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Sequences

Sequence NM_172337

CCTCCGAAGCAGTAAACCAGCCCCTCTGTTTGTTTGTTTGCTTTGCCCTTAGTTCCACTGCTCCAAACCCACCCACCAAGGACTCTGAACCTGTCCACCC
CGGGCGCATCAAGATCTTCCAGCTGGGTACCCCCGATTTGGGCCGACTTTGCACCTCCAAACAACCTTAGCATGATGTCTTATCTTAAGCAACCGCCTTA
CGCAGTCAATGGGCTGAGTCTGACCACTTCGGGTATGGACTTGCTGCACCCCTCCGTGGGCTACCCGGCCACCCCCCGGAAACAGCGCCGGGAGAGGACG
ACGTTCACTCGGGCGCAGCTAGATGTGCTGGAAGCACTGTTTGCCAAGACCCGGTACCCAGACATCTTCATGCGAGAGGAGGTGGCACTGAAAATCAACT
TGCCCGAGTCGAGGGTGCAGGTATGGTTTAAGAATCGAAGAGCTAAGTGCCGCCAACAACAGCAACAACAGCAGAATGGAGGTCAAAACAAAGTGAGACC
TGCCAAAAAGAAGACATCTCCAGCTCGGGAAGTGAGTTCAGAGAGTGGAACAAGTGGCCAATTCACTCCCCCCTCTAGCACCTCAGTCCCGACCATTGCC
AGCAGCAGTGCTCCTGTGTCTATCTGGAGCCCAGCTTCCATCTCCCCACTGTCAGATCCCTTGTCCACCTCCTCTTCCTGCATGCAGAGGTCCTATCCCA
TGACCTATACTCAGGCTTCAGGTTATAGTCAAGGATATGCTGGCTCAACTTCCTACTTTGGGGGCATGGACTGTGGATCATATTTGACCCCTATGCATCA
CCAGCTTCCCGGACCAGGGGCCACACTCAGTCCCATGGGTACCAATGCAGTCACCAGCCATCTCAATCAGTCCCCAGCTTCTCTTTCCACCCAGGGATAT
GGAGCTTCAAGCTTGGGTTTTAACTCAACCACTGATTGCTTGGATTATAAGGACCAAACTGCCTCCTGGAAGCTTAACTTCAATGCTGACTGCTTGGATT
ATAAAGATCAGACATCCTCGTGGAAATTCCAGGTTTTGTGAAGACCTGTAGAACCTCTTTTTGTGGGTGATTTTTAAATATACTGGGCTGGACATTCCAG
TTTTAGCCAGGCATTGGTTAAAAGAGTTAGATGGGATGATGCTCAGACTCATCTGATCAAAGTTCCGAGAGGCATAGAAGGAAAAACGAAGGGCCTTAGA
GGGGCCTACAAACCAGCAACATGAAATGGACAAACCAATCTGCTTAAGATCCTGTCATAGTTTTAGATCATTGGTTATCCTGATTTGCAAAGTGATCAAA
AGCATTCTAGCCATGTGCAACCAAACACCACCAAAAATAAAATCAAACAAAACTAAGTTGTGAAGGAAGGGAGGGAAGGTCATAGCCTTCTTAAGCAGAG
GTGTTCCATTGTTTTAGCCAATCCTTGGTTGAATCTTAGGAATGAACAGTGTCTCAAGCTCATTCACGTTTCATGACCAACTGGTAGTTGGCACTGAAAA
AACTTTTCAGGGCTGTGTGAATTGTGTGACTGATTGTCCTAGATGCACTACTTTATTTAAAAAATAATGTTCATAAGGAGTCAATATGTAGTTTAAGAGA
CAATCAGTGTGTGTCTTATAAATGGTACATCTGTGGTTTTTAATCTGTGCTAGACTTCAAAACTGTGATCTCCTGTTATTGTATGCAACCTTGAACTCCA
CCTCTGCAGGGGTTCTTCTGTGATTAAATAGGTTATAATTATAAGCAAAATTCAGAGCAACTGAGTACTGATCTAAAAAGATTACCTTTGGCTGGAGGTG
AGCTGCACTGAAACTTTACGACAAAATGTCTCTGGACAAAGAGAGTCAGAGAAGAGAAGCAAAAGGACACTAATTCATCTGTAATTTACTGTTGGTAAGC
CTAGCAGTAAAGAGACATTGGTCAATTGCTCTGACCCTGATGAATTATTAAACTGAGATCATTGTCGTTTATGCTTGCAGATGTTAAATGGAAAAGTTAT
ATATGCATAAACCTTTTCTTCCTGGATTTGGCAGATATGTATAATTATATTAAAATGGTTCTAGCACAA
  • refseq_OTX2.F1 (forward primer)
  • refseq_OTX2.R1 (reverse primer)
  • Alternative acceptor

