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Home Supplementary data Tumor microenvironment associated modifications of alternative splicing RBFOX2 and QKI dependent ASEs QKI responsiveness of 48 RBFOX2 dependent ASEs permalink
QKI responsiveness of 48 RBFOX2 dependent ASEs ⚙
Transcript map : APP JPB_SKOV_Ctrl Lipo_72h
Exon
Length: 251
Transcript: APP.aAug05
Exon
Length: 168
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Exon
Length: 130
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Exon
Length: 113
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Exon
Length: 194
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Exon
Length: 203
Transcript: APP.aAug05
Exon
Length: 168
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Exon
Length: 57
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Exon
Length: 134
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Exon
Length: 75
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Exon
Length: 159
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Exon
Length: 129
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Exon
Length: 100
Transcript: APP.aAug05
Exon
Length: 222
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Exon
Length: 54
Transcript: APP.aAug05
Exon
Length: 101
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Exon
Length: 147
Transcript: APP.aAug05
Exon
Length: 1221
Transcript: APP.aAug05
Intron
Length: 58418
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Intron
Length: 21907
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Intron
Length: 36594
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Intron
Length: 2042
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Intron
Length: 28957
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Intron
Length: 21658
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Intron
Length: 2598
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Intron
Length: 14884
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Intron
Length: 6315
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Intron
Length: 725
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Intron
Length: 19313
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Intron
Length: 937
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Intron
Length: 42629
Transcript: APP.aAug05
Intron
Length: 6663
Transcript: APP.aAug05
Intron
Length: 7350
Transcript: APP.aAug05
Intron
Length: 5704
Transcript: APP.aAug05
Intron
Length: 9951
Transcript: APP.aAug05
Reaction
Expected peak: 343
22.5M
APP.F9
APP.R1
Reaction
Expected peak: 343
22.5M
APP.F9
APP.R1
Reaction
Expected peak: 343
22.5M
APP.F9
APP.R1
Reaction
Expected peak: 343
22.5M
APP.F9
APP.R1
Exon
Length: 257
Transcript: APP.bAug05
Exon
Length: 168
Transcript: APP.bAug05
Exon
Length: 130
Transcript: APP.bAug05
Exon
Length: 113
Transcript: APP.bAug05
Exon
Length: 194
Transcript: APP.bAug05
Exon
Length: 203
Transcript: APP.bAug05
Exon
Length: 168
Transcript: APP.bAug05
Exon
Length: 134
Transcript: APP.bAug05
Exon
Length: 75
Transcript: APP.bAug05
Exon
Length: 159
Transcript: APP.bAug05
