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Sequences

Sequence FGFR4.cAug05

CGGGGTGGGACAGGAGGTGGGCCGCTCGCGGCCACGCCGCCGTCGCGGGTACATTCCTCGCTCCCGGCCGAGGAGCGCTCGGGCTGTCTGCGGACCCTGC CGCGTGCAGGGGTCGCGGCCGGCTGGAGCTGGGAGTGAGGCGGCGGAGGAGCCAGGAAGGCAGTTGGTGGGAAGTCCAGCTTGGGTCCCTGAGAGCTGTG AGAAGGAGATGCGGCTGCTGCTGGCCCTGTTGGGGGTCCTGCTGAGTGTGCCTGGGCCTCCAGTCTTGTCCCTGGAGGCCTCTGAGGAAGTGGAGCTTGA GCCCTGCCTGGCTCCCAGCCTGGAGCAGCAAGAGCAGGAGCTGACAGTAGCCCTTGGGCAGCCTGTGCGTCTGTGCTGTGGGCGGGCTGAGCGTGGTGGC CACTGGTACAAGGAGGGCAGTCGCCTGGCACCTGCTGGCCGTGTACGGGGCTGGAGGGGCCGCCTAGAGATTGCCAGCTTCCTACCTGAGGATGCTGGCC GCTACCTCTGCCTGGCACGAGGCTCCATGATCGTCCTGCAGAATCTCACCTTGATTACAGGTGACTCCTTGACCTCCAGCAACGATGATGAGGACCCCAA GTCCCATAGGGACCCCTCGAATAGGCACAGTTACCCCCAGCAAGCACCCTACTGGACACACCCCCAGCGCATGGAGAAGAAACTGCATGCAGTACCTGCG GGGAACACCGTCAAGTTCCGCTGTCCAGCTGCAGGCAACCCCACGCCCACCATCCGCTGGCTTAAGGATGGACAGGCCTTTCATGGGGAGAACCGCATTG GAGGCATTCGGCTGCGCCATCAGCACTGGAGTCTCGTGATGGAGAGCGTGGTGCCCTCGGACCGCGGCACATACACCTGCCTGGTAGAGAACGCTGTGGG CAGCATCCGCTATAACTACCTGCTAGATGTGCTGGAGCGGTCCCCGCACCGGCCCATCCTGCAGGCCGGGCTCCCGGCCAACACCACAGCCGTGGTGGGC AGCGACGTGGAGCTGCTGTGCAAGGTGTACAGCGATGCCCAGCCCCACATCCAGTGGCTGAAGCACATCGTCATCAACGGCAGCAGCTTCGGAGCCGACG GTTTCCCCTATGTGCAAGTCCTAAAGACTGCAGACATCAATAGCTCAGAGGTGGAGGTCCTGTACCTGCGGAACGTGTCAGCCGAGGACGCAGGCGAGTA CACCTGCCTCGCAGGCAATTCCATCGGCCTCTCCTACCAGTCTGCCTGGCTCACGGTGCTGCCAGGTACTGGGCGCATCCCCCACCTCACATGTGACAGC CTGACTCCAGCAGGCAGAACCAAGTCTCCCACTTTGCAGTTCTCCCTGGAGTCAGGCTCTTCCGGCAAGTCAAGCTCATCCCTGGTACGAGGCGTGCGTC TCTCCTCCAGCGGCCCCGCCTTGCTCGCCGGCCTCGTGAGTCTAGATCTACCTCTCGACCCACTATGGGAGTTCCCCCGGGACAGGCTGGTGCTTGGGAA GCCCCTAGGCGAGGGCTGCTTTGGCCAGGTAGTACGTGCAGAGGCCTTTGGCATGGACCCTGCCCGGCCTGACCAAGCCAGCACTGTGGCCGTCAAGATG CTCAAAGACAACGCCTCTGACAAGGACCTGGCCGACCTGGTCTCGGAGATGGAGGTGATGAAGCTGATCGGCCGACACAAGAACATCATCAACCTGCTTG GTGTCTGCACCCAGGAAGGGCCCCTGTACGTGATCGTGGAGTGCGCCGCCAAGGGAAACCTGCGGGAGTTCCTGCGGGCCCGGCGCCCCCCAGGCCCCGA CCTCAGCCCCGACGGTCCTCGGAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGGTCTCCTGCGCCTACCAGGTGGCCCGAGGCATGCAGTATCTGGAG TCCCGGAAGTGTATCCACCGGGACCTGGCTGCCCGCAATGTGCTGGTGACTGAGGACAATGTGATGAAGATTGCTGACTTTGGGCTGGCCCGCGGCGTCC ACCACATTGACTACTATAAGAAAACCAGCAACGGCCGCCTGCCTGTGAAGTGGATGGCGCCCGAGGCCTTGTTTGACCGGGTGTACACACACCAGAGTGA CGTGTGGTCTTTTGGGATCCTGCTATGGGAGATCTTCACCCTCGGGGGCTCCCCGTATCCTGGCATCCCGGTGGAGGAGCTGTTCTCGCTGCTGCGGGAG GGACATCGGATGGACCGACCCCCACACTGCCCCCCAGAGCTGTACGGGCTGATGCGTGAGTGCTGGCACGCAGCGCCCTCCCAGAGGCCTACCTTCAAGC AGCTGGTGGAGGCGCTGGACAAGGTCCTGCTGGCCGTCTCTGAGGAGTACCTCGACCTCCGCCTGACCTTCGGACCCTATTCCCCCTCTGGTGGGGACGC CAGCAGCACCTGCTCCTCCAGCGATTCTGTCTTCAGCCACGACCCCCTGCCATTGGGATCCAGCTCCTTCCCCTTCGGGTCTGGGGTGCAGACATGAGCA AGGCTCAAGGCTGTGCAGGCACATAGGCTGGTGGCCTTGGGCCTTGGGGCTCAGCCACAGCCTGACACAGTGCTCGACCTTGATAGCATGGGGCCCCTGG CCCAGAGTTGCTGTGCCGTGTCCAAGGGCCGTGCCCTTGCCCTTGGAGCTGCCGTGCCTGTGTCCTGATGGCCCAAATGTCAGGGTTCTGCTCGGCTTCT TGGACCTTGGCGCTTAGTCCCCATCCCGGGTTTGGCTGAGCCTGGCTGGAGAGCTGCTATGCTAAACCTCCTGCCTCCCAATACCAGCAGGAGGTTCTGG GCCTCTGAACCCCCTTTCCCCACACCTCCCCCTGCTGCTGCTGCCCCAGCGTCTTGACGGGAGCATTGGCCCCTGAGCCCAGAGAAGCTGGAAGCCTGCC GAAAACAGGAGCAAATGGCGTTTTATAAATTATTTTTTTGAAATAAAGCTCTGTGTGCCTGGGTC

