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Supplementary data
Tumor microenvironment associated modifications of alternative splicing
RBFOX2 and QKI dependent ASEs
QKI responsiveness of 48 RBFOX2 dependent ASEs
Transcript map
: ADD3 JPB_SKOV_Ctrl Lipo_72h
Exon
Length: 347
Transcript: NM_001121
Length: 347
Transcript: NM_001121
Exon
Length: 224
Transcript: NM_001121
Length: 224
Transcript: NM_001121
Exon
Length: 139
Transcript: NM_001121
Length: 139
Transcript: NM_001121
Exon
Length: 152
Transcript: NM_001121
Length: 152
Transcript: NM_001121
Exon
Length: 81
Transcript: NM_001121
Length: 81
Transcript: NM_001121
Exon
Length: 150
Transcript: NM_001121
Length: 150
Transcript: NM_001121
Exon
Length: 144
Transcript: NM_001121
Length: 144
Transcript: NM_001121
Exon
Length: 99
Transcript: NM_001121
Length: 99
Transcript: NM_001121
Exon
Length: 183
Transcript: NM_001121
Length: 183
Transcript: NM_001121
Exon
Length: 258
Transcript: NM_001121
Length: 258
Transcript: NM_001121
Exon
Length: 120
Transcript: NM_001121
Length: 120
Transcript: NM_001121
Exon
Length: 87
Transcript: NM_001121
Length: 87
Transcript: NM_001121
Exon
Length: 124
Transcript: NM_001121
Length: 124
Transcript: NM_001121
Exon
Length: 2240
Transcript: NM_001121
Length: 2240
Transcript: NM_001121
Intron
Length: 92325
Transcript: NM_001121
Length: 92325
Transcript: NM_001121
Intron
Length: 11928
Transcript: NM_001121
Length: 11928
Transcript: NM_001121
Intron
Length: 3343
Transcript: NM_001121
Length: 3343
Transcript: NM_001121
Intron
Length: 931
Transcript: NM_001121
Length: 931
Transcript: NM_001121
Intron
Length: 1164
Transcript: NM_001121
Length: 1164
Transcript: NM_001121
Intron
Length: 474
Transcript: NM_001121
Length: 474
Transcript: NM_001121
Intron
Length: 111
Transcript: NM_001121
Length: 111
Transcript: NM_001121
Intron
Length: 2545
Transcript: NM_001121
Length: 2545
Transcript: NM_001121
Intron
Length: 1724
Transcript: NM_001121
Length: 1724
Transcript: NM_001121
Intron
Length: 1551
Transcript: NM_001121
Length: 1551
Transcript: NM_001121
Intron
Length: 471
Transcript: NM_001121
Length: 471
Transcript: NM_001121
Intron
Length: 3859
Transcript: NM_001121
Length: 3859
Transcript: NM_001121
Intron
Length: 2839
Transcript: NM_001121
Length: 2839
Transcript: NM_001121
Reaction
Expected peak: 284
77.8M
refseq_ADD3.F2
refseq_ADD3.R2
Expected peak: 284
77.8M
refseq_ADD3.F2
refseq_ADD3.R2
Exon
Length: 347
Transcript: NM_016824
Length: 347
Transcript: NM_016824
Exon
Length: 224
Transcript: NM_016824
Length: 224
Transcript: NM_016824
Exon
Length: 139
Transcript: NM_016824
Length: 139
Transcript: NM_016824
Exon
Length: 152
Transcript: NM_016824
Length: 152
Transcript: NM_016824
Exon
Length: 81
Transcript: NM_016824
Length: 81
Transcript: NM_016824
Exon
Length: 150
Transcript: NM_016824
Length: 150
Transcript: NM_016824
Exon
Length: 144
Transcript: NM_016824
Length: 144
Transcript: NM_016824
Exon
Length: 99
Transcript: NM_016824
Length: 99
Transcript: NM_016824
Exon
Length: 183
Transcript: NM_016824
Length: 183
Transcript: NM_016824
Exon
Length: 258
Transcript: NM_016824
Length: 258
Transcript: NM_016824
Exon
Length: 120
Transcript: NM_016824
Length: 120
Transcript: NM_016824
Exon
Length: 87
Transcript: NM_016824
Length: 87
Transcript: NM_016824
Exon
Length: 124
Transcript: NM_016824
Length: 124
Transcript: NM_016824
Exon
Length: 96
Transcript: NM_016824
Length: 96
Transcript: NM_016824
Exon
Length: 2240
Transcript: NM_016824
Length: 2240