Exon
Length: 129
Transcript: APP.bAug05
Exon
Length: 100
Transcript: APP.bAug05
Exon
Length: 222
Transcript: APP.bAug05
Exon
Length: 54
Transcript: APP.bAug05
Exon
Length: 101
Transcript: APP.bAug05
Exon
Length: 147
Transcript: APP.bAug05
Exon
Length: 1226
Transcript: APP.bAug05
Intron
Length: 58418
Transcript: APP.bAug05
Intron
Length: 21907
Transcript: APP.bAug05
Intron
Length: 36594
Transcript: APP.bAug05
Intron
Length: 2042
Transcript: APP.bAug05
Intron
Length: 28957
Transcript: APP.bAug05
Intron
Length: 21658
Transcript: APP.bAug05
Intron
Length: 17539
Transcript: APP.bAug05
Intron
Length: 6315
Transcript: APP.bAug05
Intron
Length: 725
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Intron
Length: 19313
Transcript: APP.bAug05
Intron
Length: 937
Transcript: APP.bAug05
Intron
Length: 42629
Transcript: APP.bAug05
Intron
Length: 6663
Transcript: APP.bAug05
Intron
Length: 7350
Transcript: APP.bAug05
Intron
Length: 5704
Transcript: APP.bAug05
Intron
Length: 9951
Transcript: APP.bAug05
Reaction
Expected peak: 286
21.2M
APP.F9
APP.R1
Reaction
Expected peak: 286
21.2M
APP.F9
APP.R1
Reaction
Expected peak: 286
21.2M
APP.F9
APP.R1
Reaction
Expected peak: 286
21.2M
APP.F9
APP.R1
Exon
Length: 251
Transcript: APP.cAug05
Exon
Length: 168
Transcript: APP.cAug05
Exon
Length: 130
Transcript: APP.cAug05
Exon
Length: 113
Transcript: APP.cAug05
Exon
Length: 194
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Exon
Length: 203
Transcript: APP.cAug05
Exon
Length: 134
Transcript: APP.cAug05
Exon
Length: 75
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Exon
Length: 159
Transcript: APP.cAug05
Exon
Length: 129
Transcript: APP.cAug05
Exon
Length: 100
Transcript: APP.cAug05
Exon
Length: 222
Transcript: APP.cAug05
Exon
Length: 54
Transcript: APP.cAug05
Exon
Length: 101
Transcript: APP.cAug05
Exon
Length: 147
Transcript: APP.cAug05
Exon
Length: 1221
Transcript: APP.cAug05
Intron
Length: 58418
Transcript: APP.cAug05
Intron
Length: 21907
Transcript: APP.cAug05
Intron
Length: 36594
Transcript: APP.cAug05
Intron
Length: 2042
Transcript: APP.cAug05
Intron
Length: 28957
Transcript: APP.cAug05
Intron
Length: 39365
Transcript: APP.cAug05
Intron
Length: 6315
Transcript: APP.cAug05
Intron
Length: 725
Transcript: APP.cAug05
Intron
Length: 19313
Transcript: APP.cAug05
Intron
Length: 937
Transcript: APP.cAug05
Intron
Length: 42629
Transcript: APP.cAug05
Intron
Length: 6663
Transcript: APP.cAug05
Intron
Length: 7350
Transcript: APP.cAug05
Intron
Length: 5704
Transcript: APP.cAug05
Intron
Length: 9951
Transcript: APP.cAug05
Reaction
Expected peak: 118
13.1M
APP.F9
APP.R1
Reaction
Expected peak: 118
13.1M
APP.F9
APP.R1
Reaction
Expected peak: 118
13.1M
APP.F9
APP.R1
Reaction
Expected peak: 118
13.1M
APP.F9
APP.R1
Exon
Length: 207
Transcript: APP.dAug05
Exon
Length: 130
Transcript: APP.dAug05
Exon
Length: 113
Transcript: APP.dAug05
Exon
Length: 194
Transcript: APP.dAug05
Exon
Length: 203
Transcript: APP.dAug05
Exon
Length: 134
Transcript: APP.dAug05
Exon
Length: 75
Transcript: APP.dAug05
Exon
Length: 159
Transcript: APP.dAug05
Exon
Length: 129
