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Supplementary data
Tumor microenvironment associated modifications of alternative splicing
RBFOX2 and QKI dependent ASEs
QKI responsiveness of 48 RBFOX2 dependent ASEs
Transcript map
: GAB1 JPB_SKOV_Ctrl Lipo_72h
Exon
Length: 16
Transcript: NM_002039
Length: 16
Transcript: NM_002039
Exon
Length: 279
Transcript: NM_002039
Length: 279
Transcript: NM_002039
Exon
Length: 295
Transcript: NM_002039
Length: 295
Transcript: NM_002039
Exon
Length: 226
Transcript: NM_002039
Length: 226
Transcript: NM_002039
Exon
Length: 602
Transcript: NM_002039
Length: 602
Transcript: NM_002039
Exon
Length: 86
Transcript: NM_002039
Length: 86
Transcript: NM_002039
Exon
Length: 304
Transcript: NM_002039
Length: 304
Transcript: NM_002039
Exon
Length: 94
Transcript: NM_002039
Length: 94
Transcript: NM_002039
Exon
Length: 124
Transcript: NM_002039
Length: 124
Transcript: NM_002039
Exon
Length: 123
Transcript: NM_002039
Length: 123
Transcript: NM_002039
Exon
Length: 1096
Transcript: NM_002039
Length: 1096
Transcript: NM_002039
Intron
Length: 69
Transcript: NM_002039
Length: 69
Transcript: NM_002039
Intron
Length: 78216
Transcript: NM_002039
Length: 78216
Transcript: NM_002039
Intron
Length: 17719
Transcript: NM_002039
Length: 17719
Transcript: NM_002039
Intron
Length: 4282
Transcript: NM_002039
Length: 4282
Transcript: NM_002039
Intron
Length: 1201
Transcript: NM_002039
Length: 1201
Transcript: NM_002039
Intron
Length: 191
Transcript: NM_002039
Length: 191
Transcript: NM_002039
Intron
Length: 19002
Transcript: NM_002039
Length: 19002
Transcript: NM_002039
Intron
Length: 885
Transcript: NM_002039
Length: 885
Transcript: NM_002039
Intron
Length: 5615
Transcript: NM_002039
Length: 5615
Transcript: NM_002039
Intron
Length: 2805
Transcript: NM_002039
Length: 2805
Transcript: NM_002039
Reaction
Expected peak: 275
9.5M
refseq_GAB1.F2
refseq_GAB1.R2
Expected peak: 275
9.5M
refseq_GAB1.F2
refseq_GAB1.R2
Exon
Length: 16
Transcript: NM_207123
Length: 16
Transcript: NM_207123
Exon
Length: 279
Transcript: NM_207123
Length: 279
Transcript: NM_207123
Exon
Length: 295
Transcript: NM_207123
Length: 295
Transcript: NM_207123
Exon
Length: 226
Transcript: NM_207123
Length: 226
Transcript: NM_207123
Exon
Length: 602
Transcript: NM_207123
Length: 602
Transcript: NM_207123
Exon
Length: 86
Transcript: NM_207123
Length: 86
Transcript: NM_207123
Exon
Length: 304
Transcript: NM_207123
Length: 304
Transcript: NM_207123
Exon
Length: 90
Transcript: NM_207123
Length: 90
Transcript: NM_207123
Exon
Length: 94
Transcript: NM_207123
Length: 94
Transcript: NM_207123
Exon
Length: 124
Transcript: NM_207123
Length: 124
Transcript: NM_207123
Exon
Length: 123
Transcript: NM_207123
Length: 123
Transcript: NM_207123
Exon
Length: 1096
Transcript: NM_207123
Length: 1096
Transcript: NM_207123
Intron
Length: 69
Transcript: NM_207123
Length: 69
Transcript: NM_207123
Intron
Length: 78216
Transcript: NM_207123
Length: 78216
Transcript: NM_207123
Intron
Length: 17719
Transcript: NM_207123
Length: 17719
Transcript: NM_207123
Intron
Length: 4282
Transcript: NM_207123
Length: 4282
Transcript: NM_207123
Intron
Length: 1201
Transcript: NM_207123
Length: 1201
Transcript: NM_207123
Intron
Length: 191
Transcript: NM_207123
Length: 191
Transcript: NM_207123
Intron
Length: 17297
Transcript: NM_207123
Length: 17297
Transcript: NM_207123
Intron
Length: 1615
Transcript: NM_207123
Length: 1615
Transcript: NM_207123
Intron
Length: 885
Transcript: NM_207123
Length: 885
Transcript: NM_207123
Intron
Length: 5615
Transcript: NM_207123
Length: 5615
Transcript: NM_207123
Intron
Length: 2805
Transcript: NM_207123
Length: 2805
Transcript: NM_207123
Reaction
Expected peak: 365
6.3M
refseq_GAB1.F2
refseq_GAB1.R2
Expected peak: 365
6.3M
refseq_GAB1.F2
refseq_GAB1.R2
refseq_GAB1.F2
AATTACGTCCCAATGAATCCC
AATTACGTCCCAATGAATCCC
refseq_GAB1.R2
TTTATTTCTAAAGGCGCTGGC
TTTATTTCTAAAGGCGCTGGC