Transcript: NM_016824
Intron
Length: 92325
Transcript: NM_016824
Length: 92325
Transcript: NM_016824
Intron
Length: 11928
Transcript: NM_016824
Length: 11928
Transcript: NM_016824
Intron
Length: 3343
Transcript: NM_016824
Length: 3343
Transcript: NM_016824
Intron
Length: 931
Transcript: NM_016824
Length: 931
Transcript: NM_016824
Intron
Length: 1164
Transcript: NM_016824
Length: 1164
Transcript: NM_016824
Intron
Length: 474
Transcript: NM_016824
Length: 474
Transcript: NM_016824
Intron
Length: 111
Transcript: NM_016824
Length: 111
Transcript: NM_016824
Intron
Length: 2545
Transcript: NM_016824
Length: 2545
Transcript: NM_016824
Intron
Length: 1724
Transcript: NM_016824
Length: 1724
Transcript: NM_016824
Intron
Length: 1551
Transcript: NM_016824
Length: 1551
Transcript: NM_016824
Intron
Length: 471
Transcript: NM_016824
Length: 471
Transcript: NM_016824
Intron
Length: 3859
Transcript: NM_016824
Length: 3859
Transcript: NM_016824
Intron
Length: 1818
Transcript: NM_016824
Length: 1818
Transcript: NM_016824
Intron
Length: 925
Transcript: NM_016824
Length: 925
Transcript: NM_016824
Reaction
Expected peak: 380
4.1M
refseq_ADD3.F2
refseq_ADD3.R2
Expected peak: 380
4.1M
refseq_ADD3.F2
refseq_ADD3.R2
Exon
Length: 184
Transcript: NM_019903
Length: 184
Transcript: NM_019903
Exon
Length: 224
Transcript: NM_019903
Length: 224
Transcript: NM_019903
Exon
Length: 139
Transcript: NM_019903
Length: 139
Transcript: NM_019903
Exon
Length: 152
Transcript: NM_019903
Length: 152
Transcript: NM_019903
Exon
Length: 81
Transcript: NM_019903
Length: 81
Transcript: NM_019903
Exon
Length: 150
Transcript: NM_019903
Length: 150
Transcript: NM_019903
Exon
Length: 144
Transcript: NM_019903
Length: 144
Transcript: NM_019903
Exon
Length: 99
Transcript: NM_019903
Length: 99
Transcript: NM_019903
Exon
Length: 183
Transcript: NM_019903
Length: 183
Transcript: NM_019903
Exon
Length: 258
Transcript: NM_019903
Length: 258
Transcript: NM_019903
Exon
Length: 120
Transcript: NM_019903
Length: 120
Transcript: NM_019903
Exon
Length: 87
Transcript: NM_019903
Length: 87
Transcript: NM_019903
Exon
Length: 124
Transcript: NM_019903
Length: 124
Transcript: NM_019903
Exon
Length: 2240
Transcript: NM_019903
Length: 2240
Transcript: NM_019903
Intron
Length: 94473
Transcript: NM_019903
Length: 94473
Transcript: NM_019903
Intron
Length: 11928
Transcript: NM_019903
Length: 11928
Transcript: NM_019903
Intron
Length: 3343
Transcript: NM_019903
Length: 3343
Transcript: NM_019903
Intron
Length: 931
Transcript: NM_019903
Length: 931
Transcript: NM_019903
Intron
Length: 1164
Transcript: NM_019903
Length: 1164
Transcript: NM_019903
Intron
Length: 474
Transcript: NM_019903
Length: 474
Transcript: NM_019903
Intron
Length: 111
Transcript: NM_019903
Length: 111
Transcript: NM_019903
Intron
Length: 2545
Transcript: NM_019903
Length: 2545
Transcript: NM_019903
Intron
Length: 1724
Transcript: NM_019903
Length: 1724
Transcript: NM_019903
Intron
Length: 1551
Transcript: NM_019903
Length: 1551
Transcript: NM_019903
Intron
Length: 471
Transcript: NM_019903
Length: 471
Transcript: NM_019903
Intron
Length: 3859
Transcript: NM_019903
Length: 3859
Transcript: NM_019903
Intron
Length: 2839
Transcript: NM_019903
Length: 2839
Transcript: NM_019903
Reaction
Expected peak: 284
77.8M
refseq_ADD3.F2
refseq_ADD3.R2
Expected peak: 284
77.8M
refseq_ADD3.F2
refseq_ADD3.R2
refseq_ADD3.F2
CAGGACCACAATCTCAGTTGC
CAGGACCACAATCTCAGTTGC
refseq_ADD3.R2
TCGCTTAGCAAGCTCATCTTC
TCGCTTAGCAAGCTCATCTTC