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Supplementary data
Tumor microenvironment associated modifications of alternative splicing
Splicing factor knockdown
Impact on ASEs
CCDC49 LUC7L3 DDX42 XAB2 HSPA2 LUC7L RBM15 RBM4B RBM5 RBMS3 RPS13 SART1 SMNDC1 SSBP3 TRAP1
QPCR Primer Pair List
: primer pair list
| Gene | Forward | Reverse | |
|---|---|---|---|
| VIEW | CAST | CAST_cass_L_2_f | CAST_cass_L_4_r |
| VIEW | CAST | CAST_cass_S_3_f | CAST_cass_S_3_r |
| VIEW | CD46 | CD46_cass_L_f | CD46_cass_L_r |
| VIEW | CD46 | CD46_cass_S_f | CD46_cass_S_r |
| VIEW | CD47 | CD47_cass_L_f | CD47_cass_L_r |
| VIEW | CD47 | CD47_cass_S_f | CD47_cass_S_r |
| VIEW | CD68 | CD68_alt3_L_f | CD68_alt3_S_r |
| VIEW | CD68 | CD68_alt3_S_f | CD68_alt3_S_r |
| VIEW | EIF4G2 | EIF4G2_cass_L_f | EIF4G2_cass_L_r |
| VIEW | EIF4G2 | EIF4G2_cass_S_f | EIF4G2_cass_S_r |
| VIEW | GMEB1/GMEB1 | GMEB1_alt3_L_f | GMEB1_alt3_L_r |
| VIEW | GMEB1/GMEB1 | GMEB1_alt3_S_f | GMEB1_alt3_S_r |
| VIEW | GMPR2 | GMPR2_alt5_L_f | GMPR2_alt5_L_r |
| VIEW | GMPR2 | GMPR2_alt5_S_f | GMPR2_alt5_S_r |
| VIEW | HMGN3 | HMGN3_alt5_L_f | HMGN3_alt5_L_r |
| VIEW | HMGN3 | HMGN3_alt5_S_f | HMGN3_alt5_S_r |
| VIEW | IRF2BP2 | IRF2BP2_alt5_L_f | IRF2BP2_alt5_L_r |
| VIEW | IRF2BP2 | IRF2BP2_alt5_S_f | IRF2BP2_alt5_S_r |
| VIEW | KIAA1217 | KIAA1217_cass_L_f | KIAA1217_cass_L_r |
| VIEW | KIAA1217 | KIAA1217_cass_S_f | KIAA1217_cass_S_r |
QPCR Primer Pair List
: event list
| Short | Long | |
|---|---|---|
| VIEW | CAST_cass_S_3_f CAST_cass_S_3_r | CAST_cass_L_2_f CAST_cass_L_4_r |
| VIEW | CD46_cass_S_f CD46_cass_S_r | CD46_cass_L_f CD46_cass_L_r |
| VIEW | CD47_cass_S_f CD47_cass_S_r | CD47_cass_L_f CD47_cass_L_r |
| VIEW | CD68_alt3_S_f CD68_alt3_S_r | CD68_alt3_L_f CD68_alt3_S_r |
| VIEW | EIF4G2_cass_S_f EIF4G2_cass_S_r | EIF4G2_cass_L_f EIF4G2_cass_L_r |
| VIEW | GMEB1_alt3_S_f GMEB1_alt3_S_r | GMEB1_alt3_L_f GMEB1_alt3_L_r |
| VIEW | GMPR2_alt5_S_f GMPR2_alt5_S_r | GMPR2_alt5_L_f GMPR2_alt5_L_r |
| VIEW | HMGN3_alt5_S_f HMGN3_alt5_S_r | HMGN3_alt5_L_f HMGN3_alt5_L_r |
| VIEW | IRF2BP2_alt5_S_f IRF2BP2_alt5_S_r | IRF2BP2_alt5_L_f IRF2BP2_alt5_L_r |
| VIEW | KIAA1217_cass_S_f KIAA1217_cass_S_r | KIAA1217_cass_L_f KIAA1217_cass_L_r |
| VIEW | M-RIP_cass_S_f M-RIP_cass_S_r | M-RIP_cass_L_f M-RIP_cass_L_1_r |
| VIEW | MARCH8_cass_S_f MARCH8_cass_S_r | MARCH8_cass_L_f MARCH8_cass_L_1_r |
| VIEW | MSRB3_cass_S_f MSRB3_cass_S_r | MSRB3_cass_L_f MSRB3_cass_L_r |
| VIEW | MYO18A_cass_S_f MYO18A_cass_S_r | MYO18A_cass_S_1_f MYO18A_cass_L_1_r |
| VIEW | NDRG2_cass_S_f NDRG2_cass_S_2_r | NDRG2_cass_L_1_f NDRG2_cass_S_2_r |
| VIEW | NFAT5_cass_S_f NFAT5_cass_S_r | NFAT5_cass_L_f NFAT5_cass_L_r |
| VIEW | NUP62_alt3_S_f NUP62_alt3_S_r | NUP62_alt3_L_f NUP62_alt3_S_r |
| VIEW | OSBPL9_cass_S_5_f OSBPL9_cass_S_4_r | OSBPL9_cass_L_4_f OSBPL9_cass_S_4_r |
| VIEW | PB1_cass_S_f PB1_cass_S_r | PB1_cass_L_f PB1_cass_L_r |
| VIEW | RNASEN_cass_S_2_f RNASEN_cass_S_1_r | RNASEN_cass_L_1_f RNASEN_cass_L_3_r |
QPCR QPSI
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