Frame 0

PPKQ*TSPSVCLFALPLVPLLQTHPPRTLNLST
PGASRSSSWVPPIWADFAPPNNLSMMSYLKQPPY
AVNGLSLTTSGMDLLHPSVGYPATPRKQRRERT
TFTRAQLDVLEALFAKTRYPDIFMREEVALKIN
LPESRVQVWFKNRRAKCRQQQQQQQNGGQNKVRP
AKKKTSPAREVSSESGTSGQFTPPSSTSVPTIA
SSSAPVSIWSPASISPLSDPLSTSSSCMQRSYP
MTYTQASGYSQGYAGSTSYFGGMDCGSYLTPMHH
QLPGPGATLSPMGTNAVTSHLNQSPASLSTQGY
GASSLGFNSTTDCLDYKDQTASWKLNFNADCLD
YKDQTSSWKFQVL*RPVEPLFVGDF*IYWAGHSS
FSQALVKRVRWDDAQTHLIKVPRGIEGKTKGLR
GAYKPAT*NGQTNLLKILS*F*IIGYPDLQSDQ
KHSSHVQPNTTKNKIKQN*VVKEGREGHSLLKQR
CSIVLANPWLNLRNEQCLKLIHVS*PTGSWH*K
NFSGLCELCD*LS*MHYFI*KIMFIRSQYVV*E
TISVCLINGTSVVFNLC*TSKL*SPVIVCNLELH
LCRGSSVIK*VIIISKIQSN*VLI*KDYLWLEV
SCTETLRQNVSGQRESEKRSKRTLIHL*FTVGK
PSSKETLVNCSDPDELLN*DHCRLCLQMLNGKVI
YA*TFSSWIWQICIIILKWF*H

Frame 1

LRSSKPAPLFVCLLCP*FHCSKPTHQGL*TCPP
RAHQDLPAGYPRFGPTLHLQTTLA*CLILSNRL
TQSMG*V*PLRVWTCCTPPWATRPPPGNSAGRGR
RSLGRS*MCWKHCLPRPGTQTSSCERRWH*KST
CPSRGCRYGLRIEELSAANNSNNSRMEVKTK*D
LPKRRHLQLGK*VQRVEQVANSLPPLAPQSRPLP
AAVLLCLSGAQLPSPHCQIPCPPPLPACRGPIP
*PILRLQVIVKDMLAQLPTLGAWTVDHI*PLCI
TSFPDQGPHSVPWVPMQSPAISISPQLLFPPRDM
ELQAWVLTQPLIAWIIRTKLPPGSLTSMLTAWI
IKIRHPRGNSRFCEDL*NLFLWVIFKYTGLDIP
VLARHWLKELDGMMLRLI*SKFREA*KEKRRALE
GPTNQQHEMDKPICLRSCHSFRSLVILICKVIK
SILAMCNQTPPKIKSNKTKL*RKGGKVIAFLSR
GVPLF*PILG*ILGMNSVSSSFTFHDQLVVGTEK
TFQGCVNCVTDCPRCTTLFKK*CS*GVNM*FKR
QSVCVL*MVHLWFLICARLQNCDLLLLYATLNS
TSAGVLL*LNRL*L*AKFRATEY*SKKITFGWR*
AALKLYDKMSLDKESQRREAKGH*FICNLLLVS
LAVKRHWSIALTLMNY*TEIIVVYACRC*MEKL
YMHKPFLPGFGRYV*LY*NGSST

