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Supplementary data
Tumor microenvironment associated modifications of alternative splicing
RBFOX2 and QKI dependent ASEs
QKI responsiveness of 48 RBFOX2 dependent ASEs
Transcript map
: CA12 JPB_SKOV_Ctrl Lipo_72h
Exon
Length: 241
Transcript: NM_001218
Length: 241
Transcript: NM_001218
Exon
Length: 21
Transcript: NM_001218
Length: 21
Transcript: NM_001218
Exon
Length: 180
Transcript: NM_001218
Length: 180
Transcript: NM_001218
Exon
Length: 143
Transcript: NM_001218
Length: 143
Transcript: NM_001218
Exon
Length: 96
Transcript: NM_001218
Length: 96
Transcript: NM_001218
Exon
Length: 64
Transcript: NM_001218
Length: 64
Transcript: NM_001218
Exon
Length: 158
Transcript: NM_001218
Length: 158
Transcript: NM_001218
Exon
Length: 127
Transcript: NM_001218
Length: 127
Transcript: NM_001218
Exon
Length: 33
Transcript: NM_001218
Length: 33
Transcript: NM_001218
Exon
Length: 85
Transcript: NM_001218
Length: 85
Transcript: NM_001218
Exon
Length: 2827
Transcript: NM_001218
Length: 2827
Transcript: NM_001218
Intron
Length: 5957
Transcript: NM_001218
Length: 5957
Transcript: NM_001218
Intron
Length: 28948
Transcript: NM_001218
Length: 28948
Transcript: NM_001218
Intron
Length: 910
Transcript: NM_001218
Length: 910
Transcript: NM_001218
Intron
Length: 3379
Transcript: NM_001218
Length: 3379
Transcript: NM_001218
Intron
Length: 1218
Transcript: NM_001218
Length: 1218
Transcript: NM_001218
Intron
Length: 274
Transcript: NM_001218
Length: 274
Transcript: NM_001218
Intron
Length: 1342
Transcript: NM_001218
Length: 1342
Transcript: NM_001218
Intron
Length: 10688
Transcript: NM_001218
Length: 10688
Transcript: NM_001218
Intron
Length: 864
Transcript: NM_001218
Length: 864
Transcript: NM_001218
Intron
Length: 791
Transcript: NM_001218
Length: 791
Transcript: NM_001218
Reaction
Expected peak: 176
116.9M
refseq_CA12.F2
refseq_CA12.R2
Expected peak: 176
116.9M
refseq_CA12.F2
refseq_CA12.R2
Exon
Length: 241
Transcript: NM_206925
Length: 241
Transcript: NM_206925
Exon
Length: 21
Transcript: NM_206925
Length: 21
Transcript: NM_206925
Exon
Length: 180
Transcript: NM_206925
Length: 180
Transcript: NM_206925
Exon
Length: 143
Transcript: NM_206925
Length: 143
Transcript: NM_206925
Exon
Length: 96
Transcript: NM_206925
Length: 96
Transcript: NM_206925
Exon
Length: 64
Transcript: NM_206925
Length: 64
Transcript: NM_206925
Exon
Length: 158
Transcript: NM_206925
Length: 158
Transcript: NM_206925
Exon
Length: 127
Transcript: NM_206925
Length: 127
Transcript: NM_206925
Exon
Length: 85
Transcript: NM_206925
Length: 85
Transcript: NM_206925
Exon
Length: 2827
Transcript: NM_206925
Length: 2827
Transcript: NM_206925
Intron
Length: 5957
Transcript: NM_206925
Length: 5957
Transcript: NM_206925
Intron
Length: 28948
Transcript: NM_206925
Length: 28948
Transcript: NM_206925
Intron
Length: 910
Transcript: NM_206925
Length: 910
Transcript: NM_206925
Intron
Length: 3379
Transcript: NM_206925
Length: 3379
Transcript: NM_206925
Intron
Length: 1218
Transcript: NM_206925
Length: 1218
Transcript: NM_206925
Intron
Length: 274
Transcript: NM_206925
Length: 274
Transcript: NM_206925
Intron
Length: 1342
Transcript: NM_206925
Length: 1342
Transcript: NM_206925
Intron
Length: 11585
Transcript: NM_206925
Length: 11585
Transcript: NM_206925
Intron
Length: 791
Transcript: NM_206925
Length: 791
Transcript: NM_206925
Reaction
Expected peak: 143
6.1M
refseq_CA12.F2
refseq_CA12.R2
Expected peak: 143
6.1M
refseq_CA12.F2
refseq_CA12.R2
refseq_CA12.R2
AAAGCCAAATGGACACCACC
AAAGCCAAATGGACACCACC
refseq_CA12.F2
AGAAATGATCAACAACTTCCGG
AGAAATGATCAACAACTTCCGG