FGFR4.F8 (forward primer)
FGFR4.R12 (reverse primer)
Alternative acceptor

Frame 0

RGGTGGGPLAATPPSRVHSSLPAEERSGCLRTL PRAGVAAGWSWE*GGGGARKAVGGKSSLGP*EL* EGDAAAAGPVGGPAECAWASSLVPGGL*GSGA* ALPGSQPGAARAGADSSPWAACASVLWAG*AWW PLVQGGQSPGTCWPCTGLEGPPRDCQLPT*GCWP LPLPGTRLHDRPAESHLDYR*LLDLQQR**GPQ VP*GPLE*AQLPPASTLLDTPPAHGEETACSTC GEHRQVPLSSCRQPHAHHPLA*GWTGLSWGEPHW RHSAAPSALESRDGERGALGPRHIHLPGRERCG QHPL*LPARCAGAVPAPAHPAGRAPGQHHSRGG QRRGAAVQGVQRCPAPHPVAEAHRHQRQQLRSRR FPLCASPKDCRHQ*LRGGGPVPAERVSRGRRRV HLPRRQFHRPLLPVCLAHGAARYWAHPPPHM*Q PDSSRQNQVSHFAVLPGVRLFRQVKLIPGTRRAS LLQRPRLARRPRESRSTSRPTMGVPPGQAGAWE APRRGLLWPGSTCRGLWHGPCPA*PSQHCGRQD AQRQRL*QGPGRPGLGDGGDEADRPTQEHHQPAW CLHPGRAPVRDRGVRRQGKPAGVPAGPAPPRPR PQPRRSSEQ*GAALLPSPGLLRLPGGPRHAVSG VPEVYPPGPGCPQCAGD*GQCDEDC*LWAGPRRP PH*LL*ENQQRPPACEVDGARGLV*PGVHTPE* RVVFWDPAMGDLHPRGLPVSWHPGGGAVLAAAG GTSDGPTPTLPPRAVRADA*VLARSALPEAYLQA AGGGAGQGPAGRL*GVPRPPPDLRTLFPLWWGR QQHLLLQRFCLQPRPPAIGIQLLPLRVWGADMS KAQGCAGT*AGGLGPWGSATA*HSARP**HGAPG PELLCRVQGPCPCPWSCRACVLMAQMSGFCSAS WTLALSPHPGFG*AWLESCYAKPPASQYQQEVL GL*TPFPHTSPCCCCPSVLTGALAPEPREAGSLP KTGANGVL*IIFLK*SSVCLG