Transcript: APP.dAug05
Exon
Length: 100
Transcript: APP.dAug05
Exon
Length: 222
Transcript: APP.dAug05
Exon
Length: 54
Transcript: APP.dAug05
Exon
Length: 101
Transcript: APP.dAug05
Exon
Length: 147
Transcript: APP.dAug05
Exon
Length: 966
Transcript: APP.dAug05
Intron
Length: 80493
Transcript: APP.dAug05
Intron
Length: 36594
Transcript: APP.dAug05
Intron
Length: 2042
Transcript: APP.dAug05
Intron
Length: 28957
Transcript: APP.dAug05
Intron
Length: 39365
Transcript: APP.dAug05
Intron
Length: 6315
Transcript: APP.dAug05
Intron
Length: 725
Transcript: APP.dAug05
Intron
Length: 19313
Transcript: APP.dAug05
Intron
Length: 937
Transcript: APP.dAug05
Intron
Length: 42629
Transcript: APP.dAug05
Intron
Length: 6663
Transcript: APP.dAug05
Intron
Length: 7350
Transcript: APP.dAug05
Intron
Length: 5704
Transcript: APP.dAug05
Intron
Length: 9951
Transcript: APP.dAug05
Reaction
Expected peak: 118
13.1M
APP.F9
APP.R1
Reaction
Expected peak: 118
13.1M
APP.F9
APP.R1
Reaction
Expected peak: 118
13.1M
APP.F9
APP.R1
Reaction
Expected peak: 118
13.1M
APP.F9
APP.R1
Exon
Length: 33
Transcript: APP.eAug05
Exon
Length: 203
Transcript: APP.eAug05
Exon
Length: 57
Transcript: APP.eAug05
Exon
Length: 134
Transcript: APP.eAug05
Exon
Length: 75
Transcript: APP.eAug05
Exon
Length: 159
Transcript: APP.eAug05
Exon
Length: 129
Transcript: APP.eAug05
Exon
Length: 100
Transcript: APP.eAug05
Exon
Length: 222
Transcript: APP.eAug05
Exon
Length: 101
Transcript: APP.eAug05
Exon
Length: 147
Transcript: APP.eAug05
Exon
Length: 136
Transcript: APP.eAug05
Exon
Length: 184
Transcript: APP.eAug05
Intron
Length: 28957
Transcript: APP.eAug05
Intron
Length: 24424
Transcript: APP.eAug05
Intron
Length: 14884
Transcript: APP.eAug05
Intron
Length: 6315
Transcript: APP.eAug05
Intron
Length: 725
Transcript: APP.eAug05
Intron
Length: 19313
Transcript: APP.eAug05
Intron
Length: 937
Transcript: APP.eAug05
Intron
Length: 42629
Transcript: APP.eAug05
Intron
Length: 14067
Transcript: APP.eAug05
Intron
Length: 5704
Transcript: APP.eAug05
Intron
Length: 9951
Transcript: APP.eAug05
Intron
Length: 54
Transcript: APP.eAug05
Reaction
Expected peak: 175
0M
APP.F9
APP.R1
Reaction
Expected peak: 175
0M
APP.F9
APP.R1
Reaction
Expected peak: 175
0M
APP.F9
APP.R1
Reaction
Expected peak: 175
0M
APP.F9
APP.R1
Exon
Length: 118
Transcript: APP.fAug05
Exon
Length: 113
Transcript: APP.fAug05
Exon
Length: 194
Transcript: APP.fAug05
Exon
Length: 203
Transcript: APP.fAug05
Exon
Length: 168
Transcript: APP.fAug05
Exon
Length: 134
Transcript: APP.fAug05
Exon
Length: 75
Transcript: APP.fAug05
Exon
Length: 159
Transcript: APP.fAug05
Exon
Length: 129
Transcript: APP.fAug05
Exon
Length: 100
Transcript: APP.fAug05
Exon
Length: 544
Transcript: APP.fAug05
Intron
Length: 36594
Transcript: APP.fAug05
Intron
Length: 2042
Transcript: APP.fAug05
Intron
Length: 28957
Transcript: APP.fAug05
Intron
Length: 21658
Transcript: APP.fAug05
Intron
Length: 17539
Transcript: APP.fAug05
Intron
Length: 6315
Transcript: APP.fAug05
Intron
Length: 725
Transcript: APP.fAug05
Intron
Length: 19313
Transcript: APP.fAug05
Intron
Length: 937
Transcript: APP.fAug05
