAAAAATACAAA ATAAGCCGGGCATGGTGGTGCATGCCTGTAATCCCAGCTATTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCA AGATCGTGCCATTGCACTCTAGCCTGGGCAACAAGAGTGAAACTCTGTCTCAAAACAAAAAAAAAGATGATTTTTGTCTTTTTTGATCTGACTGTAGATG ATCAGTCAGTTTATCCTAAGGCATTAAGAGATGAATACATCATGTCAAAAACTCTTGGAAGTGGTGCCTGTGGAGAGGTAAAGCTGGCTTTCGAGAGGAA AACATGTAAGAAAGTAGCCATAAAGATCATCAGCAAAAGGAAGTTTGCTATTGGTTCAGCAAGAGAGGCAGACCCAGCTCTCAATGTTGAAACAGAAATA GAAATTTTGAAAAAGCTAAATCATCCTTGCATCATCAAGATTAAAAACTTTTTTGATGCAGAAGATTATTATATTGTTTTGGAATTGATGGAAGGGGGAG AGCTGTTTGACAAAGTGGTGGGGAATAAACGCCTGAAAGAAGCTACCTGCAAGCTCTATTTTTACCAGATGCTCTTGGCTGTGCAGTACCTTCATGAAAA CGGTATTATACACCGTGACTTAAAGCCAGAGAATGTTTTACTGTCATCTCAAGAAGAGGACTGTCTTATAAAGATTACTGATTTTGGGCACTCCAAGATT TTGGGAGAGACCTCTCTCATGAGAACCTTATGTGGAACCCCCACCTACTTGGCGCCTGAAGTTCTTGTTTCTGTTGGGACTGCTGGGTATAACCGTGCTG TGGACTGCTGGAGTTTAGGAGTTATTCTTTTTATCTGCCTTAGTGGGTATCCACCTTTCTCTGAGCATAGGACTCAAGTGTCACTGAAGGATCAGATCAC CAGTGGAAAATACAACTTCATTCCTGAAGTCTGGGCAGAAGTCTCAGAGAAAGCTCTGGACCTTGTCAAGAAGTTGTTGGTAGTGGATCCAAAGGCACGT TTTACGACAGAAGAAGCCTTAAGACACCCGTGGCTTCAGGATGAAGACATGAAGAGAAAGTTTCAAGATCTTCTGTCTGAGGAAAATGAATCCACAGCTC TACCCCAGGTTCTAGCCCAGCCTTCTACTAGTCGAAAGCGGCCCCGTGAAGGGGAAGCCGAGGGTGCCGAGACCACAAAGCGCCCAGCTGTGTGTGCTGC TGTGTTGTGAACTCCGTGGTTTGAACACGAAAGAAATGTACCTTCTTTCACTCTGTCATCTTTCTTTTCTTTGAGTCTGTTTTTTTATAGTTTGTATTTT AATTATGGGAATAATTGCTTTTTCACAGTCACTGATGTACAATTAAAAACCTGATGGAACCTGGGCTTTGTGCTTCTGCTTGATAATCGGTTCTTTAGTT GAATGGCTTTATTATTTATTTATTTGAGATGGAGTCTCACTCTGTTGCCCAGCCTGAATGAAGTGCAGTGGTGCAGGCTTGGCTCACTGCAACCTCTGCT TCCCAGGTTCAAGCGATTCTTGTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTATGCACCACCATGCCTGTTAATTTTTATATATTTTG

CHEK2.u.f.13 (forward primer)
CHEK2.u.r.25 (reverse primer)
Multiple exon skipping

Frame 0

AFSSASQIRPPLSQARPRRVSRPGPFPETVART SP*G*SSLEWGQVPAALGTVGRRTCPPARGPMGR RSSNSGDNCFPPATQHRSLAVSFWEPLSAKTPT PGAKPRLSPATSGRRPI*PWSLVGKSKESV*PD *CC*LAGESRGRDHPRGTRVLSSALPSKLQLPGG IEAAPDGHICCSSLVRRQGRGF*LAEGGVCICR FSATLLAEAAESVRLQVGSRGRDVSGVGC*GSA VSWQQCLFTAPWQRYPVPRLLLTVPGHIQLLYQH DAKLQPVLSLQLWDTELLRDSVHSGTLFYS*GP RT*GPRT*GAYPCPLGSIMGPSGWICQS*MCE* QLLVWEGQKL*ILL**TTAEKNR*IPNIQQETLS DFQGGKFVLSLQNMV*VSKDE*VAGRGGSHL*S QHFGRLRRMDHLRSGVRDQPDPHGETLSLLKIQ NKPGMVVHACNPSYSGG*GRRIA*TREAEVAVSQ DRAIAL*PGQQE*NSVSKQKKR*FLSFLI*L*M ISQFILRH*EMNTSCQKLLEVVPVER*SWLSRG KHVRK*P*RSSAKGSLLLVQQERQTQLSMLKQK* KF*KS*IILASSRLKTFLMQKIIILFWN*WKGE SCLTKWWGINA*KKLPASSIFTRCSWLCSTFMK TVLYTVT*SQRMFYCHLKKRTVL*RLLILGTPRF WERPLS*EPYVEPPPTWRLKFLFLLGLLGITVL WTAGV*ELFFLSALVGIHLSLSIGLKCH*RIRS PVENTTSFLKSGQKSQRKLWTLSRSCW*WIQRHV LRQKKP*DTRGFRMKT*RESFKIFCLRKMNPQL YPRF*PSLLLVESGPVKGKPRVPRPQSAQLCVL LCCELRGLNTKEMYLLSLCHLSFL*VCFFIVCIL IMGIIAFSQSLMYN*KPDGTWALCFCLIIGSLV EWLYYLFI*DGVSLCCPA*MKCSGAGLAHCNLC FPGSSDSCASAS*VAGITGMHHHAC*FLYIL

