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Supplementary data
Tumor microenvironment associated modifications of alternative splicing
RBFOX2 and QKI dependent ASEs
QKI responsiveness of 48 RBFOX2 dependent ASEs
Transcript map
: FGFR1OP JPB_SKOV_Ctrl Lipo_72h
Exon
Length: 187
Transcript: NM_007045
Length: 187
Transcript: NM_007045
Exon
Length: 54
Transcript: NM_007045
Length: 54
Transcript: NM_007045
Exon
Length: 55
Transcript: NM_007045
Length: 55
Transcript: NM_007045
Exon
Length: 89
Transcript: NM_007045
Length: 89
Transcript: NM_007045
Exon
Length: 138
Transcript: NM_007045
Length: 138
Transcript: NM_007045
Exon
Length: 81
Transcript: NM_007045
Length: 81
Transcript: NM_007045
Exon
Length: 60
Transcript: NM_007045
Length: 60
Transcript: NM_007045
Exon
Length: 227
Transcript: NM_007045
Length: 227
Transcript: NM_007045
Exon
Length: 113
Transcript: NM_007045
Length: 113
Transcript: NM_007045
Exon
Length: 69
Transcript: NM_007045
Length: 69
Transcript: NM_007045
Exon
Length: 40
Transcript: NM_007045
Length: 40
Transcript: NM_007045
Exon
Length: 97
Transcript: NM_007045
Length: 97
Transcript: NM_007045
Exon
Length: 675
Transcript: NM_007045
Length: 675
Transcript: NM_007045
Intron
Length: 545
Transcript: NM_007045
Length: 545
Transcript: NM_007045
Intron
Length: 3079
Transcript: NM_007045
Length: 3079
Transcript: NM_007045
Intron
Length: 475
Transcript: NM_007045
Length: 475
Transcript: NM_007045
Intron
Length: 452
Transcript: NM_007045
Length: 452
Transcript: NM_007045
Intron
Length: 6411
Transcript: NM_007045
Length: 6411
Transcript: NM_007045
Intron
Length: 2614
Transcript: NM_007045
Length: 2614
Transcript: NM_007045
Intron
Length: 8841
Transcript: NM_007045
Length: 8841
Transcript: NM_007045
Intron
Length: 2146
Transcript: NM_007045
Length: 2146
Transcript: NM_007045
Intron
Length: 1652
Transcript: NM_007045
Length: 1652
Transcript: NM_007045
Intron
Length: 5987
Transcript: NM_007045
Length: 5987
Transcript: NM_007045
Intron
Length: 1232
Transcript: NM_007045
Length: 1232
Transcript: NM_007045
Intron
Length: 5932
Transcript: NM_007045
Length: 5932
Transcript: NM_007045
Reaction
Expected peak: 254
10.6M
refseq_FGFR1OP.F1
refseq_FGFR1OP.R1
Expected peak: 254
10.6M
refseq_FGFR1OP.F1
refseq_FGFR1OP.R1
Exon
Length: 187
Transcript: NM_194429
Length: 187
Transcript: NM_194429
Exon
Length: 54
Transcript: NM_194429
Length: 54
Transcript: NM_194429
Exon
Length: 55
Transcript: NM_194429
Length: 55
Transcript: NM_194429
Exon
Length: 89
Transcript: NM_194429
Length: 89
Transcript: NM_194429
Exon
Length: 138
Transcript: NM_194429
Length: 138
Transcript: NM_194429
Exon
Length: 81
Transcript: NM_194429
Length: 81
Transcript: NM_194429
Exon
Length: 227
Transcript: NM_194429
Length: 227
Transcript: NM_194429
Exon
Length: 113
Transcript: NM_194429
Length: 113
Transcript: NM_194429
Exon
Length: 69
Transcript: NM_194429
Length: 69
Transcript: NM_194429
Exon
Length: 40
Transcript: NM_194429
Length: 40
Transcript: NM_194429
Exon
Length: 97
Transcript: NM_194429
Length: 97
Transcript: NM_194429
Exon
Length: 675
Transcript: NM_194429
Length: 675
Transcript: NM_194429
Intron
Length: 545
Transcript: NM_194429
Length: 545
Transcript: NM_194429
Intron
Length: 3079
Transcript: NM_194429
Length: 3079
Transcript: NM_194429
Intron
Length: 475
Transcript: NM_194429
Length: 475
Transcript: NM_194429
Intron
Length: 452
Transcript: NM_194429
Length: 452
Transcript: NM_194429
Intron
Length: 6411
Transcript: NM_194429
Length: 6411
Transcript: NM_194429
Intron
Length: 11515
Transcript: NM_194429
Length: 11515
Transcript: NM_194429
Intron
Length: 2146
Transcript: NM_194429
Length: 2146
Transcript: NM_194429
Intron
Length: 1652
Transcript: NM_194429
Length: 1652
Transcript: NM_194429
Intron
Length: 5987
Transcript: NM_194429
Length: 5987
Transcript: NM_194429
Intron
Length: 1232
Transcript: NM_194429
Length: 1232
Transcript: NM_194429
Intron
Length: 5932
Transcript: NM_194429
Length: 5932
Transcript: NM_194429
Reaction
Expected peak: 194
64M
refseq_FGFR1OP.F1
refseq_FGFR1OP.R1
Expected peak: 194
64M
refseq_FGFR1OP.F1
refseq_FGFR1OP.R1
refseq_FGFR1OP.R1
GACACTTGTATCACTCTGATTGGC
GACACTTGTATCACTCTGATTGGC
refseq_FGFR1OP.F1
CTGTGGGTGGACCCTTATTATTAG
CTGTGGGTGGACCCTTATTATTAG