Frame 2

SEAVNQPLCLFVCFALSSTAPNPPTKDSEPVHP
GRIKIFQLGTPDLGRLCTSKQP*HDVLS*ATAL
RSQWAESDHFGYGLAAPLRGLPGHPPETAPGED
DVHSGAARCAGSTVCQDPVPRHLHARGGGTENQL
ARVEGAGMV*ESKS*VPPTTATTAEWRSKQSET
CQKEDISSSGSEFREWNKWPIHSPL*HLSPDHC
QQQCSCVYLEPSFHLPTVRSLVHLLFLHAEVLSH
DLYSGFRL*SRICWLNFLLWGHGLWIIFDPYAS
PASRTRGHTQSHGYQCSHQPSQSVPSFSFHPGI
WSFKLGF*LNH*LLGL*GPNCLLEA*LQC*LLGL
*RSDILVEIPGFVKTCRTSFCG*FLNILGWTFQ
F*PGIG*KS*MG*CSDSSDQSSERHRRKNEGP*
RGLQTSNMKWTNQSA*DPVIVLDHWLS*FAK*SK
AF*PCATKHHQK*NQTKLSCEGREGRS*PS*AE
VFHCFSQSLVES*E*TVSQAHSRFMTNW*LALK
KLFRAV*IV*LIVLDALLYLKNNVHKESICSLRD
NQCVSYKWYICGF*SVLDFKTVISCYCMQP*TP
PLQGFFCD*IGYNYKQNSEQLSTDLKRLPLAGG
ELH*NFTTKCLWTKRVREEKQKDTNSSVIYCW*A
*Q*RDIGQLL*P**IIKLRSLSFMLADVKWKSY
ICINLFFLDLADMYNYIKMVLAQ