Frame 1

GVGQEVGRSRPRRRRGYIPRSRPRSARAVCGPC RVQGSRPAGAGSEAAEEPGRQLVGSPAWVPESC EKEMRLLLALLGVLLSVPGPPVLSLEASEEVELE PCLAPSLEQQEQELTVALGQPVRLCCGRAERGG HWYKEGSRLAPAGRVRGWRGRLEIASFLPEDAG RYLCLARGSMIVLQNLTLITGDSLTSSNDDEDPK SHRDPSNRHSYPQQAPYWTHPQRMEKKLHAVPA GNTVKFRCPAAGNPTPTIRWLKDGQAFHGENRI GGIRLRHQHWSLVMESVVPSDRGTYTCLVENAVG SIRYNYLLDVLERSPHRPILQAGLPANTTAVVG SDVELLCKVYSDAQPHIQWLKHIVINGSSFGAD GFPYVQVLKTADINSSEVEVLYLRNVSAEDAGEY TCLAGNSIGLSYQSAWLTVLPGTGRIPHLTCDS LTPAGRTKSPTLQFSLESGSSGKSSSSLVRGVR LSSSGPALLAGLVSLDLPLDPLWEFPRDRLVLGK PLGEGCFGQVVRAEAFGMDPARPDQASTVAVKM LKDNASDKDLADLVSEMEVMKLIGRHKNIINLL GVCTQEGPLYVIVECAAKGNLREFLRARRPPGPD LSPDGPRSSEGPLSFPVLVSCAYQVARGMQYLE SRKCIHRDLAARNVLVTEDNVMKIADFGLARGV HHIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSD VWSFGILLWEIFTLGGSPYPGIPVEELFSLLRE GHRMDRPPHCPPELYGLMRECWHAAPSQRPTFK QLVEALDKVLLAVSEEYLDLRLTFGPYSPSGGDA SSTCSSSDSVFSHDPLPLGSSSFPFGSGVQT*A RLKAVQAHRLVALGLGAQPQPDTVLDLDSMGPL AQSCCAVSKGRALALGAAVPVS*WPKCQGSARLL GPWRLVPIPGLAEPGWRAAMLNLLPPNTSRRFW ASEPPFPTPPPAAAAPAS*REHWPLSPEKLEAC RKQEQMAFYKLFF*NKALCAWV

Frame 2

GWDRRWAARGHAAVAGTFLAPGRGALGLSADPA ACRGRGRLELGVRRRRSQEGSWWEVQLGSLRAV RRRCGCCWPCWGSC*VCLGLQSCPWRPLRKWSL SPAWLPAWSSKSRS*Q*PLGSLCVCAVGGLSVVA TGTRRAVAWHLLAVYGAGGAA*RLPASYLRMLA ATSAWHEAP*SSCRISP*LQVTP*PPATMMRTP SPIGTPRIGTVTPSKHPTGHTPSAWRRNCMQYLR GTPSSSAVQLQATPRPPSAGLRMDRPFMGRTAL EAFGCAISTGVS*WRAWCPRTAAHTPAW*RTLW AASAITTC*MCWSGPRTGPSCRPGSRPTPQPWWA ATWSCCARCTAMPSPTSSG*STSSSTAAASEPT VSPMCKS*RLQTSIAQRWRSCTCGTCQPRTQAS TPASQAIPSASPTSLPGSRCCQVLGASPTSHVTA *LQQAEPSLPLCSSPWSQALPASQAHPWYEACV SPPAAPPCSPAS*V*IYLSTHYGSSPGTGWCLG SP*ARAALAR*YVQRPLAWTLPGLTKPALWPSRC SKTTPLTRTWPTWSRRWR**S*SADTRTSSTCL VSAPRKGPCT*SWSAPPRETCGSSCGPGAPQAP TSAPTVLGAVRGRSPSQSWSPAPTRWPEACSIWS PGSVSTGTWLPAMCW*LRTM**RLLTLGWPAAS TTLTTIRKPATAACL*SGWRPRPCLTGCTHTRV TCGLLGSCYGRSSPSGAPRILASRWRSCSRCCGR DIGWTDPHTAPQSCTG*CVSAGTQRPPRGLPSS SWWRRWTRSCWPSLRSTSTSA*PSDPIPPLVGT PAAPAPPAILSSATTPCHWDPAPSPSGLGCRHEQ GSRLCRHIGWWPWALGLSHSLTQCSTLIAWGPW PRVAVPCPRAVPLPLELPCLCPDGPNVRVLLGF LDLGA*SPSRVWLSLAGELLC*TSCLPIPAGGSG PLNPLSPHLPLLLLPQRLDGSIGP*AQRSWKPA ENRSKWRFINYFFEIKLCVPG