Intron
Length: 8613
Transcript: APP.fAug05
Reaction
Expected peak: 286
21.2M
APP.F9
APP.R1
Reaction
Expected peak: 286
21.2M
APP.F9
APP.R1
Reaction
Expected peak: 286
21.2M
APP.F9
APP.R1
Reaction
Expected peak: 286
21.2M
APP.F9
APP.R1
Exon
Length: 183
Transcript: APP.gAug05
Exon
Length: 168
Transcript: APP.gAug05
Exon
Length: 130
Transcript: APP.gAug05
Exon
Length: 113
Transcript: APP.gAug05
Exon
Length: 194
Transcript: APP.gAug05
Exon
Length: 203
Transcript: APP.gAug05
Exon
Length: 305
Transcript: APP.gAug05
Intron
Length: 58418
Transcript: APP.gAug05
Intron
Length: 21907
Transcript: APP.gAug05
Intron
Length: 36594
Transcript: APP.gAug05
Intron
Length: 2042
Transcript: APP.gAug05
Intron
Length: 28957
Transcript: APP.gAug05
Intron
Length: 11927
Transcript: APP.gAug05
Exon
Length: 105
Transcript: APP.hAug05
Exon
Length: 129
Transcript: APP.hAug05
Exon
Length: 100
Transcript: APP.hAug05
Exon
Length: 222
Transcript: APP.hAug05
Exon
Length: 54
Transcript: APP.hAug05
Exon
Length: 101
Transcript: APP.hAug05
Exon
Length: 147
Transcript: APP.hAug05
Exon
Length: 136
Transcript: APP.hAug05
Exon
Length: 27
Transcript: APP.hAug05
Intron
Length: 14637
Transcript: APP.hAug05
Intron
Length: 937
Transcript: APP.hAug05
Intron
Length: 42629
Transcript: APP.hAug05
Intron
Length: 6663
Transcript: APP.hAug05
Intron
Length: 7350
Transcript: APP.hAug05
Intron
Length: 5704
Transcript: APP.hAug05
Intron
Length: 9951
Transcript: APP.hAug05
Intron
Length: 54
Transcript: APP.hAug05
Exon
Length: 203
Transcript: APP.iAug05
Exon
Length: 168
Transcript: APP.iAug05
Exon
Length: 229
Transcript: APP.iAug05
Intron
Length: 21658
Transcript: APP.iAug05
Intron
Length: 2598
Transcript: APP.iAug05
Exon
Length: 112
Transcript: APP.jAug05
Exon
Length: 57
Transcript: APP.jAug05
Exon
Length: 134
Transcript: APP.jAug05
Exon
Length: 75
Transcript: APP.jAug05
Exon
Length: 10
Transcript: APP.jAug05
Intron
Length: 2598
Transcript: APP.jAug05
Intron
Length: 14884
Transcript: APP.jAug05
Intron
Length: 6315
Transcript: APP.jAug05
Intron
Length: 5234
Transcript: APP.jAug05
Exon
Length: 222
Transcript: APP.kAug05
Exon
Length: 168
Transcript: APP.kAug05
Exon
Length: 548
Transcript: APP.kAug05
Intron
Length: 57072
Transcript: APP.kAug05
Intron
Length: 21907
Transcript: APP.kAug05
Exon
Length: 406
Transcript: APP.lAug05
Exon
Length: 147
Transcript: APP.lAug05
Exon
Length: 235
Transcript: APP.lAug05
Intron
Length: 5704
Transcript: APP.lAug05
Intron
Length: 9951
Transcript: APP.lAug05
Exon
Length: 57
Transcript: APP.mAug05
Exon
Length: 183
Transcript: APP.mAug05
Exon
Length: 180
Transcript: APP.mAug05
Intron
Length: 2042
Transcript: APP.mAug05
Intron
Length: 170285
Transcript: APP.mAug05
Exon
Length: 129
Transcript: APP.nAug05
Exon
Length: 117
Transcript: APP.nAug05
Exon
Length: 277
Transcript: APP.nAug05
Intron
Length: 34440
Transcript: APP.nAug05
Intron
Length: 13025
Transcript: APP.nAug05
Exon
Length: 217
Transcript: APP.shed1.aAug05
Exon
Length: 389
Transcript: APP.shed2.aAug05
APP.F9
ACCACCACCACCACAGAGTC
APP.R1
GGGCATGTTCATTCTCATCC

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