Sequence NM_021728

GAGAGCGGGACCGGCCTCAGCTCCAACACAGCCTCCACTGTGATTAAAAATAAAAATTGCTAGAGCAGCCCTCACTCGCCACATCTACTTTGATAGCTGG
CTATTTGGAATTTAAAGGATATTTGACTTTTTCTAACCTCCCATGAGGCTGTAAGTTCCACTGCTCCAAACCCACCCACCAAGGACTCTGAACCTGTCCA
CCCCGGGCGCATCAAGATCTTCCAGCTGGGTACCCCCGATTTGGGCCGACTTTGCACCTCCAAACAACCTTAGCATGATGTCTTATCTTAAGCAACCGCC
TTACGCAGTCAATGGGCTGAGTCTGACCACTTCGGGTATGGACTTGCTGCACCCCTCCGTGGGCTACCCGGGGCCCTGGGCTTCTTGTCCCGCAGCCACC
CCCCGGAAACAGCGCCGGGAGAGGACGACGTTCACTCGGGCGCAGCTAGATGTGCTGGAAGCACTGTTTGCCAAGACCCGGTACCCAGACATCTTCATGC
GAGAGGAGGTGGCACTGAAAATCAACTTGCCCGAGTCGAGGGTGCAGGTATGGTTTAAGAATCGAAGAGCTAAGTGCCGCCAACAACAGCAACAACAGCA
GAATGGAGGTCAAAACAAAGTGAGACCTGCCAAAAAGAAGACATCTCCAGCTCGGGAAGTGAGTTCAGAGAGTGGAACAAGTGGCCAATTCACTCCCCCC
TCTAGCACCTCAGTCCCGACCATTGCCAGCAGCAGTGCTCCTGTGTCTATCTGGAGCCCAGCTTCCATCTCCCCACTGTCAGATCCCTTGTCCACCTCCT
CTTCCTGCATGCAGAGGTCCTATCCCATGACCTATACTCAGGCTTCAGGTTATAGTCAAGGATATGCTGGCTCAACTTCCTACTTTGGGGGCATGGACTG
TGGATCATATTTGACCCCTATGCATCACCAGCTTCCCGGACCAGGGGCCACACTCAGTCCCATGGGTACCAATGCAGTCACCAGCCATCTCAATCAGTCC
CCAGCTTCTCTTTCCACCCAGGGATATGGAGCTTCAAGCTTGGGTTTTAACTCAACCACTGATTGCTTGGATTATAAGGACCAAACTGCCTCCTGGAAGC
TTAACTTCAATGCTGACTGCTTGGATTATAAAGATCAGACATCCTCGTGGAAATTCCAGGTTTTGTGAAGACCTGTAGAACCTCTTTTTGTGGGTGATTT
TTAAATATACTGGGCTGGACATTCCAGTTTTAGCCAGGCATTGGTTAAAAGAGTTAGATGGGATGATGCTCAGACTCATCTGATCAAAGTTCCGAGAGGC
ATAGAAGGAAAAACGAAGGGCCTTAGAGGGGCCTACAAACCAGCAACATGAAATGGACAAACCAATCTGCTTAAGATCCTGTCATAGTTTTAGATCATTG
GTTATCCTGATTTGCAAAGTGATCAAAAGCATTCTAGCCATGTGCAACCAAACACCACCAAAAATAAAATCAAACAAAACTAAGTTGTGAAGGAAGGGAG
GGAAGGTCATAGCCTTCTTAAGCAGAGGTGTTCCATTGTTTTAGCCAATCCTTGGTTGAATCTTAGGAATGAACAGTGTCTCAAGCTCATTCACGTTTCA
TGACCAACTGGTAGTTGGCACTGAAAAAACTTTTCAGGGCTGTGTGAATTGTGTGACTGATTGTCCTAGATGCACTACTTTATTTAAAAAATAATGTTCA
TAAGGAGTCAATATGTAGTTTAAGAGACAATCAGTGTGTGTCTTATAAATGGTACATCTGTGGTTTTTAATCTGTGCTAGACTTCAAAACTGTGATCTCC
TGTTATTGTATGCAACCTTGAACTCCACCTCTGCAGGGGTTCTTCTGTGATTAAATAGGTTATAATTATAAGCAAAATTCAGAGCAACTGAGTACTGATC
TAAAAAGATTACCTTTGGCTGGAGGTGAGCTGCACTGAAACTTTACGACAAAATGTCTCTGGACAAAGAGAGTCAGAGAAGAGAAGCAAAAGGACACTAA
TTCATCTGTAATTTACTGTTGGTAAGCCTAGCAGTAAAGAGACATTGGTCAATTGCTCTGACCCTGATGAATTATTAAACTGAGATCATTGTCGTTTATG
CTTGCAGATGTTAAATGGAAAAGTTATATATGCATAAACCTTTTCTTCCTGGATTTGGCAGATATGTATAATTATATTAAAATGGTTCTAGCACAA
  • refseq_OTX2.F1 (forward primer)
  • refseq_OTX2.R1 (reverse primer)
  • Alternative acceptor

Frame 0

ESGTGLSSNTASTVIKNKNC*SSPHSPHLL**L
AIWNLKDI*LFLTSHEAVSSTAPNPPTKDSEPVH
PGRIKIFQLGTPDLGRLCTSKQP*HDVLS*ATA
LRSQWAESDHFGYGLAAPLRGLPGALGFLSRSH
PPETAPGEDDVHSGAARCAGSTVCQDPVPRHLHA
RGGGTENQLARVEGAGMV*ESKS*VPPTTATTA
EWRSKQSETCQKEDISSSGSEFREWNKWPIHSP
L*HLSPDHCQQQCSCVYLEPSFHLPTVRSLVHLL
FLHAEVLSHDLYSGFRL*SRICWLNFLLWGHGL
WIIFDPYASPASRTRGHTQSHGYQCSHQPSQSV
PSFSFHPGIWSFKLGF*LNH*LLGL*GPNCLLEA
*LQC*LLGL*RSDILVEIPGFVKTCRTSFCG*F
LNILGWTFQF*PGIG*KS*MG*CSDSSDQSSER
HRRKNEGP*RGLQTSNMKWTNQSA*DPVIVLDHW
LS*FAK*SKAF*PCATKHHQK*NQTKLSCEGRE
GRS*PS*AEVFHCFSQSLVES*E*TVSQAHSRF
MTNW*LALKKLFRAV*IV*LIVLDALLYLKNNVH
KESICSLRDNQCVSYKWYICGF*SVLDFKTVIS
CYCMQP*TPPLQGFFCD*IGYNYKQNSEQLSTD
LKRLPLAGGELH*NFTTKCLWTKRVREEKQKDTN
SSVIYCW*A*Q*RDIGQLL*P**IIKLRSLSFM
LADVKWKSYICINLFFLDLADMYNYIKMVLAQ