Sequence FGFR4.eAug05

FGFR4.F8 (forward primer)
FGFR4.R12 (reverse primer)
Alternative acceptor

Frame 0

RGGTGGGPLAATPPSRVHSSLPAEERSGCLRTL PRAGVAAGWSWE*GGGGAR*GGARKAVGGKSSLG P*EL*EGDAAAAGPVGGPAECAWASSLVPGGL* GSGA*LLDLQQR**GPQVP*GPLE*AQLPPAST LLDTPPAHGEETACSTCGEHRQVPLSSCRQPHAH HPLA*GWTGLSWGEPHWRHSAAPSALESRDGER GALGPRHIHLPGRERCGQHPL*LPARCAGAVPA PAHPAGRAPGQHHSRGGQRRGAAVQGVQRCPAPH PVAEAHRHQRQQLRSRRFPLCASPKDCRHQ*LR GGGPVPAERVSRGRRRVHLPRRQFHRPLLPVCL AHGAARGGPHMDRSSARGQVYGHHPVRVGLPGLG CAPAAGRAVSRAGAPRPAPPPARHCAEALPLPS GPTGTGRIPHLTCDSLTPAGRTKSPTLQFSLE

Frame 1

GVGQEVGRSRPRRRRGYIPRSRPRSARAVCGPC RVQGSRPAGAGSEAAEEPGEEEPGRQLVGSPAW VPESCEKEMRLLLALLGVLLSVPGPPVLSLEASE EVELDSLTSSNDDEDPKSHRDPSNRHSYPQQAP YWTHPQRMEKKLHAVPAGNTVKFRCPAAGNPTP TIRWLKDGQAFHGENRIGGIRLRHQHWSLVMESV VPSDRGTYTCLVENAVGSIRYNYLLDVLERSPH RPILQAGLPANTTAVVGSDVELLCKVYSDAQPH IQWLKHIVINGSSFGADGFPYVQVLKTADINSSE VEVLYLRNVSAEDAGEYTCLAGNSIGLSYQSAW LTVLPEEDPTWTAAAPEARYTDIILYASGSLAL AVLLLLAGLYRGQALHGRHPRPPATVQKLSRFPL ARQVLGASPTSHVTA*LQQAEPSLPLCSSPW

Frame 2

GWDRRWAARGHAAVAGTFLAPGRGALGLSADPA ACRGRGRLELGVRRRRSQVRRSQEGSWWEVQLG SLRAVRRRCGCCWPCWGSC*VCLGLQSCPWRPL RKWSLTP*PPATMMRTPSPIGTPRIGTVTPSKHP TGHTPSAWRRNCMQYLRGTPSSSAVQLQATPRP PSAGLRMDRPFMGRTALEAFGCAISTGVS*WRA WCPRTAAHTPAW*RTLWAASAITTC*MCWSGPRT GPSCRPGSRPTPQPWWAATWSCCARCTAMPSPT SSG*STSSSTAAASEPTVSPMCKS*RLQTSIAQ RWRSCTCGTCQPRTQASTPASQAIPSASPTSLPG SRCCQRRTPHGPQQRPRPGIRTSSCTRRAPWPW LCSCCWPGCIEGRRSTAGTPARPPLCRSSPASL WPDRYWAHPPPHM*QPDSSRQNQVSHFAVLPG