Frame 1

PSLPPARSVLPSRRPDLDVSLARARFPKPSLVP VHKAEVVSSGVRCLQRSALWAEEPVLPPGAPWA AAVPTAGIIASRLRRSIAA*RSPSGNPCRPKPPH PEQSPGSPPPHLAGGLSSRGHSWGKAKRASNQT NVADWLGSRGGGITRGEPGF*VPLSLLNYNSQE ALRRRLTATSAAPHWSGGRGGGFDWLRVEFVSAG LAPLCWLRLRRVCGSRWAHAVVMSRESDVEAQQ SHGSSACSQPHGSVTQSQGSSSQSQGISSSSTS TMPNSSQSSHSSSGTLSSLETVSTQELYSIPEDQ EPEDQEPEEPTPAPWARLWALQDGFANLECVND NYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHF RIFREENLSCPYRIWFK*VKMSKLLGVVAHTCNP STLGG*GGWIT*GQEFETSLTHMEKPCLY*KYK ISRAWWCMPVIPAIREAEAGESLEPGRQRLQ*A KIVPLHSSLGNKSETLSQNKKKDDFCLF*SDCR* SVSLS*GIKR*IHHVKNSWKWCLWRGKAGFREE NM*ESSHKDHQQKEVCYWFSKRGRPSSQC*NRN RNFEKAKSSLHHQD*KLF*CRRLLYCFGIDGRGR AV*QSGGE*TPERSYLQALFLPDALGCAVPS*K RYYTP*LKARECFTVISRRGLSYKDY*FWALQD FGRDLSHENLMWNPHLLGA*SSCFCWDCWV*PCC GLLEFRSYSFYLP*WVSTFL*A*DSSVTEGSDH QWKIQLHS*SLGRSLRESSGPCQEVVGSGSKGT FYDRRSLKTPVASG*RHEEKVSRSSV*GK*IHSS TPGSSPAFY*SKAAP*RGSRGCRDHKAPSCVCC CVVNSVV*TRKKCTFFHSVIFLFFESVFL*FVF *LWE*LLFHSH*CTIKNLMEPGLCASA**SVL*L NGFIIYLFEMESHSVAQPE*SAVVQAWLTATSA SQVQAILVPQPPE*LGLQVCTTMPVNFYIF

Frame 2

LLFRQPDPSSPLAGQTSTCLSPGPVSRNRRSYQ SIRLK*SRVGSGACSARHCGQKNLSSRPGPHGP PQFQQRG*LLPACDAASQLSGLLLGTPVGQNPH TRSKAPALPRHIWPAAYLAVVTRGEKQRERLTRL MLLIGWGVEGAGSPEGNPGSKFRSPF*TTTPRR H*GGA*RPHLLLLIGPAAGEGVLIG*GWSLYLQ V*RHSAG*GCGECAAPGGLTRS*CLGSRMLRLSS LMAAVPVHSPMAALPSPKAPPHSPRAYPAPLPA RCQTPASPLTPALGH*AP*RQCPLRNSILFLRT KNLRTKNLRSLPLPPGLDYGPFRMDLPILNV*MT TTGLGGTKAVNIALMNHC*KEQINTEHTARNTF GFSGRKICPVLTEYGLSE*R*VSCWAWWLTPVI PALWEAEADGSPEVRSSRPA*PTWRNPVSTKNTK *AGHGGACL*SQLFGRLRQENRLNPGGRGCSEP RSCHCTLAWATRVKLCLKTKKKMIFVFFDLTVD DQSVYPKALRDEYIMSKTLGSGACGEVKLAFERK TCKKVAIKIISKRKFAIGSAREADPALNVETEI EILKKLNHPCIIKIKNFFDAEDYYIVLELMEGG ELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHEN GIIHRDLKPENVLLSSQEEDCLIKITDFGHSKI LGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRA VDCWSLGVILFICLSGYPPFSEHRTQVSLKDQIT SGKYNFIPEVWAEVSEKALDLVKKLLVVDPKAR FTTEEALRHPWLQDEDMKRKFQDLLSEENESTA LPQVLAQPSTSRKRPREGEAEGAETTKRPAVCAA VL*TPWFEHERNVPSFTLSSFFSLSLFFYSLYF NYGNNCFFTVTDVQLKT*WNLGFVLLLDNRFFS *MALLFIYLRWSLTLLPSLNEVQWCRLGSLQPLL PRFKRFLCLSLLSSWDYRYAPPCLLIFIYF