Frame 1

RAGPASAPTQPPL*LKIKIARAALTRHIYFDSW
LFGI*RIFDFF*PPMRL*VPLLQTHPPRTLNLS
TPGASRSSSWVPPIWADFAPPNNLSMMSYLKQPP
YAVNGLSLTTSGMDLLHPSVGYPGPWASCPAAT
PRKQRRERTTFTRAQLDVLEALFAKTRYPDIFM
REEVALKINLPESRVQVWFKNRRAKCRQQQQQQQ
NGGQNKVRPAKKKTSPAREVSSESGTSGQFTPP
SSTSVPTIASSSAPVSIWSPASISPLSDPLSTS
SSCMQRSYPMTYTQASGYSQGYAGSTSYFGGMDC
GSYLTPMHHQLPGPGATLSPMGTNAVTSHLNQS
PASLSTQGYGASSLGFNSTTDCLDYKDQTASWK
LNFNADCLDYKDQTSSWKFQVL*RPVEPLFVGDF
*IYWAGHSSFSQALVKRVRWDDAQTHLIKVPRG
IEGKTKGLRGAYKPAT*NGQTNLLKILS*F*II
GYPDLQSDQKHSSHVQPNTTKNKIKQN*VVKEGR
EGHSLLKQRCSIVLANPWLNLRNEQCLKLIHVS
*PTGSWH*KNFSGLCELCD*LS*MHYFI*KIMF
IRSQYVV*ETISVCLINGTSVVFNLC*TSKL*SP
VIVCNLELHLCRGSSVIK*VIIISKIQSN*VLI
*KDYLWLEVSCTETLRQNVSGQRESEKRSKRTL
IHL*FTVGKPSSKETLVNCSDPDELLN*DHCRLC
LQMLNGKVIYA*TFSSWIWQICIIILKWF*H

Frame 2

ERDRPQLQHSLHCD*K*KLLEQPSLATSTLIAG
YLEFKGYLTFSNLP*GCKFHCSKPTHQGL*TCP
PRAHQDLPAGYPRFGPTLHLQTTLA*CLILSNR
LTQSMG*V*PLRVWTCCTPPWATRGPGLLVPQPP
PGNSAGRGRRSLGRS*MCWKHCLPRPGTQTSSC
ERRWH*KSTCPSRGCRYGLRIEELSAANNSNNS
RMEVKTK*DLPKRRHLQLGK*VQRVEQVANSLPP
LAPQSRPLPAAVLLCLSGAQLPSPHCQIPCPPP
LPACRGPIP*PILRLQVIVKDMLAQLPTLGAWT
VDHI*PLCITSFPDQGPHSVPWVPMQSPAISISP
QLLFPPRDMELQAWVLTQPLIAWIIRTKLPPGS
LTSMLTAWIIKIRHPRGNSRFCEDL*NLFLWVI
FKYTGLDIPVLARHWLKELDGMMLRLI*SKFREA
*KEKRRALEGPTNQQHEMDKPICLRSCHSFRSL
VILICKVIKSILAMCNQTPPKIKSNKTKL*RKG
GKVIAFLSRGVPLF*PILG*ILGMNSVSSSFTFH
DQLVVGTEKTFQGCVNCVTDCPRCTTLFKK*CS
*GVNM*FKRQSVCVL*MVHLWFLICARLQNCDL
LLLYATLNSTSAGVLL*LNRL*L*AKFRATEY*S
KKITFGWR*AALKLYDKMSLDKESQRREAKGH*
FICNLLLVSLAVKRHWSIALTLMNY*TEIIVVY
ACRC*MEKLYMHKPFLPGFGRYV*LY*NGSST

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